Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 0.0e+00 1758.8 873 100.0
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 0.0e+00 1701.8 883 96.4
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 0.0e+00 1612.4 876 91.7
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1510.4 875 87.4
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1501.1 876 85.8
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1231.5 871 71.9
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1206.0 911 66.8
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1196.8 882 69.7
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 0.0e+00 1194.1 920 67.1
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1191.4 851 70.6
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1190.6 881 68.9
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1189.5 884 69.1
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1186.0 884 69.0
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1184.9 864 70.1
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1182.9 874 69.9
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1182.5 894 68.1
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1181.8 884 68.8
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1181.0 884 68.9
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1174.5 877 68.0
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1172.5 845 70.4
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1172.1 869 68.8
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1169.8 886 67.8
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1165.2 896 67.7
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1164.4 878 68.1
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1161.7 908 66.0
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1161.4 881 67.3
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1152.5 892 66.7
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 0.0e+00 1150.6 882 67.1
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 0.0e+00 1149.8 874 67.0
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1149.4 871 67.7
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 0.0e+00 1145.2 903 65.7
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1143.3 886 66.4
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1142.9 875 64.9
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1142.9 883 67.5
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1141.7 901 65.6
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1140.9 885 65.9
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1138.6 871 67.5
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1138.3 880 66.4
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 0.0e+00 1137.5 880 66.2
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1137.5 881 66.3
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1137.5 899 65.9
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1136.7 871 65.7
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1135.6 900 65.3
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1134.0 870 66.1
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 0.0e+00 1134.0 878 67.1
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1133.6 898 64.6
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 0.0e+00 1132.5 888 65.4
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 0.0e+00 1132.1 900 65.1
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1132.1 877 64.8
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1132.1 872 65.5
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1130.5 916 64.1
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1128.6 900 64.9
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 0.0e+00 1126.3 873 65.4
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1126.3 923 63.7
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1126.3 891 65.7
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 0.0e+00 1126.3 903 65.3
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1124.0 903 64.7
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1124.0 885 65.3
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 0.0e+00 1123.6 872 65.6
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1122.5 882 66.2
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1120.9 882 65.3
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1119.8 860 66.6
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1119.4 924 63.3
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1118.2 884 65.0
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 0.0e+00 1113.2 906 63.6
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1112.4 875 65.7
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 0.0e+00 1112.4 879 64.8
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1112.1 886 65.5
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 0.0e+00 1109.7 883 63.6
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1104.0 873 65.9
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1102.8 892 64.9
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 0.0e+00 1100.1 871 63.9
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 0.0e+00 1091.3 947 60.2
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 0.0e+00 1087.4 908 61.2
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 0.0e+00 1084.3 910 61.2
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1083.6 873 64.6
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1083.6 871 64.8
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1078.9 873 64.5
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 0.0e+00 1076.2 875 63.0
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 6.0e-312 1074.3 889 64.2
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 6.0e-312 1073.5 872 65.7
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 1.2e-311 1073.2 748 72.7
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 1.8e-311 1072.4 877 62.1
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 9.0e-311 1070.1 879 63.3
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 2.0e-310 1068.9 883 62.9
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 4.5e-310 1067.8 896 62.8
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 7.7e-310 1067.0 883 63.4
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 9.4e-308 1060.1 900 61.7
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 1.4e-306 1056.2 916 60.5
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 1.8e-306 1055.8 874 62.0
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 1.5e-305 1052.7 874 63.7
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 3.3e-305 1051.6 898 60.2
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 2.2e-304 1048.9 879 62.5
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 1.4e-303 1046.2 887 63.1
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 1.8e-303 1045.8 885 62.5
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 2.4e-303 1045.4 867 61.9
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 4.1e-303 1044.6 896 62.5
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 3.5e-302 1041.6 899 61.6
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 1.7e-301 1039.3 870 61.4
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 2.2e-301 1038.9 903 62.5
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 1.1e-300 1036.6 898 61.7
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 1.6e-299 1032.7 852 62.3
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 4.0e-298 1028.1 887 62.0
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 7.5e-297 1023.8 901 61.3
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 7.5e-297 1023.8 886 61.3
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 7.5e-297 1023.8 871 62.1
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 3.7e-296 1021.5 890 61.7
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 6.3e-296 1020.8 886 61.2
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 7.7e-294 1013.8 891 61.1
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 1.9e-292 1009.2 846 63.4
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 2.1e-291 1005.7 890 58.0
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 4.4e-289 998.0 895 60.4
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 1.6e-286 989.6 871 60.6
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 2.7e-286 988.8 956 54.5
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 1.3e-285 986.5 876 60.0
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 2.9e-285 985.3 882 59.8
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 1.9e-284 982.6 819 63.0
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 2.5e-284 982.2 887 58.1
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 3.6e-283 978.4 794 64.4
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 2.2e-280 969.1 925 57.4
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 4.6e-278 961.4 623 76.4
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 1.1e-276 956.8 875 57.6
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 1.4e-274 949.9 879 56.2
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 2.1e-270 936.0 588 77.0
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 3.9e-269 931.8 954 52.8
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 3.4e-265 918.7 895 55.8
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 4.9e-264 914.8 890 54.8
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 6.0e-262 907.9 863 58.1
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 8.9e-258 894.0 910 53.5
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 5.8e-257 891.3 840 56.3
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 2.4e-255 885.9 908 53.2
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 1.2e-249 867.1 762 57.5
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 2.2e-248 862.8 922 52.8
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 6.9e-242 841.3 895 51.4
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 1.6e-235 820.1 811 53.8
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 2.8e-235 819.3 812 53.2
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 1.8e-234 816.6 859 51.7
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 7.1e-231 804.7 858 51.6
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 3.3e-228 795.8 806 52.5
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 3.8e-224 782.3 626 61.7
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 3.0e-221 772.7 813 52.2
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 1.3e-208 730.7 572 61.5
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 2.7e-206 723.0 827 45.2
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 8.8e-205 718.0 583 65.7
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 2.8e-203 713.0 868 45.3
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 4.7e-198 695.7 862 44.4
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 1.0e-184 651.4 624 57.2
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 6.1e-182 642.1 647 50.4
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 1.0e-181 641.3 651 55.3
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 5.7e-172 609.0 578 55.7
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 4.9e-163 579.3 875 40.0
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 2.0e-140 504.2 536 47.2
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 2.7e-121 440.7 573 40.3
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 2.3e-120 437.6 446 54.0
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 1.5e-119 434.9 512 49.8
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.5e-108 398.3 499 45.5
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 4.3e-103 380.2 401 54.9
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 7.9e-97 359.4 475 44.2
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 3.7e-94 350.5 264 64.0
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 3.7e-94 350.5 698 31.9
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 2.5e-82 311.2 225 65.3
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 2.0e-79 301.6 264 58.0
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 1.0e-67 262.7 175 69.7
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 1.3e-67 262.3 520 31.2
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 3.1e-61 241.1 496 30.4
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 3.6e-57 227.6 157 70.7
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 1.1e-34 152.9 197 46.7
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 7.1e-21 107.1 216 33.3
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 1.6e-20 105.9 80 61.2
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 3.0e-19 101.7 74 67.6
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 5.1e-19 100.9 65 75.4
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 9.0e-16 90.1 123 46.3
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 4.6e-12 77.8 74 58.1
VMungo0720G0978 Vigna mungo HOM05D003973 ORTHO05D435101 2.8e-09 68.6 261 24.9


User provided reference genes

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