Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012712.2 Cucumis melo HOM05D007279 ORTHO05D009212 8.8e-119 430.3 211 100.0
CsaV3_7G022180 Cucumis sativus L. HOM05D007279 ORTHO05D009212 4.2e-113 411.4 211 95.7
ClCG09G021820 Citrullus lanatus HOM05D007279 ORTHO05D009212 1.1e-100 370.2 211 88.2
Sed0026443 Sechium edule HOM05D007279 ORTHO05D009212 6.4e-93 344.4 206 84.5
Duzib093G1369 Durio zibethinus HOM05D007279 ORTHO05D009212 1.2e-75 287.0 210 69.5
Dinv27265 Davidia involucrata HOM05D007279 ORTHO05D009212 2.5e-73 279.3 208 70.7
CANSAT25G0430 Cannabis sativa HOM05D007279 ORTHO05D009212 3.3e-73 278.9 213 70.0
QL09p032239 Quercus lobata HOM05D007279 ORTHO05D009212 2.8e-72 275.8 214 67.3
TWI34G0215 Tripterygium wilfordii HOM05D007279 ORTHO05D009212 2.8e-72 275.8 210 68.6
Potri.005G183000 Populus trichocarpa HOM05D007279 ORTHO05D009212 3.6e-72 275.4 204 70.1
GSVIVG01008801001 Vitis vinifera HOM05D007279 ORTHO05D009212 3.6e-72 275.4 213 68.1
PGR044G1698 Punica granatum HOM05D007279 ORTHO05D009212 4.8e-72 275.0 214 67.8
Cfa018422 Carpinus fangiana HOM05D007279 ORTHO05D009212 1.8e-71 273.1 208 68.8
Gohir.A02G110900 Gossypium hirsutum HOM05D007279 ORTHO05D009212 1.8e-71 273.1 206 68.0
Lalb_Chr08g0241031 Lupinus albus HOM05D007279 ORTHO05D009212 2.4e-71 272.7 214 69.2
Gohir.D03G063100 Gossypium hirsutum HOM05D007279 ORTHO05D009212 4.0e-71 271.9 207 68.6
Gorai.013G108300 Gossypium raimondii HOM05D007279 ORTHO05D009212 4.0e-71 271.9 207 68.6
MD15G1133300 Malus domestica HOM05D007279 ORTHO05D009212 4.0e-71 271.9 209 64.6
COL.COLO4_33390 Corchorus olitorius HOM05D007279 ORTHO05D009212 6.9e-71 271.2 214 66.8
EL10Ac1g01365 Beta vulgaris HOM05D007279 ORTHO05D009212 9.0e-71 270.8 206 69.4
Sabra05G0138700 Salix brachista HOM05D007279 ORTHO05D009212 9.0e-71 270.8 211 69.2
MSTRG.1407 Avicennia marina HOM05D007279 ORTHO05D009212 1.2e-70 270.4 212 66.0
Prupe.1G488900 Prunus persica HOM05D007279 ORTHO05D009212 1.2e-70 270.4 213 67.6
FAN20G2640 Fragaria x ananassa HOM05D007279 ORTHO05D009212 2.0e-70 269.6 208 66.8
FAN27G1298 Fragaria x ananassa HOM05D007279 ORTHO05D009212 2.0e-70 269.6 209 67.0
Glyma.06G118000 Glycine max HOM05D007279 ORTHO05D009212 2.0e-70 269.6 215 66.5
FvH4_2g27960 Fragaria vesca HOM05D007279 ORTHO05D009212 3.4e-70 268.9 209 66.5
CSS0035764 Camellia sinensis var. sinensis HOM05D007279 ORTHO05D009212 1.3e-69 266.9 208 68.3
Manes.02G169000 Manihot esculenta HOM05D007279 ORTHO05D009212 1.3e-69 266.9 208 66.3
FAN24G0438 Fragaria x ananassa HOM05D007279 ORTHO05D009212 1.7e-69 266.5 209 66.0
Glyma.04G245200 Glycine max HOM05D007279 ORTHO05D009212 1.7e-69 266.5 214 66.8
Eucgr.F03852 Eucalyptus grandis HOM05D007279 ORTHO05D009212 4.9e-69 265.0 211 68.2
RcHm_v2.0_Chr6g0296781 Rosa chinensis HOM05D007279 ORTHO05D009212 8.4e-69 264.2 209 65.6
AUR62007704 Chenopodium quinoa HOM05D007279 ORTHO05D009212 3.2e-68 262.3 206 67.0
arahy.Tifrunner.gnm1.ann1.03R76N Arachis hypogaea HOM05D007279 ORTHO05D009212 4.2e-68 261.9 210 66.2
arahy.Tifrunner.gnm1.ann1.G5JU44 Arachis hypogaea HOM05D007279 ORTHO05D009212 4.2e-68 261.9 210 66.2
Rhsim02G0114000 Rhododendron simsii HOM05D007279 ORTHO05D009212 4.2e-68 261.9 196 66.8
