Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012404.2 Cucumis melo HOM05D007188 ORTHO05D009102 1.5e-113 412.9 210 100.0
CsaV3_5G036040 Cucumis sativus L. HOM05D007188 ORTHO05D009102 1.9e-105 386.0 208 93.8
ClCG05G021230 Citrullus lanatus HOM05D007188 ORTHO05D009102 1.7e-93 346.3 213 83.6
Sed0000210 Sechium edule HOM05D007188 ORTHO05D009102 3.6e-88 328.6 207 79.2
CiPaw.02G171800 Carya illinoinensis HOM05D007188 ORTHO05D009102 1.2e-64 250.4 177 74.6
QL08p054189 Quercus lobata HOM05D007188 ORTHO05D009102 1.2e-64 250.4 215 62.3
Cfa001805 Carpinus fangiana HOM05D007188 ORTHO05D009102 2.1e-64 249.6 213 64.3
Duzib106G0123 Durio zibethinus HOM05D007188 ORTHO05D009102 3.6e-64 248.8 188 69.1
Glyma.20G183500 Glycine max HOM05D007188 ORTHO05D009102 4.7e-64 248.4 167 73.7
Nn6g35269 Nelumbo nucifera HOM05D007188 ORTHO05D009102 2.4e-63 246.1 173 69.9
GSVIVG01016213001 Vitis vinifera HOM05D007188 ORTHO05D009102 3.1e-63 245.7 173 71.7
Phvul.007G099300 Phaseolus vulgaris HOM05D007188 ORTHO05D009102 8.9e-63 244.2 179 68.2
Manes.07G133140 Manihot esculenta HOM05D007188 ORTHO05D009102 1.2e-62 243.8 210 63.3
Sabra08G0023300 Salix brachista HOM05D007188 ORTHO05D009102 1.2e-62 243.8 212 63.2
TWI38G2147 Tripterygium wilfordii HOM05D007188 ORTHO05D009102 2.0e-62 243.0 208 63.9
Eucgr.G02872 Eucalyptus grandis HOM05D007188 ORTHO05D009102 4.4e-62 241.9 215 57.7
Potri.008G034900 Populus trichocarpa HOM05D007188 ORTHO05D009102 9.9e-62 240.7 207 65.7
VMungo0720G2339 Vigna mungo HOM05D007188 ORTHO05D009102 9.9e-62 240.7 168 69.6
CANSAT56G0643 Cannabis sativa HOM05D007188 ORTHO05D009102 2.2e-61 239.6 213 60.6
arahy.Tifrunner.gnm1.ann1.3RW2WH Arachis hypogaea HOM05D007188 ORTHO05D009102 8.4e-61 237.7 209 62.2
TPR.G10293 Trifolium pratense HOM05D007188 ORTHO05D009102 1.4e-60 236.9 190 64.7
TAR623G0008 Trochodendron aralioides HOM05D007188 ORTHO05D009102 1.9e-60 236.5 172 68.6
arahy.Tifrunner.gnm1.ann1.CRM3NE Arachis hypogaea HOM05D007188 ORTHO05D009102 3.2e-60 235.7 149 75.2
Gohir.A05G293300 Gossypium hirsutum HOM05D007188 ORTHO05D009102 4.2e-60 235.3 158 73.4
Gohir.D05G294000 Gossypium hirsutum HOM05D007188 ORTHO05D009102 5.4e-60 235.0 158 73.4
Actinidia38870 Actinidia chinensis HOM05D007188 ORTHO05D009102 1.2e-59 233.8 176 65.9
Lalb_Chr21g0313651 Lupinus albus HOM05D007188 ORTHO05D009102 1.2e-59 233.8 148 76.4
Aqoxy1G01136 Aquilegia oxysepala HOM05D007188 ORTHO05D009102 1.6e-59 233.4 164 69.5
Gorai.009G310600 Gossypium raimondii HOM05D007188 ORTHO05D009102 2.7e-59 232.6 158 72.2
Medtr1g094160 Medicago truncatula HOM05D007188 ORTHO05D009102 6.0e-59 231.5 178 64.0
CSS0007320 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 1.7e-58 229.9 155 71.6
CSS0035829 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 2.3e-58 229.6 155 71.0
Lj5g0026151 Lotus japonicus HOM05D007188 ORTHO05D009102 2.3e-58 229.6 165 67.9
Cc02_g10880 Coffea canephora HOM05D007188 ORTHO05D009102 8.7e-58 227.6 163 71.2
MD01G1102700 Malus domestica HOM05D007188 ORTHO05D009102 8.7e-58 227.6 221 58.8
Psat6g181120 Pisum sativum HOM05D007188 ORTHO05D009102 8.7e-58 227.6 184 64.7
RcHm_v2.0_Chr1g0362491 Rosa chinensis HOM05D007188 ORTHO05D009102 1.1e-57 227.3 209 58.9
