Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012759.2 Cucumis melo HOM05D006020 ORTHO05D007665 2.4e-298 1028.1 519 100.0
CsaV3_7G025840 Cucumis sativus L. HOM05D006020 ORTHO05D007665 1.9e-279 965.3 519 95.2
Sed0023867 Sechium edule HOM05D006020 ORTHO05D007665 7.2e-247 857.1 519 84.6
ClCG09G009100 Citrullus lanatus HOM05D006020 ORTHO05D007665 4.4e-244 847.8 519 85.7
Dinv19209 Davidia involucrata HOM05D006020 ORTHO05D007665 2.7e-137 493.0 524 53.2
CiPaw.04G106000 Carya illinoinensis HOM05D006020 ORTHO05D007665 3.6e-137 492.7 523 52.0
GSVIVG01028621001 Vitis vinifera HOM05D006020 ORTHO05D007665 1.5e-135 487.3 522 54.6
Prupe.8G204200 Prunus persica HOM05D006020 ORTHO05D007665 2.6e-135 486.5 523 54.9
Dinv04657 Davidia involucrata HOM05D006020 ORTHO05D007665 3.3e-135 486.1 522 53.1
Thecc.01G227300 Theobroma cacao HOM05D006020 ORTHO05D007665 2.2e-134 483.4 522 52.9
QL04p091507 Quercus lobata HOM05D006020 ORTHO05D007665 5.3e-133 478.8 562 48.9
Gorai.007G153400 Gossypium raimondii HOM05D006020 ORTHO05D007665 2.6e-132 476.5 527 51.6
Sabra02G0183800 Salix brachista HOM05D006020 ORTHO05D007665 7.7e-132 474.9 531 51.4
Duzib133G0822 Durio zibethinus HOM05D006020 ORTHO05D007665 1.3e-131 474.2 522 52.3
Gohir.A11G136800 Gossypium hirsutum HOM05D006020 ORTHO05D007665 1.7e-131 473.8 527 51.0
MD05G1177200 Malus domestica HOM05D006020 ORTHO05D007665 1.7e-131 473.8 522 53.1
Potri.002G241200 Populus trichocarpa HOM05D006020 ORTHO05D007665 3.8e-131 472.6 525 51.6
Gohir.D11G143100 Gossypium hirsutum HOM05D006020 ORTHO05D007665 1.5e-130 470.7 536 50.4
RcHm_v2.0_Chr6g0285011 Rosa chinensis HOM05D006020 ORTHO05D007665 2.1e-129 466.8 525 53.0
Lalb_Chr19g0125561 Lupinus albus HOM05D006020 ORTHO05D007665 6.1e-129 465.3 523 49.3
Manes.12G041000 Manihot esculenta HOM05D006020 ORTHO05D007665 4.4e-127 459.1 523 49.7
TAR365G0939 Trochodendron aralioides HOM05D006020 ORTHO05D007665 7.5e-127 458.4 523 48.9
TWI75G0236 Tripterygium wilfordii HOM05D006020 ORTHO05D007665 3.7e-126 456.1 525 50.9
COL.COLO4_09005 Corchorus olitorius HOM05D006020 ORTHO05D007665 2.4e-125 453.4 576 47.6
CANSAT01G2399 Cannabis sativa HOM05D006020 ORTHO05D007665 5.9e-124 448.7 420 56.7
Lj1g0020866 Lotus japonicus HOM05D006020 ORTHO05D007665 2.2e-123 446.8 523 48.2
Ciclev10019729m.g Citrus clementina HOM05D006020 ORTHO05D007665 3.8e-123 446.0 530 50.2
Glyma.18G171900 Glycine max HOM05D006020 ORTHO05D007665 8.5e-123 444.9 522 47.9
FvH4_2g19230 Fragaria vesca HOM05D006020 ORTHO05D007665 1.5e-122 444.1 524 50.6
Lj1C84T12 Lonicera japonica HOM05D006020 ORTHO05D007665 2.5e-122 443.4 441 55.1
Atru.chr5.2019 Acer truncatum HOM05D006020 ORTHO05D007665 9.4e-122 441.4 526 49.4
FAN24G1617 Fragaria x ananassa HOM05D006020 ORTHO05D007665 1.2e-121 441.0 481 51.8
