Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 3.3e-217 758.1 382 100.0
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 9.1e-207 723.4 382 95.3
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 7.3e-196 687.2 382 90.3
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 2.5e-188 662.1 382 86.6
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 2.1e-150 536.2 379 69.1
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 8.7e-149 530.8 379 69.9
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 5.6e-148 528.1 380 69.5
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 9.6e-148 527.3 379 68.3
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 4.8e-147 525.0 380 67.6
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 1.1e-146 523.9 380 66.6
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 3.4e-145 518.8 380 67.1
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.0e-144 517.3 379 66.5
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 2.2e-144 516.2 380 66.8
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 4.9e-144 515.0 379 66.2
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 8.4e-144 514.2 380 66.6
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.9e-143 513.1 379 66.0
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 2.5e-143 512.7 380 66.1
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 5.5e-143 511.5 380 66.1
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 9.3e-143 510.8 379 65.7
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 2.7e-142 509.2 380 65.5
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 6.0e-142 508.1 380 65.0
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 7.9e-142 507.7 379 65.4
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 1.0e-141 507.3 380 65.3
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 2.3e-141 506.1 381 64.8
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 3.9e-141 505.4 380 65.8
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 5.1e-141 505.0 365 68.8
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 8.7e-141 504.2 380 65.3
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 1.1e-140 503.8 379 65.4
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 3.3e-140 502.3 380 64.5
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 4.3e-140 501.9 382 64.1
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 5.7e-140 501.5 389 63.8
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 7.4e-140 501.1 380 64.5
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 1.3e-139 500.4 380 65.0
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 1.6e-139 500.0 380 65.0
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 3.7e-139 498.8 376 64.9
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 3.7e-139 498.8 380 64.2
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 8.2e-139 497.7 380 64.5
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 8.2e-139 497.7 379 65.2
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 2.4e-138 496.1 379 63.1
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 9.0e-138 494.2 433 58.0
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 4.5e-137 491.9 380 64.5
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 7.6e-137 491.1 380 64.2
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 1.3e-136 490.3 380 64.5
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 2.2e-136 489.6 379 63.3
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 3.8e-136 488.8 379 63.1
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 5.0e-136 488.4 377 63.4
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 1.1e-135 487.3 376 64.9
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 1.9e-135 486.5 377 62.6
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 1.0e-133 480.7 379 60.9
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 2.3e-133 479.6 380 64.5
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 3.9e-133 478.8 380 59.5
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 1.1e-132 477.2 379 61.5
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 1.5e-132 476.9 380 59.5
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 4.3e-132 475.3 379 60.9
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 1.6e-131 473.4 379 60.4
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 3.7e-131 472.2 382 61.3
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 1.1e-130 470.7 379 60.9
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 6.9e-130 468.0 380 60.5
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 9.0e-130 467.6 380 61.1
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 1.2e-129 467.2 379 61.2
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 1.5e-129 466.8 380 62.1
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 3.4e-129 465.7 379 59.9
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 4.5e-129 465.3 379 60.9
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 5.9e-129 464.9 380 58.4
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 2.2e-128 463.0 382 59.2
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 9.4e-127 457.6 380 59.5
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 9.4e-127 457.6 381 58.3
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 1.6e-126 456.8 380 57.4
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 3.6e-126 455.7 380 57.4
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 7.9e-126 454.5 380 57.4
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 7.9e-126 454.5 380 57.4
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 1.0e-125 454.1 380 57.1
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 1.0e-125 454.1 369 62.9
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 1.0e-125 454.1 381 61.2
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 1.4e-125 453.8 380 58.4
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 3.0e-125 452.6 380 58.7
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 3.9e-125 452.2 380 57.6
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 6.7e-125 451.4 410 55.9
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 8.8e-125 451.1 380 57.9
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 7.4e-124 448.0 402 57.0
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 9.7e-124 447.6 381 57.0
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 1.3e-123 447.2 381 57.7
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 2.1e-118 429.9 379 58.3
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 4.7e-118 428.7 380 55.0
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 2.6e-116 422.9 428 52.1
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 9.7e-116 421.0 380 56.3
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 1.1e-114 417.5 379 56.2
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 5.9e-113 411.8 379 54.4
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 4.2e-111 405.6 376 53.7
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 7.2e-111 404.8 380 53.9
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 3.6e-110 402.5 386 54.7
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 8.0e-110 401.4 318 63.2
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 9.1e-98 361.3 375 48.0
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 8.5e-96 354.8 389 46.3
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 6.3e-91 338.6 267 60.7
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 5.4e-90 335.5 270 61.1
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 7.5e-84 315.1 279 57.3
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 2.1e-78 297.0 375 41.9
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 1.8e-77 293.9 408 42.6
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 3.3e-71 273.1 184 70.7
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 5.8e-68 262.3 378 36.2
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 3.7e-67 259.6 269 52.4
Aqoxy3G01225 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 5.1e-48 196.1 167 56.3
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 2.6e-44 183.7 219 45.2
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 2.6e-44 183.7 219 45.2
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 1.7e-43 181.0 138 65.9
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 4.2e-42 176.4 163 50.3
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 1.4e-37 161.4 139 56.1
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 3.1e-37 160.2 124 59.7
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 2.6e-36 157.1 121 61.2
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 3.4e-36 156.8 182 47.3
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 3.4e-28 130.2 146 53.4
HanXRQChr15g0481161 Helianthus annuus HOM05D005972 ORTHO05D007548 2.2e-27 127.5 116 53.4
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 6.5e-27 125.9 370 29.7
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 4.8e-22 109.8 107 57.9
CBR_g51824 Chara braunii HOM05D005972 ORTHO05D007548 1.5e-20 104.8 356 26.1
CSS0032497 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D007548 1.0e-16 92.0 121 43.8
Zm00001eb076720 Zea mays HOM05D005972 ORTHO05D007548 4.1e-13 80.1 115 42.6
CAN.G730.12 Capsicum annuum HOM05D005972 ORTHO05D007548 3.4e-12 77.0 51 74.5
COL.COLO4_10012 Corchorus olitorius HOM05D005972 ORTHO05D007548 3.4e-12 77.0 76 56.6
CAN.G730.21 Capsicum annuum HOM05D005972 ORTHO05D007548 4.5e-12 76.6 52 75.0
A05p16910 Brassica napus HOM05D005972 ORTHO05D007548 1.4e-10 71.6 67 53.7
CSS0030864 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 9.4e-10 68.9 75 52.0
CAN.G1940.2 Capsicum annuum HOM05D005972 ORTHO05D007548 5.1e-08 63.2 48 62.5
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 6.7e-08 62.8 50 68.0
COL.COLO4_29892 Corchorus olitorius HOM05D005972 ORTHO05D007548 8.8e-08 62.4 53 60.4
arahy.Tifrunner.gnm1.ann1.YJH68W Arachis hypogaea HOM05D005972 ORTHO05D083016 2.5e-07 60.8 53 58.5
arahy.Tifrunner.gnm1.ann1.03MD5J Arachis hypogaea HOM05D000575 ORTHO05D011349 1.7e-06 58.2 47 61.7
Ca_20384_v3 Cicer arietinum L. HOM05D001142 ORTHO05D004628 3.7e-06 57.0 283 24.7
Potri.010G121500 Populus trichocarpa HOM05D001367 ORTHO05D002514 8.2e-06 55.8 289 23.5


User provided reference genes

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