Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012963.2 Cucumis melo HOM05D003500 ORTHO05D003919 1.8e-154 549.3 294 100.0
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 7.0e-122 441.0 274 86.1
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 4.7e-110 401.7 286 79.7
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 6.4e-83 311.6 274 64.2
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 7.3e-79 298.1 276 66.3
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 5.5e-34 149.1 277 41.2
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 1.0e-32 144.8 274 41.6
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 9.7e-31 138.3 270 38.9
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 5.9e-28 129.0 278 39.9
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 7.2e-26 122.1 275 37.8
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 1.6e-25 120.9 275 39.6
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 2.7e-25 120.2 177 45.2
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 7.9e-25 118.6 285 36.5
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 5.1e-24 115.9 141 51.8
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 3.3e-23 113.2 118 57.6
CSS0016282 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 4.8e-22 109.4 124 49.2
CSS0048346 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 4.8e-22 109.4 124 49.2
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 4.8e-22 109.4 274 35.0
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 6.3e-22 109.0 282 34.4
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 1.1e-21 108.2 290 32.1
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 1.1e-21 108.2 272 32.7
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 2.4e-21 107.1 293 32.8
Sabra03G0031200 Salix brachista HOM05D003500 ORTHO05D003919 4.1e-21 106.3 111 56.8
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 5.3e-21 105.9 281 33.8
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 6.9e-21 105.5 266 35.7
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 5.9e-20 102.4 274 34.3
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 5.9e-20 102.4 279 33.3
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 1.3e-19 101.3 280 34.3
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 2.2e-19 100.5 271 34.7
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 2.9e-19 100.1 149 40.9
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 5.0e-19 99.4 270 31.5
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 7.2e-18 95.5 278 35.3
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 3.6e-17 93.2 298 33.6
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 6.1e-17 92.4 271 33.2
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 7.9e-17 92.0 148 39.2
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 1.8e-16 90.9 279 30.1
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 2.3e-16 90.5 159 35.2
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 2.3e-16 90.5 123 43.9
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 3.9e-16 89.7 291 33.7
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 3.9e-16 89.7 282 30.9
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 8.8e-16 88.6 278 31.3
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.1e-15 88.2 290 32.8
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 1.1e-15 88.2 272 29.4
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 1.1e-15 88.2 277 31.4
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 2.0e-15 87.4 295 28.5
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 2.0e-15 87.4 279 31.9
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 3.3e-15 86.7 287 29.3
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 3.3e-15 86.7 274 33.2
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 4.4e-15 86.3 271 31.7
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 5.7e-15 85.9 280 30.4
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 9.7e-15 85.1 295 28.1
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.3e-14 84.7 162 35.8
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.7e-14 84.3 273 33.0
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 2.8e-14 83.6 275 30.2
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 2.8e-14 83.6 156 36.5
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 3.7e-14 83.2 276 30.4
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 3.7e-14 83.2 156 35.9
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 4.8e-14 82.8 276 30.8
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 6.3e-14 82.4 276 30.4
Solyc03g120180.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 8.2e-14 82.0 119 42.9
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 8.2e-14 82.0 276 32.2
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 3.1e-13 80.1 268 28.7
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 4.1e-13 79.7 278 32.4
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 5.3e-13 79.3 273 30.0
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 5.3e-13 79.3 270 31.9
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 9.1e-13 78.6 286 29.4
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 9.1e-13 78.6 275 29.1
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 1.2e-12 78.2 272 29.4
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 1.2e-12 78.2 256 31.6
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 2.0e-12 77.4 277 30.0
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 2.6e-12 77.0 293 30.4
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 3.5e-12 76.6 275 29.8
SGA_v2.0_scaffold37G14827 Striga asiatica HOM05D003500 ORTHO05D003919 3.5e-12 76.6 114 46.5
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 1.7e-11 74.3 269 28.3
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 3.8e-11 73.2 282 29.1
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 5.0e-11 72.8 275 29.5
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 1.5e-10 71.2 267 28.8
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 1.9e-10 70.9 275 29.1
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 1.9e-10 70.9 285 27.7
Phvul.010G150500 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 2.5e-10 70.5 316 29.7
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 4.2e-10 69.7 270 29.3
AL1G60570 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 9.4e-10 68.6 269 29.0
Lalb_Chr01g0012691 Lupinus albus HOM05D003500 ORTHO05D003919 1.2e-09 68.2 135 37.0
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 1.6e-09 67.8 280 28.2
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 2.7e-09 67.0 264 27.7
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 2.7e-09 67.0 245 31.4
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 2.7e-09 67.0 299 29.1
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 2.7e-09 67.0 273 28.9
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 6.1e-09 65.9 288 29.5
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 1.0e-08 65.1 290 28.6
SHI10927 Sapria himalayana HOM05D003500 ORTHO05D003919 1.0e-08 65.1 137 39.4
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 1.8e-08 64.3 238 29.4
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 2.3e-08 63.9 281 26.0
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 2.3e-08 63.9 271 27.3
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 2.3e-08 63.9 291 26.5
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 2.3e-08 63.9 273 28.6
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 3.0e-08 63.5 276 28.6
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 4.0e-08 63.2 266 30.8
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 6.7e-08 62.4 245 26.9
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 8.8e-08 62.0 304 27.3
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 1.2e-07 61.6 289 28.0
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 2.0e-07 60.8 304 24.3
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 2.6e-07 60.5 248 25.8
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 2.6e-07 60.5 278 29.1
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 2.6e-07 60.5 238 27.7
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 2.6e-07 60.5 288 26.0
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 2.6e-07 60.5 252 27.4
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 3.3e-07 60.1 252 27.4
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 4.4e-07 59.7 271 28.4
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 4.4e-07 59.7 283 25.1
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 5.7e-07 59.3 269 26.4
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 9.7e-07 58.5 285 25.6
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 9.7e-07 58.5 282 29.8
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 1.3e-06 58.2 256 30.1
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 2.2e-06 57.4 254 27.6
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 2.2e-06 57.4 250 30.0
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 2.2e-06 57.4 276 30.4
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 2.8e-06 57.0 270 24.4
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 2.8e-06 57.0 285 24.9
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 4.8e-06 56.2 284 26.8
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 4.8e-06 56.2 252 27.8
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 6.3e-06 55.8 277 27.4
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 6.3e-06 55.8 270 25.9
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 8.2e-06 55.5 262 30.2


User provided reference genes

Program Settings