Medtr7g058760 Medicago truncatula HOM05D006020 ORTHO05D007665 1.6e-121 440.7 523 47.4
Haze_24783 Corylus avellana HOM05D006020 ORTHO05D007665 2.7e-121 439.9 388 57.0
FAN27G2268 Fragaria x ananassa HOM05D006020 ORTHO05D007665 2.3e-120 436.8 524 50.4
TPR.G15290 Trifolium pratense HOM05D006020 ORTHO05D007665 5.2e-120 435.6 511 46.8
Manes.13G045000 Manihot esculenta HOM05D006020 ORTHO05D007665 6.8e-120 435.3 526 47.5
Phvul.008G124000 Phaseolus vulgaris HOM05D006020 ORTHO05D007665 6.8e-120 435.3 523 47.8
Eucgr.K03608 Eucalyptus grandis HOM05D006020 ORTHO05D007665 4.8e-118 429.1 437 53.8
VMungo1383G1607 Vigna mungo HOM05D006020 ORTHO05D007665 8.3e-118 428.3 440 52.3
Actinidia37585 Actinidia chinensis HOM05D006020 ORTHO05D007665 1.4e-117 427.6 494 49.8
MSTRG.17550 Avicennia marina HOM05D006020 ORTHO05D007665 7.0e-117 425.2 521 48.0
Migut.N02265 Erythranthe guttata HOM05D006020 ORTHO05D007665 7.0e-117 425.2 524 46.6
arahy.Tifrunner.gnm1.ann1.PQ4NGV Arachis hypogaea HOM05D006020 ORTHO05D007665 1.0e-115 421.4 483 48.2
Nitab4.5_0004922g0030 Nicotiana tabacum HOM05D006020 ORTHO05D007665 1.0e-115 421.4 440 52.5
PGR044G0586 Punica granatum HOM05D006020 ORTHO05D007665 1.0e-115 421.4 483 50.1
Nitab4.5_0002085g0020 Nicotiana tabacum HOM05D006020 ORTHO05D007665 1.3e-115 421.0 440 53.0
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 3.8e-115 419.5 500 48.2
Carub.0008s0856 Capsella rubella HOM05D006020 ORTHO05D007665 1.5e-114 417.5 526 46.4
FAN15G0009 Fragaria x ananassa HOM05D006020 ORTHO05D007665 3.2e-114 416.4 577 45.9
Thhalv10004024m.g Eutrema salsugineum HOM05D006020 ORTHO05D007665 4.7e-113 412.5 525 46.9
Aa31sc866G30 Aethionema arabicum HOM05D006020 ORTHO05D007665 1.4e-112 411.0 536 45.5
AL8G22000 Arabidopsis lyrata HOM05D006020 ORTHO05D007665 4.0e-112 409.5 526 47.0
AT5G48830 Arabidopsis thaliana HOM05D006020 ORTHO05D007665 6.8e-112 408.7 523 46.3
CARHR182910 Cardamine hirsuta HOM05D006020 ORTHO05D007665 8.8e-112 408.3 526 47.0
CAN.G771.64 Capsicum annuum HOM05D006020 ORTHO05D007665 1.5e-111 407.5 435 49.9
Oeu042519.1 Olea europaea HOM05D006020 ORTHO05D007665 5.7e-111 405.6 489 48.1
Nn1g07811 Nelumbo nucifera HOM05D006020 ORTHO05D007665 3.7e-110 402.9 524 45.6
Sp2g19230 Schrenkiella parvula HOM05D006020 ORTHO05D007665 3.7e-110 402.9 526 47.0
Solyc09g061420.3 Solanum lycopersicum HOM05D006020 ORTHO05D007665 4.9e-110 402.5 447 50.8
BolC2t11751H Brassica oleracea HOM05D006020 ORTHO05D007665 5.9e-108 395.6 519 46.6
MBI10_g05712_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.3e-107 394.4 445 49.4
Nitab4.5_0000045g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 1.3e-107 394.4 449 50.3
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 1.7e-107 394.0 518 46.3
