Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012484.2 Cucumis melo HOM05D002974 ORTHO05D002992 2.7e-71 271.9 141 100.0
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 2.7e-55 218.8 133 83.5
ClCG05G026910 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.1e-45 186.8 147 72.1
Sed0006618 Sechium edule HOM05D002974 ORTHO05D002992 8.5e-25 117.5 150 52.7
Sed0000723 Sechium edule HOM05D002974 ORTHO05D002992 1.1e-24 117.1 120 64.2
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 4.8e-12 75.1 82 58.5
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 4.8e-12 75.1 82 58.5
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 6.3e-12 74.7 145 39.3
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 6.3e-12 74.7 134 44.0
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.1e-11 72.4 85 54.1
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 5.3e-11 71.6 85 54.1
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.3e-11 71.6 85 54.1
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.3e-11 71.6 85 54.1
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 7.0e-11 71.2 55 74.5
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 9.1e-11 70.9 85 54.1
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 1.2e-10 70.5 52 73.1
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 3.5e-10 68.9 128 37.5
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 4.5e-10 68.6 57 70.2
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 4.5e-10 68.6 77 54.5
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 5.9e-10 68.2 77 54.5
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 7.7e-10 67.8 59 67.8
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 7.7e-10 67.8 52 71.2
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.0e-09 67.4 88 50.0
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 1.7e-09 66.6 82 51.2
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 1.7e-09 66.6 115 39.1
QL04p017793 Quercus lobata HOM05D002974 ORTHO05D002992 1.7e-09 66.6 60 63.3
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 2.2e-09 66.2 74 55.4
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 2.9e-09 65.9 52 67.3
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 5.0e-09 65.1 52 67.3
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 6.5e-09 64.7 126 37.3
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 8.5e-09 64.3 59 64.4
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 1.1e-08 63.9 82 53.7
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 1.1e-08 63.9 127 40.2
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 1.5e-08 63.5 125 40.8
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 1.9e-08 63.2 55 67.3
MSTRG.5073 Avicennia marina HOM05D002974 ORTHO05D002992 2.5e-08 62.8 52 63.5
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 2.5e-08 62.8 47 68.1
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 3.2e-08 62.4 141 39.7
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 4.2e-08 62.0 111 41.4
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 4.2e-08 62.0 55 65.5
Eucgr.G03218 Eucalyptus grandis HOM05D002974 ORTHO05D002992 5.5e-08 61.6 82 47.6
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 7.2e-08 61.2 150 34.7
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 7.2e-08 61.2 59 59.3
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 9.4e-08 60.8 93 47.3
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 9.4e-08 60.8 61 60.7
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 9.4e-08 60.8 61 60.7
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 9.4e-08 60.8 112 38.4
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 9.4e-08 60.8 62 56.5
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.2e-07 60.5 65 58.5
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 1.2e-07 60.5 65 58.5
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 1.6e-07 60.1 53 66.0
Oeu011571.1 Olea europaea HOM05D002974 ORTHO05D002992 1.6e-07 60.1 126 34.1
SGA_v2.0_scaffold43G16289 Striga asiatica HOM05D002974 ORTHO05D002992 2.1e-07 59.7 51 60.8
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 2.1e-07 59.7 54 68.5
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.7e-07 59.3 70 55.7
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 2.7e-07 59.3 70 55.7
SGA_v2.0_scaffold232G43495 Striga asiatica HOM05D002974 ORTHO05D002992 2.7e-07 59.3 108 38.0
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 2.7e-07 59.3 89 44.9
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 3.6e-07 58.9 96 43.8
Sc11g0006360 Simmondsia chinensis HOM05D002974 ORTHO05D002992 3.6e-07 58.9 64 53.1
EL10Ac2g02772 Beta vulgaris HOM05D012416 ORTHO05D002992 4.7e-07 58.5 52 59.6
Migut.B01240 Erythranthe guttata HOM05D002974 ORTHO05D002992 4.7e-07 58.5 50 62.0
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 4.7e-07 58.5 58 58.6
Peaxi162Scf00082g00006 Petunia axillaris HOM05D002974 ORTHO05D002992 6.1e-07 58.2 71 49.3
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 8.0e-07 57.8 55 60.0
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 8.0e-07 57.8 65 55.4
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 8.0e-07 57.8 50 64.0
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 1.0e-06 57.4 45 66.7
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 1.0e-06 57.4 49 61.2
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.0e-06 57.4 51 64.7
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 2.3e-06 56.2 48 68.8
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 2.3e-06 56.2 59 61.0
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 2.3e-06 56.2 64 56.2
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 2.3e-06 56.2 132 31.1
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.3e-06 56.2 46 65.2
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 2.3e-06 56.2 46 63.0
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 3.0e-06 55.8 55 56.4
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 3.0e-06 55.8 49 59.2
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 3.0e-06 55.8 70 54.3
Phvul.005G024800 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 3.0e-06 55.8 52 65.4
SalBow5G5227 Salvia bowleyana HOM05D002974 ORTHO05D002992 3.0e-06 55.8 48 64.6
VMungo1080G0254 Vigna mungo HOM05D002974 ORTHO05D002992 3.0e-06 55.8 52 63.5
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 4.0e-06 55.5 51 56.9
Lalb_Chr21g0315251 Lupinus albus HOM05D002974 ORTHO05D002992 6.7e-06 54.7 56 60.7
Os05g0390800 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 6.7e-06 54.7 87 39.1
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 6.7e-06 54.7 58 56.9
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 8.8e-06 54.3 44 63.6
AUR62032633 Chenopodium quinoa HOM05D012416 ORTHO05D002992 8.8e-06 54.3 66 50.0
unitig_26.g9507 Utricularia gibba HOM05D002974 ORTHO05D002992 8.8e-06 54.3 54 61.1


User provided reference genes

Program Settings