vmacro17341 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 5.4e-68 261.5 221 63.8
Ah.05g169060 Amaranthus hybridus HOM05D007279 ORTHO05D009212 9.3e-68 260.8 204 65.7
Lsat_1_v5_gn_1_7161 Lactuca sativa HOM05D007279 ORTHO05D009212 9.3e-68 260.8 213 65.7
CiPaw.16G022500 Carya illinoinensis HOM05D007279 ORTHO05D009212 1.2e-67 260.4 206 67.5
Hma1.2p1_0880F.1_g231840 Hydrangea macrophylla HOM05D007279 ORTHO05D009212 1.2e-67 260.4 212 64.6
Lj4A679T22 Lonicera japonica HOM05D007279 ORTHO05D009212 2.1e-67 259.6 198 65.7
Medtr3g088645 Medicago truncatula HOM05D007279 ORTHO05D009212 2.1e-67 259.6 212 63.7
Ca_16613_v3 Cicer arietinum L. HOM05D007279 ORTHO05D009212 2.7e-67 259.2 211 61.6
Rhsim02G0113400 Rhododendron simsii HOM05D007279 ORTHO05D009212 2.7e-67 259.2 195 67.7
Lj1g0002247 Lotus japonicus HOM05D007279 ORTHO05D009212 4.6e-67 258.5 213 62.9
AUR62013436 Chenopodium quinoa HOM05D007279 ORTHO05D009212 7.9e-67 257.7 206 66.0
Lj4A677T28 Lonicera japonica HOM05D007279 ORTHO05D009212 1.3e-66 256.9 198 64.1
Atru.chr13.1590 Acer truncatum HOM05D007279 ORTHO05D009212 1.7e-66 256.5 209 62.2
Ciclev10002484m.g Citrus clementina HOM05D007279 ORTHO05D009212 2.3e-66 256.1 209 63.2
Psat5g084400 Pisum sativum HOM05D007279 ORTHO05D009212 3.0e-66 255.8 213 63.4
TAR628G0029 Trochodendron aralioides HOM05D007279 ORTHO05D009212 3.0e-66 255.8 208 66.8
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 3.9e-66 255.4 188 69.1
Sabra02G0061000 Salix brachista HOM05D007279 ORTHO05D009212 3.9e-66 255.4 146 84.9
VMungo1309G2060 Vigna mungo HOM05D007279 ORTHO05D009212 5.1e-66 255.0 212 62.7
CARHR246340 Cardamine hirsuta HOM05D007279 ORTHO05D009212 8.7e-66 254.2 165 73.9
Thhalv10026209m.g Eutrema salsugineum HOM05D007279 ORTHO05D009212 8.7e-66 254.2 161 73.3
Rhsim02G0113900 Rhododendron simsii HOM05D007279 ORTHO05D009212 8.7e-66 254.2 204 65.2
Phvul.009G130400 Phaseolus vulgaris HOM05D007279 ORTHO05D009212 2.5e-65 252.7 212 62.3
A08p22940 Brassica napus HOM05D007279 ORTHO05D009212 3.3e-65 252.3 168 71.4
Migut.C01071 Erythranthe guttata HOM05D007279 ORTHO05D009212 3.3e-65 252.3 207 63.3
THA.LOC104808254 Tarenaya hassleriana HOM05D007279 ORTHO05D009212 3.3e-65 252.3 201 62.7
PSO170G3576 Papaver somniferum HOM05D007279 ORTHO05D009212 4.3e-65 251.9 201 62.7
Aa31LG6G14860 Aethionema arabicum HOM05D007279 ORTHO05D009212 5.6e-65 251.5 169 74.0
BraA08t34256Z Brassica rapa HOM05D007279 ORTHO05D009212 7.3e-65 251.1 168 70.8
AL7G12720 Arabidopsis lyrata HOM05D007279 ORTHO05D009212 9.6e-65 250.8 165 73.3
AT4G37925 Arabidopsis thaliana HOM05D007279 ORTHO05D009212 9.6e-65 250.8 165 73.3
BcaB03g12324 Brassica carinata HOM05D007279 ORTHO05D009212 9.6e-65 250.8 168 70.8
Aqoxy6G00304 Aquilegia oxysepala HOM05D007279 ORTHO05D009212 1.3e-64 250.4 195 68.7
BcaC01g00366 Brassica carinata HOM05D007279 ORTHO05D009212 1.3e-64 250.4 168 70.2
C03p78920 Brassica napus HOM05D007279 ORTHO05D009212 1.3e-64 250.4 168 70.2
BolC3t20136H Brassica oleracea HOM05D007279 ORTHO05D009212 1.3e-64 250.4 168 70.2
Nn5g28445 Nelumbo nucifera HOM05D007279 ORTHO05D009212 2.1e-64 249.6 208 63.9
Sp7g35570 Schrenkiella parvula HOM05D007279 ORTHO05D009212 2.1e-64 249.6 164 72.6