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 3.3e-57 225.7 149 73.2
Ca_10538_v3 Cicer arietinum L. HOM05D007188 ORTHO05D009102 3.3e-57 225.7 176 65.3
Lsat_1_v5_gn_8_20860 Lactuca sativa HOM05D007188 ORTHO05D009102 4.3e-57 225.3 201 58.2
Aa31LG3G3010 Aethionema arabicum HOM05D007188 ORTHO05D009102 5.6e-57 224.9 191 61.8
Rhsim09G0148000 Rhododendron simsii HOM05D007188 ORTHO05D009102 7.3e-57 224.6 144 74.3
Sp3g08680 Schrenkiella parvula HOM05D007188 ORTHO05D009102 9.6e-57 224.2 208 57.7
RhsimUnG0185400 Rhododendron simsii HOM05D007188 ORTHO05D009102 1.3e-56 223.8 144 74.3
C03p44120 Brassica napus HOM05D007188 ORTHO05D009102 6.2e-56 221.5 182 62.6
ECA233G0714 Erigeron canadensis HOM05D007188 ORTHO05D009102 6.2e-56 221.5 155 69.0
AL3G21760 Arabidopsis lyrata HOM05D007188 ORTHO05D009102 8.1e-56 221.1 162 67.3
BolC3t16687H Brassica oleracea HOM05D007188 ORTHO05D009102 8.1e-56 221.1 182 62.1
Thhalv10021497m.g Eutrema salsugineum HOM05D007188 ORTHO05D009102 8.1e-56 221.1 159 67.3
Atru.chr12.855 Acer truncatum HOM05D007188 ORTHO05D009102 1.1e-55 220.7 150 73.3
Carub.0003s0959 Capsella rubella HOM05D007188 ORTHO05D009102 1.4e-55 220.3 198 58.1
CDE09G0470 Ceratophyllum demersum HOM05D007188 ORTHO05D009102 1.4e-55 220.3 164 64.0
CARHR084890 Cardamine hirsuta HOM05D007188 ORTHO05D009102 1.8e-55 219.9 161 67.7
Migut.F01952 Erythranthe guttata HOM05D007188 ORTHO05D009102 1.8e-55 219.9 209 58.4
Sopen05g034000 Solanum pennellii HOM05D007188 ORTHO05D009102 1.8e-55 219.9 171 65.5
AT3G10405 Arabidopsis thaliana HOM05D007188 ORTHO05D009102 2.4e-55 219.5 199 58.8
Solyc05g055550.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 2.4e-55 219.5 171 65.5
PGSC0003DMG400023370 Solanum tuberosum HOM05D007188 ORTHO05D009102 2.4e-55 219.5 170 64.1
SGA_v2.0_scaffold62G21381 Striga asiatica HOM05D007188 ORTHO05D009102 2.4e-55 219.5 198 58.1
HanXRQChr08g0218401 Helianthus annuus HOM05D007188 ORTHO05D009102 3.1e-55 219.2 191 58.1
Sc06g0002050 Simmondsia chinensis HOM05D007188 ORTHO05D009102 4.0e-55 218.8 143 74.1
SalBow4G2327 Salvia bowleyana HOM05D007188 ORTHO05D009102 6.9e-55 218.0 156 67.9
unitig_88.g27814 Utricularia gibba HOM05D007188 ORTHO05D009102 6.9e-55 218.0 162 67.3
CAN.G694.38 Capsicum annuum HOM05D007188 ORTHO05D009102 9.0e-55 217.6 170 62.9
FAN06G0953 Fragaria x ananassa HOM05D007188 ORTHO05D009102 9.0e-55 217.6 208 57.2
FAN06G2123 Fragaria x ananassa HOM05D007188 ORTHO05D009102 9.0e-55 217.6 208 57.2
FAN10G2630 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.2e-54 217.2 208 57.2
Glyma.10G207400 Glycine max HOM05D007188 ORTHO05D009102 1.2e-54 217.2 168 65.5
A03p36520 Brassica napus HOM05D007188 ORTHO05D009102 3.4e-54 215.7 162 65.4
FAN03G0393 Fragaria x ananassa HOM05D007188 ORTHO05D009102 3.4e-54 215.7 208 57.2
FAN01G3175 Fragaria x ananassa HOM05D007188 ORTHO05D009102 5.8e-54 214.9 203 58.6
BraA03t12819Z Brassica rapa HOM05D007188 ORTHO05D009102 9.9e-54 214.2 162 64.8
Solyc02g033060.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 9.9e-54 214.2 171 64.3
AUR62014280 Chenopodium quinoa HOM05D007188 ORTHO05D009102 2.2e-53 213.0 176 63.6
THA.LOC104826897 Tarenaya hassleriana HOM05D007188 ORTHO05D009102 3.2e-52 209.1 180 61.7
Peaxi162Scf00176g01519 Petunia axillaris HOM05D007188 ORTHO05D009102 1.2e-51 207.2 138 71.7