BcaC06g30754 Brassica carinata HOM05D006020 ORTHO05D007665 2.3e-107 393.7 522 46.4
THA.LOC104818953 Tarenaya hassleriana HOM05D006020 ORTHO05D007665 2.9e-107 393.3 446 51.1
BcaB07g30043 Brassica carinata HOM05D006020 ORTHO05D007665 3.8e-107 392.9 448 50.7
Cc01_g17190 Coffea canephora HOM05D006020 ORTHO05D007665 3.8e-107 392.9 524 45.2
Nitab4.5_0001872g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 5.0e-107 392.5 450 50.0
BolC7t44464H Brassica oleracea HOM05D006020 ORTHO05D007665 6.6e-107 392.1 518 46.7
BcaC03g17676 Brassica carinata HOM05D006020 ORTHO05D007665 8.6e-107 391.7 518 46.1
C02p56820 Brassica napus HOM05D006020 ORTHO05D007665 8.6e-107 391.7 518 46.1
BraA06t26802Z Brassica rapa HOM05D006020 ORTHO05D007665 1.1e-106 391.3 528 45.8
C07p39450 Brassica napus HOM05D006020 ORTHO05D007665 1.9e-106 390.6 518 46.3
HanXRQChr10g0287321 Helianthus annuus HOM05D006020 ORTHO05D007665 7.3e-106 388.7 467 46.7
Sc05g0002440 Simmondsia chinensis HOM05D006020 ORTHO05D007665 9.5e-106 388.3 483 46.0
A02p37730 Brassica napus HOM05D006020 ORTHO05D007665 2.8e-105 386.7 444 50.7
BraA02t08755Z Brassica rapa HOM05D006020 ORTHO05D007665 6.1e-105 385.6 444 50.5
ECA236G4144 Erigeron canadensis HOM05D006020 ORTHO05D007665 4.0e-104 382.9 521 43.2
SalBow2G1017 Salvia bowleyana HOM05D006020 ORTHO05D007665 2.4e-101 373.6 530 44.0
Hund05517 Selenicereus undatus HOM05D006020 ORTHO05D007665 2.0e-100 370.5 485 44.3
ATR0736G004 Amborella trichopoda HOM05D006020 ORTHO05D007665 3.5e-100 369.8 423 46.6
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 1.0e-99 368.2 524 42.9
TAR362G0890 Trochodendron aralioides HOM05D006020 ORTHO05D007665 1.3e-99 367.9 355 54.9
vmacro02750 Vaccinium macrocarpon HOM05D006020 ORTHO05D007665 2.3e-99 367.1 560 41.1
Aqoxy5G00068 Aquilegia oxysepala HOM05D006020 ORTHO05D007665 6.6e-99 365.5 522 41.8
Sopen09g024240 Solanum pennellii HOM05D006020 ORTHO05D007665 9.5e-98 361.7 535 42.2
Glyma.08G355500 Glycine max HOM05D006020 ORTHO05D007665 2.8e-97 360.1 467 43.0
EL10Ac7g17782 Beta vulgaris HOM05D006020 ORTHO05D007665 1.0e-96 358.2 479 43.0
PSO674G0123 Papaver somniferum HOM05D006020 ORTHO05D007665 3.1e-96 356.7 518 41.9
AUR62031841 Chenopodium quinoa HOM05D006020 ORTHO05D007665 1.2e-92 344.7 500 40.4
AUR62008869 Chenopodium quinoa HOM05D006020 ORTHO05D007665 3.1e-88 330.1 492 39.6
CDE06G1596 Ceratophyllum demersum HOM05D006020 ORTHO05D007665 8.3e-86 322.0 371 48.5
Ah.08g213940 Amaranthus hybridus HOM05D006020 ORTHO05D007665 4.1e-85 319.7 382 45.5
PSO170G4604 Papaver somniferum HOM05D006020 ORTHO05D007665 5.6e-82 309.3 478 40.0
MBI19_g27116_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.3e-78 298.1 308 52.3