Nitab4.5_0003485g0020 Nicotiana tabacum HOM05D007279 ORTHO05D009212 2.8e-64 249.2 207 65.2
PSO528G0084 Papaver somniferum HOM05D007279 ORTHO05D009212 2.8e-64 249.2 203 65.0
CAN.G405.7 Capsicum annuum HOM05D007279 ORTHO05D009212 6.2e-64 248.1 206 64.6
Peaxi162Scf00066g00422 Petunia axillaris HOM05D007279 ORTHO05D009212 1.8e-63 246.5 211 63.5
Carub.0007s0229 Capsella rubella HOM05D007279 ORTHO05D009212 3.1e-63 245.7 165 72.1
Nitab4.5_0000317g0110 Nicotiana tabacum HOM05D007279 ORTHO05D009212 1.2e-62 243.8 211 64.0
PGSC0003DMG400025319 Solanum tuberosum HOM05D007279 ORTHO05D009212 1.2e-62 243.8 211 64.0
HanXRQChr02g0045151 Helianthus annuus HOM05D007279 ORTHO05D009212 1.5e-62 243.4 161 73.3
MBI03_g13490_MAGBIO Magnolia biondii HOM05D007279 ORTHO05D009212 2.0e-62 243.0 126 91.3
Solyc04g057980.3 Solanum lycopersicum HOM05D007279 ORTHO05D009212 2.6e-62 242.7 212 63.2
Sopen04g025840 Solanum pennellii HOM05D007279 ORTHO05D009212 1.3e-61 240.4 212 63.2
unitig_46.g18082 Utricularia gibba HOM05D007279 ORTHO05D009212 2.4e-60 236.1 200 61.5
Cc10_g13680 Coffea canephora HOM05D007279 ORTHO05D009212 3.2e-60 235.7 203 63.1
ATR0681G064 Amborella trichopoda HOM05D007279 ORTHO05D009212 4.2e-60 235.3 126 87.3
DCAR_016660 Daucus carota HOM05D007279 ORTHO05D009212 7.1e-60 234.6 193 64.8
ECA247G0566 Erigeron canadensis HOM05D000006 ORTHO05D000001 7.9e-59 231.1 143 76.9
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 3.7e-56 222.2 209 58.4
Os04g0539000 Oryza sativa ssp. japonica HOM05D007279 ORTHO05D009212 4.8e-56 221.9 147 70.7
Zm00001eb075370 Zea mays HOM05D007279 ORTHO05D009212 5.8e-54 214.9 166 65.1
SEGI_28724 Sequoiadendron giganteum HOM05D007279 ORTHO05D009212 4.2e-52 208.8 137 72.3
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 1.2e-51 207.2 205 55.1
Potri.002G077600 Populus trichocarpa HOM05D007279 ORTHO05D009212 1.8e-50 203.4 172 61.0
AL3G19570 Arabidopsis lyrata HOM05D007279 ORTHO05D009212 3.5e-43 179.1 155 60.6
CBR_g26037 Chara braunii HOM05D007279 ORTHO05D009212 6.1e-43 178.3 137 63.5
Pp3c1_14910 Physcomitrium patens HOM05D007279 ORTHO05D009212 6.1e-43 178.3 138 63.0
Thecc.08G133700 Theobroma cacao HOM05D007279 ORTHO05D009212 3.3e-41 172.6 151 58.9
SMO339G0044 Selaginella moellendorffii HOM05D007279 ORTHO05D009212 4.3e-41 172.2 133 63.9
TPR.G6347 Trifolium pratense HOM05D007279 ORTHO05D009212 3.1e-39 166.0 91 83.5
vmacro17338 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 1.3e-37 160.6 159 56.6
Mapoly0063s0013 Marchantia polymorpha HOM05D007279 ORTHO05D009212 5.0e-37 158.7 132 59.1
AagrBONN_evm.TU.Sc2ySwM_344.1177 Anthoceros agrestis HOM05D007279 ORTHO05D009212 1.2e-35 154.1 143 55.2
TAR623G1519 Trochodendron aralioides HOM05D007279 ORTHO05D009212 1.3e-32 144.1 147 52.4
vmacro17312 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 8.2e-32 141.4 110 65.5
SalBow7G1271 Salvia bowleyana HOM05D007279 ORTHO05D009212 5.5e-28 128.6 196 41.8
Zm00001eb427570 Zea mays HOM05D007279 ORTHO05D009212 3.5e-22 109.4 75 69.3
Oeu047171.1 Olea europaea HOM05D004195 ORTHO05D005309 8.8e-18 94.7 126 42.1


User provided reference genes

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