Nitab4.5_0001760g0020 Nicotiana tabacum HOM05D007188 ORTHO05D009102 2.7e-51 206.1 178 58.4
PSO063G4012 Papaver somniferum HOM05D007188 ORTHO05D009102 4.6e-51 205.3 173 59.0
Zm00001eb022660 Zea mays HOM05D007188 ORTHO05D009102 2.3e-50 203.0 151 67.5
Os10g0545100 Oryza sativa ssp. japonica HOM05D007188 ORTHO05D009102 1.5e-49 200.3 158 61.4
Haze_16743 Corylus avellana HOM05D007188 ORTHO05D009102 7.3e-49 198.0 213 54.0
BcaC01g04184 Brassica carinata HOM05D007188 ORTHO05D009102 6.9e-47 191.4 185 54.6
Sopen02g011440 Solanum pennellii HOM05D007188 ORTHO05D009102 6.9e-47 191.4 130 70.0
Thecc.10G085100 Theobroma cacao HOM05D007188 ORTHO05D009102 6.9e-47 191.4 146 65.8
COL.COLO4_36178 Corchorus olitorius HOM05D007188 ORTHO05D009102 9.9e-46 187.6 205 53.2
Dinv31237 Davidia involucrata HOM05D007188 ORTHO05D009102 4.9e-45 185.3 133 69.9
EL10Ac4g08743 Beta vulgaris HOM05D007188 ORTHO05D009102 7.1e-44 181.4 147 61.9
Prupe.2G208300 Prunus persica HOM05D007188 ORTHO05D009102 1.0e-42 177.6 170 57.1
vmacro04839 Vaccinium macrocarpon HOM05D007188 ORTHO05D009102 9.6e-41 171.0 139 61.9
Hund14950 Selenicereus undatus HOM05D007188 ORTHO05D009102 2.1e-40 169.9 116 70.7
Pp3c2_18450 Physcomitrium patens HOM05D007188 ORTHO05D009102 8.1e-40 167.9 163 52.1
Mapoly0050s0048 Marchantia polymorpha HOM05D007188 ORTHO05D009102 9.0e-39 164.5 150 52.0
Mapoly0278s0008 Marchantia polymorpha HOM05D007188 ORTHO05D009102 9.0e-39 164.5 150 52.0
Nitab4.5_0000096g0330 Nicotiana tabacum HOM05D007188 ORTHO05D009102 2.1e-35 153.3 150 54.0
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 1.1e-33 147.5 154 46.8
Ciclev10033195m.g Citrus clementina HOM05D007188 ORTHO05D009102 6.2e-32 141.7 88 77.3
SMO358G0267 Selaginella moellendorffii HOM05D007188 ORTHO05D009102 8.4e-29 131.3 157 43.3
CBR_g28804 Chara braunii HOM05D007188 ORTHO05D009102 1.4e-23 114.0 182 35.2
FvH4_7g18710 Fragaria vesca HOM05D007188 ORTHO05D009102 6.9e-23 111.7 145 45.5
PSO339G6470 Papaver somniferum HOM05D007188 ORTHO05D009102 1.2e-22 110.9 113 50.4
SEGI_08985 Sequoiadendron giganteum HOM05D007188 ORTHO05D009102 8.5e-21 104.8 62 80.6
MCO11G330 Micromonas commoda HOM05D007188 ORTHO05D009102 2.4e-15 86.7 159 30.8
PRCOL_00002171 Prasinoderma coloniale HOM05D007188 ORTHO05D009102 5.3e-15 85.5 158 34.2
Rhsim09G0147800 Rhododendron simsii HOM05D007188 ORTHO05D009102 2.0e-14 83.6 174 33.3
Cre10.g464650 Chlamydomonas reinhardtii HOM05D007188 ORTHO05D009102 1.4e-12 77.4 128 32.0
FAN10G3168 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.9e-12 77.0 115 42.6
RhsimUnG0185100 Rhododendron simsii HOM05D007188 ORTHO05D009102 2.1e-11 73.6 207 30.4
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 4.4e-09 65.9 49 57.1
Oeu034116.1 Olea europaea HOM05D007188 ORTHO05D009102 2.8e-08 63.2 38 76.3
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 4.8e-08 62.4 51 62.7
vmacro04837 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 2.6e-06 56.6 39 66.7
AUR62034156 Chenopodium quinoa HOM05D007188 ORTHO05D009102 3.5e-06 56.2 67 47.8
VMungo1080G0524 Vigna mungo HOM05D007188 ORTHO05D008722 5.9e-06 55.5 31 77.4


User provided reference genes

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