Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012958.2 Cucumis melo HOM05D006908 ORTHO05D008662 1.2e-205 719.5 359 100.0
CsaV3_3G025130 Cucumis sativus L. HOM05D006908 ORTHO05D008662 7.1e-185 650.6 335 95.8
ClCG07G013040 Citrullus lanatus HOM05D006908 ORTHO05D008662 1.7e-175 619.4 341 90.3
Sed0021689 Sechium edule HOM05D006908 ORTHO05D008662 6.0e-152 541.2 340 80.6
QL05p023344 Quercus lobata HOM05D006908 ORTHO05D008662 2.3e-111 406.4 334 62.6
COL.COLO4_30388 Corchorus olitorius HOM05D006908 ORTHO05D008662 2.0e-110 403.3 333 61.0
MD17G1194300 Malus domestica HOM05D006908 ORTHO05D008662 5.7e-110 401.7 333 62.8
CiPaw.01G238600 Carya illinoinensis HOM05D006908 ORTHO05D008662 3.7e-109 399.1 333 63.1
Thecc.06G089400 Theobroma cacao HOM05D006908 ORTHO05D008662 1.8e-108 396.7 334 60.5
Haze_16403 Corylus avellana HOM05D006908 ORTHO05D008662 4.1e-108 395.6 325 61.5
Lalb_Chr22g0351301 Lupinus albus HOM05D006908 ORTHO05D008662 1.2e-107 394.0 333 59.2
Gorai.006G098400 Gossypium raimondii HOM05D006908 ORTHO05D008662 2.7e-107 392.9 334 60.8
Duzib160G0703 Durio zibethinus HOM05D006908 ORTHO05D008662 1.3e-106 390.6 332 63.0
Dinv38042 Davidia involucrata HOM05D006908 ORTHO05D008662 2.5e-105 386.3 332 60.8
Hma1.2p1_0323F.1_g125120 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 7.2e-105 384.8 335 59.1
Rhsim08G0222000 Rhododendron simsii HOM05D006908 ORTHO05D008662 9.5e-105 384.4 339 58.7
Atru.chr1.3281 Acer truncatum HOM05D006908 ORTHO05D008662 2.8e-104 382.9 335 59.1
VMungo1080G1808 Vigna mungo HOM05D006908 ORTHO05D008662 2.8e-104 382.9 328 61.0
FAN05G1986 Fragaria x ananassa HOM05D006908 ORTHO05D008662 3.6e-104 382.5 330 61.2
Ca_01120_v3 Cicer arietinum L. HOM05D006908 ORTHO05D008662 3.0e-103 379.4 326 58.3
FAN09G3067 Fragaria x ananassa HOM05D006908 ORTHO05D008662 3.0e-103 379.4 345 58.8
RcHm_v2.0_Chr2g0138011 Rosa chinensis HOM05D006908 ORTHO05D008662 4.0e-103 379.0 337 59.3
GSVIVG01017098001 Vitis vinifera HOM05D006908 ORTHO05D008662 5.2e-103 378.6 330 60.0
Sabra01G0145800 Salix brachista HOM05D006908 ORTHO05D008662 1.2e-102 377.5 331 59.8
TAR626G0624 Trochodendron aralioides HOM05D006908 ORTHO05D008662 2.0e-102 376.7 350 58.3
Lj3g0017668 Lotus japonicus HOM05D006908 ORTHO05D008662 9.8e-102 374.4 335 58.5
FvH4_6g31280 Fragaria vesca HOM05D006908 ORTHO05D008662 1.7e-101 373.6 326 60.1
Lj5C59T9 Lonicera japonica HOM05D006908 ORTHO05D008662 2.2e-101 373.2 324 59.6
HanXRQChr02g0032801 Helianthus annuus HOM05D006908 ORTHO05D008662 3.7e-101 372.5 325 57.2
Nn8g39204 Nelumbo nucifera HOM05D006908 ORTHO05D008662 6.3e-101 371.7 337 59.9