HPP92_017884 Vanilla planifolia HOM05D006020 ORTHO05D007665 6.0e-76 289.3 536 36.9
Zm00001eb241910 Zea mays HOM05D006020 ORTHO05D007665 3.0e-75 287.0 443 40.0
SEGI_37377 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 2.2e-70 270.8 495 36.2
Actinidia30087 Actinidia chinensis HOM05D006020 ORTHO05D007665 2.4e-69 267.3 209 64.6
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 1.0e-67 261.9 379 39.8
arahy.Tifrunner.gnm1.ann1.3CP2KK Arachis hypogaea HOM05D001055 ORTHO05D000867 6.4e-62 242.7 188 64.9
SGA_v2.0_scaffold42G16144 Striga asiatica HOM05D006020 ORTHO05D007665 2.4e-56 224.2 312 41.7
Peaxi162Scf00107g00133 Petunia axillaris HOM05D006020 ORTHO05D007665 2.0e-55 221.1 447 37.4
Psat3g144000 Pisum sativum HOM05D006020 ORTHO05D007665 2.8e-49 200.7 142 66.2
MBI01_g07173_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 4.0e-48 196.8 286 40.9
Mapoly0173s0025 Marchantia polymorpha HOM05D006020 ORTHO05D007665 1.7e-46 191.4 445 31.5
MBI09_g17752_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 5.5e-45 186.4 308 39.6
SEGI_14686 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 6.0e-44 183.0 237 43.5
HPP92_017879 Vanilla planifolia HOM05D006020 ORTHO05D007665 7.4e-42 176.0 280 37.9
AagrBONN_evm.TU.Sc2ySwM_344.2296 Anthoceros agrestis HOM05D006020 ORTHO05D007665 4.8e-41 173.3 454 32.2
SMO115G0313 Selaginella moellendorffii HOM05D006020 ORTHO05D007665 1.1e-40 172.2 478 29.5
Pp3c24_4300 Physcomitrium patens HOM05D006020 ORTHO05D007665 1.7e-38 164.9 462 29.0
arahy.Tifrunner.gnm1.ann1.PG1H4F Arachis hypogaea HOM05D006020 ORTHO05D007665 3.0e-35 154.1 277 35.7
Psat3g144040 Pisum sativum HOM05D006020 ORTHO05D007665 2.2e-33 147.9 270 37.8
unitig_85.g27279 Utricularia gibba HOM05D006020 ORTHO05D007665 2.4e-32 144.4 141 49.6
MBI16_g14987_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.2e-31 142.1 125 58.4
Cpa.g.sc8.167 Carica papaya HOM05D006020 ORTHO05D007665 8.5e-30 136.0 115 57.4
FAN15G1634 Fragaria x ananassa HOM05D006020 ORTHO05D007665 8.5e-30 136.0 269 38.3
MELO3C035444.2 Cucumis melo HOM05D006020 ORTHO05D007665 8.5e-22 109.4 62 87.1
MBI12_g18650_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.1e-18 99.0 123 44.7
CBR_g31943 Chara braunii HOM05D006020 ORTHO05D007665 2.2e-14 84.7 68 60.3
PRCOL_00001532 Prasinoderma coloniale HOM05D006020 ORTHO05D007665 3.8e-14 84.0 188 30.3
Cpa.g.sc8.168 Carica papaya HOM05D006020 ORTHO05D007665 4.1e-08 63.9 129 39.5
MBI16_g14988_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 5.3e-08 63.5 94 38.3
MBI12_g40856_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.6e-07 62.0 78 41.0
MCO16G349 Micromonas commoda HOM05D006020 ORTHO05D007665 5.0e-06 57.0 63 41.3


User provided reference genes

Program Settings