Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 6.0e-138 494.2 255 100.0
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 2.9e-108 395.6 257 84.0
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 7.4e-96 354.4 257 77.8
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 8.2e-95 350.9 257 77.0
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 3.1e-94 349.0 251 77.3
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 9.4e-91 337.4 255 72.9
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 8.3e-63 244.6 255 56.1
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 2.4e-62 243.0 261 54.8
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 3.2e-62 242.7 267 55.8
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 7.0e-62 241.5 262 53.4
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 1.2e-61 240.7 262 53.4
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 7.8e-61 238.0 263 52.9
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 3.9e-60 235.7 263 54.4
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 1.5e-59 233.8 258 53.9
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 1.9e-59 233.4 289 50.2
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 9.5e-59 231.1 263 53.2
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 1.2e-58 230.7 264 53.8
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 1.6e-58 230.3 263 53.2
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 2.1e-58 229.9 258 53.9
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 4.7e-58 228.8 263 52.5
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 6.2e-58 228.4 265 51.7
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 8.1e-58 228.0 259 54.1
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 8.1e-58 228.0 263 51.0
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.8e-57 226.9 265 51.7
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 3.1e-57 226.1 258 51.2
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 3.1e-57 226.1 257 50.2
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 1.5e-56 223.8 237 54.9
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 3.4e-56 222.6 255 53.3
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 7.5e-56 221.5 259 50.6
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 1.3e-55 220.7 259 51.0
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 1.7e-55 220.3 256 52.3
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 4.9e-55 218.8 257 51.0
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 4.9e-55 218.8 257 49.0
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 5.4e-54 215.3 263 51.3
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 7.1e-54 214.9 258 48.8
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 9.2e-54 214.5 264 53.0
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 2.7e-53 213.0 260 51.5
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 3.5e-53 212.6 262 48.1
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 6.0e-53 211.8 261 49.8
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 1.0e-52 211.1 233 51.5
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 1.0e-52 211.1 236 52.1
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 8.6e-52 208.0 249 50.6
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 1.5e-51 207.2 257 50.2
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 2.5e-51 206.5 261 49.4
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 1.2e-50 204.1 236 48.3
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 3.6e-50 202.6 231 49.4
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 6.2e-50 201.8 222 49.5
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 6.2e-50 201.8 258 51.9
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 4.0e-49 199.1 260 49.6
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 8.9e-49 198.0 203 53.2
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 1.5e-48 197.2 216 51.9
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 2.0e-48 196.8 257 47.1
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 2.6e-48 196.4 260 48.1
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 4.4e-48 195.7 257 47.9
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 4.4e-48 195.7 232 46.1
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 4.4e-48 195.7 257 47.1
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 5.8e-48 195.3 258 50.4
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 7.6e-48 194.9 262 47.3
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 1.3e-47 194.1 259 45.6
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 1.7e-47 193.7 256 46.5
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 1.7e-47 193.7 157 72.0
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 4.9e-47 192.2 224 50.0
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 6.4e-47 191.8 253 47.8
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 8.3e-47 191.4 224 50.4
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 1.1e-46 191.0 267 46.1
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 1.9e-46 190.3 222 49.5
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.9e-46 190.3 263 45.6
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 3.2e-46 189.5 252 46.0
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 3.2e-46 189.5 252 46.0
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 3.2e-46 189.5 221 50.2
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 5.4e-46 188.7 223 49.8
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 1.2e-45 187.6 255 47.5
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 1.6e-45 187.2 255 45.5
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 3.5e-45 186.0 257 46.7
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 6.0e-45 185.3 252 46.8
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.0e-44 184.5 219 49.3
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.0e-44 184.5 219 49.3
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 6.6e-44 181.8 256 45.3