Medtr2g102040 Medicago truncatula HOM05D006908 ORTHO05D008662 1.1e-100 370.9 331 57.1
PGR102G2040 Punica granatum HOM05D006908 ORTHO05D008662 1.1e-100 370.9 346 56.4
Sopen03g039000 Solanum pennellii HOM05D006908 ORTHO05D008662 1.4e-100 370.5 336 57.7
PGSC0003DMG400005687 Solanum tuberosum HOM05D006908 ORTHO05D008662 1.4e-100 370.5 341 56.9
DCAR_023055 Daucus carota HOM05D006908 ORTHO05D008662 3.1e-100 369.4 332 59.0
PSO782G4818 Papaver somniferum HOM05D006908 ORTHO05D008662 5.4e-100 368.6 332 58.4
Eucgr.J02986 Eucalyptus grandis HOM05D006908 ORTHO05D008662 7.0e-100 368.2 324 59.3
TPR.G37174 Trifolium pratense HOM05D006908 ORTHO05D008662 9.2e-100 367.9 326 58.3
Phvul.005G170700 Phaseolus vulgaris HOM05D006908 ORTHO05D008662 2.7e-99 366.3 351 56.1
Nitab4.5_0002308g0060 Nicotiana tabacum HOM05D006908 ORTHO05D008662 4.5e-99 365.5 326 60.1
vmacro18903 Vaccinium macrocarpon HOM05D006908 ORTHO05D008662 1.0e-98 364.4 381 51.7
MSTRG.11073 Avicennia marina HOM05D006908 ORTHO05D008662 1.7e-98 363.6 331 56.2
Migut.I00872 Erythranthe guttata HOM05D006908 ORTHO05D008662 2.3e-98 363.2 330 56.7
Actinidia01807 Actinidia chinensis HOM05D006908 ORTHO05D008662 2.9e-98 362.8 329 57.1
arahy.Tifrunner.gnm1.ann1.0IDI1A Arachis hypogaea HOM05D006908 ORTHO05D008662 2.9e-98 362.8 333 57.4
arahy.Tifrunner.gnm1.ann1.UK934I Arachis hypogaea HOM05D006908 ORTHO05D008662 2.9e-98 362.8 333 57.4
CAN.G438.72 Capsicum annuum HOM05D006908 ORTHO05D008662 2.9e-98 362.8 327 58.7
Ciclev10025928m.g Citrus clementina HOM05D006908 ORTHO05D008662 5.0e-98 362.1 369 54.2
Glyma.15G014900 Glycine max HOM05D006908 ORTHO05D008662 5.0e-98 362.1 335 55.8
PSO063G2605 Papaver somniferum HOM05D006908 ORTHO05D008662 8.6e-98 361.3 331 58.9
Prupe.3G070300 Prunus persica HOM05D006908 ORTHO05D008662 1.9e-97 360.1 333 58.3
ECA247G1365 Erigeron canadensis HOM05D006908 ORTHO05D008662 4.3e-97 359.0 336 56.8
Gohir.D09G082700 Gossypium hirsutum HOM05D006908 ORTHO05D008662 1.6e-96 357.1 334 57.2
EL10Ac9g22006 Beta vulgaris HOM05D006908 ORTHO05D008662 2.1e-96 356.7 328 57.0
CANSAT56G3342 Cannabis sativa HOM05D006908 ORTHO05D008662 3.6e-96 355.9 326 56.1
SalBow2G2262 Salvia bowleyana HOM05D006908 ORTHO05D008662 6.1e-96 355.1 334 55.7
Sc10g0007370 Simmondsia chinensis HOM05D006908 ORTHO05D008662 8.0e-96 354.8 341 53.7
Ah.01g005440 Amaranthus hybridus HOM05D006908 ORTHO05D008662 1.4e-95 354.0 338 55.0
Oeu063957.2 Olea europaea HOM05D006908 ORTHO05D008662 6.8e-95 351.7 320 57.8
Manes.11G045900 Manihot esculenta HOM05D006908 ORTHO05D008662 8.9e-95 351.3 335 55.5
AUR62042927 Chenopodium quinoa HOM05D006908 ORTHO05D008662 2.0e-94 350.1 347 55.0
Cc04_g03340 Coffea canephora HOM05D006908 ORTHO05D008662 1.2e-91 340.9 334 55.4
HPP92_003725 Vanilla planifolia HOM05D006908 ORTHO05D008662 1.2e-91 340.9 332 53.0
Sp5g35850 Schrenkiella parvula HOM05D006908 ORTHO05D008662 1.6e-91 340.5 326 55.2
Hund06614 Selenicereus undatus HOM05D006908 ORTHO05D008662 3.5e-91 339.3 328 56.4
Solyc03g120130.4 Solanum lycopersicum HOM05D006908 ORTHO05D008662 4.6e-91 339.0 337 54.3
Gohir.A09G082800 Gossypium hirsutum HOM05D006908 ORTHO05D008662 1.7e-90 337.0 339 54.9
Psat5g298720 Pisum sativum HOM05D006908 ORTHO05D008662 3.0e-90 336.3 295 56.6
Aa31LG4G230 Aethionema arabicum HOM05D006908 ORTHO05D008662 3.3e-89 332.8 359 49.9
CDE02G0011 Ceratophyllum demersum HOM05D006908 ORTHO05D008662 3.3e-89 332.8 333 54.1
Potri.001G181200 Populus trichocarpa HOM05D006908 ORTHO05D008662 3.3e-89 332.8 285 60.0
Thhalv10018901m.g Eutrema salsugineum HOM05D006908 ORTHO05D008662 2.3e-87 326.6 333 52.9
CSS0010187 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 4.0e-87 325.9 288 59.7
CARHR074570 Cardamine hirsuta HOM05D006908 ORTHO05D008662 1.5e-86 323.9 330 52.4
THA.LOC104812520 Tarenaya hassleriana HOM05D006908 ORTHO05D008662 1.3e-85 320.9 342 49.7
Carub.0002s2758 Capsella rubella HOM05D006908 ORTHO05D008662 2.9e-85 319.7 328 51.5
Zm00001eb275430 Zea mays HOM05D006908 ORTHO05D008662 1.9e-84 317.0 342 50.9
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 4.1e-84 315.8 328 51.5
Aqoxy7G01689 Aquilegia oxysepala HOM05D006908 ORTHO05D008662 5.4e-84 315.5 352 52.8
Os06g0639300 Oryza sativa ssp. japonica HOM05D006908 ORTHO05D008662 1.2e-83 314.3 334 51.5
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 2.7e-83 313.2 325 51.1
Nitab4.5_0000671g0150 Nicotiana tabacum HOM05D006908 ORTHO05D008662 2.7e-83 313.2 326 53.4
Peaxi162Scf00015g00453 Petunia axillaris HOM05D006908 ORTHO05D008662 1.7e-82 310.5 325 52.0
AT1G79915 Arabidopsis thaliana HOM05D006908 ORTHO05D008662 1.5e-81 307.4 329 51.7
TWI75G1463 Tripterygium wilfordii HOM05D006908 ORTHO05D008662 1.5e-81 307.4 331 51.7
unitig_52.g17450 Utricularia gibba HOM05D006908 ORTHO05D008662 9.5e-81 304.7 333 49.8
AUR62016450 Chenopodium quinoa HOM05D006908 ORTHO05D008662 1.6e-80 303.9 297 55.2
SEGI_13943 Sequoiadendron giganteum HOM05D006908 ORTHO05D008662 6.2e-80 302.0 353 47.0
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 5.2e-79 298.9 351 47.3
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 5.2e-79 298.9 351 47.3
Cfa002075 Carpinus fangiana HOM05D006908 ORTHO05D008662 4.4e-78 295.8 245 61.2
Hma1.2p1_0323F.1_g125130 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 1.1e-76 291.2 335 49.9