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 2.5e-43 179.9 259 42.9
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 4.3e-43 179.1 259 43.6
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 1.6e-42 177.2 255 45.5
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 2.1e-42 176.8 257 45.1
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 2.1e-42 176.8 255 42.0
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.8e-42 176.4 251 45.0
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 2.8e-42 176.4 221 47.1
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 2.8e-42 176.4 261 45.6
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 2.4e-41 173.3 252 43.3
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.0e-41 172.6 224 46.9
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 5.2e-41 172.2 302 42.7
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 6.8e-41 171.8 247 43.3
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 8.9e-41 171.4 224 46.0
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 1.2e-40 171.0 274 43.4
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 1.2e-40 171.0 250 46.4
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 2.0e-40 170.2 252 43.7
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 2.0e-40 170.2 252 46.0
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 4.4e-40 169.1 250 46.0
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 1.7e-39 167.2 226 44.7
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 2.9e-39 166.4 224 46.0
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 1.4e-38 164.1 260 43.1
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 1.4e-38 164.1 261 41.8
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 3.2e-38 162.9 260 43.1
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 4.2e-38 162.5 225 45.8
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 5.4e-38 162.2 260 42.7
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 7.1e-38 161.8 250 44.8
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 2.1e-37 160.2 254 44.1
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 3.5e-37 159.5 260 44.6
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 1.3e-36 157.5 252 44.0
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 1.3e-36 157.5 162 57.4
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 3.0e-36 156.4 255 42.0
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 3.3e-35 152.9 249 43.8
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 4.3e-35 152.5 259 41.3
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 1.8e-33 147.1 253 39.5
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 4.0e-33 146.0 252 42.5
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 9.0e-33 144.8 252 41.7
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 7.6e-32 141.7 267 37.8
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 9.9e-32 141.4 161 54.7
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.2e-31 140.2 211 42.2
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 6.4e-31 138.7 249 38.6
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 5.4e-30 135.6 267 40.1
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 1.6e-29 134.0 189 40.7
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 2.7e-29 133.3 141 53.2
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 7.9e-29 131.7 256 37.5
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.0e-28 131.3 195 42.1
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 2.3e-28 130.2 263 39.5
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 3.9e-28 129.4 256 35.2
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 5.6e-27 125.6 250 37.6
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 1.6e-26 124.0 255 38.0
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 8.1e-26 121.7 207 43.5
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 6.9e-25 118.6 202 40.1
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 2.0e-24 117.1 196 40.8
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 9.9e-24 114.8 254 36.2
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 2.2e-23 113.6 224 35.3
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 1.1e-22 111.3 129 49.6
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 3.2e-22 109.8 216 33.8
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 2.1e-21 107.1 121 54.5
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 6.0e-21 105.5 259 34.7
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 7.4e-19 98.6 178 37.6
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 2.4e-17 93.6 154 40.3
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 5.3e-17 92.4 146 41.1
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 1.2e-16 91.3 152 40.1
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.2e-14 82.8 94 46.8
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 7.1e-14 82.0 88 50.0
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 9.3e-14 81.6 100 47.0
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.6e-13 79.3 88 48.9
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 1.3e-12 77.8 194 31.4
arahy.Tifrunner.gnm1.ann1.PL6VNF Arachis hypogaea HOM05D004487 ORTHO05D005483 8.7e-12 75.1 94 43.6
ATR0730G218 Amborella trichopoda HOM05D004487 ORTHO05D005483 1.5e-11 74.3 103 43.7
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 4.3e-11 72.8 178 30.9
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 3.7e-10 69.7 50 62.0
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 4.8e-10 69.3 43 79.1
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 4.8e-10 69.3 43 79.1
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 1.8e-09 67.4 61 55.7
arahy.Tifrunner.gnm1.ann1.94164M Arachis hypogaea HOM05D004487 ORTHO05D005483 9.0e-09 65.1 65 52.3
arahy.Tifrunner.gnm1.ann1.FJ4QJG Arachis hypogaea HOM05D004487 ORTHO05D005483 1.5e-08 64.3 65 52.3
arahy.Tifrunner.gnm1.ann1.E9WDF1 Arachis hypogaea HOM05D004487 ORTHO05D005483 7.6e-08 62.0 117 37.6


User provided reference genes

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