BraA07t32051Z Brassica rapa HOM05D006908 ORTHO05D008662 2.4e-76 290.0 341 47.8
Mapoly0072s0004 Marchantia polymorpha HOM05D006908 ORTHO05D008662 6.6e-74 282.0 342 44.2
Cpa.g.sc0.185 Carica papaya HOM05D006908 ORTHO05D008662 1.1e-73 281.2 219 63.5
SHI10939 Sapria himalayana HOM05D006908 ORTHO05D008662 8.9e-71 271.6 254 55.9
ATR0602G186 Amborella trichopoda HOM05D006908 ORTHO05D008662 3.4e-70 269.6 249 53.0
MBI15_g13424_MAGBIO Magnolia biondii HOM05D006908 ORTHO05D008662 2.3e-66 256.9 277 53.1
A07p45490 Brassica napus HOM05D006908 ORTHO05D008662 4.3e-65 252.7 391 40.7
Pp3c16_8290 Physcomitrium patens HOM05D006908 ORTHO05D008662 2.0e-62 243.8 359 39.3
AagrBONN_evm.TU.Sc2ySwM_344.5185 Anthoceros agrestis HOM05D006908 ORTHO05D008662 2.6e-62 243.4 330 44.2
AUR62033073 Chenopodium quinoa HOM05D006908 ORTHO05D008662 4.9e-61 239.2 290 48.3
Lsat_1_v5_gn_1_35121 Lactuca sativa HOM05D006908 ORTHO05D008662 5.4e-60 235.7 220 56.4
CSS0029579 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 1.2e-54 218.0 187 59.4
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 2.9e-53 213.4 313 39.0
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 7.1e-44 182.2 338 37.3
FAN02G3381 Fragaria x ananassa HOM05D006908 ORTHO05D008662 1.1e-39 168.3 232 46.1
SGA_v2.0_scaffold37G14828 Striga asiatica HOM05D006908 ORTHO05D008662 2.3e-34 150.6 151 55.6
C09p24020 Brassica napus HOM05D006908 ORTHO05D008662 2.8e-32 143.7 185 43.2
SMO347G0515 Selaginella moellendorffii HOM05D006908 ORTHO05D008662 4.8e-32 142.9 204 42.2
AL2G41640 Arabidopsis lyrata HOM05D006908 ORTHO05D008662 3.3e-25 120.2 161 41.6
Actinidia32749 Actinidia chinensis HOM05D006908 ORTHO05D008662 2.1e-19 100.9 75 66.7
BolC9t55322H Brassica oleracea HOM05D006908 ORTHO05D008662 2.1e-19 100.9 93 53.8
Cpa.g.sc41.12 Carica papaya HOM05D006908 ORTHO05D008662 2.7e-19 100.5 88 58.0
FAN14G1268 Fragaria x ananassa HOM05D006908 ORTHO05D008662 8.2e-08 62.4 75 46.7
MCO09G596 Micromonas commoda HOM05D002956 ORTHO05D008031 4.1e-07 60.1 177 28.2
Cre17.g747647 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 7.0e-07 59.3 198 28.3
SMO351G0211 Selaginella moellendorffii HOM05D001602 ORTHO05D001470 1.2e-06 58.5 173 28.3
Sc22g0002270 Simmondsia chinensis HOM05D006745 ORTHO05D008449 2.0e-06 57.8 134 34.3
Cpa.g.sc41.11 Carica papaya HOM05D006908 ORTHO05D008662 3.5e-06 57.0 39 56.4
MCO15G679 Micromonas commoda HOM05D014140 ORTHO05D015854 5.9e-06 56.2 162 29.0
Os07g0641600 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D008031 7.7e-06 55.8 157 23.6


User provided reference genes

Program Settings