Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 0.0e+00 1485.7 773 100.0
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 0.0e+00 1166.8 830 76.6
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 0.0e+00 1120.9 879 73.4
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 2.4e-307 1058.5 826 71.8
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 2.1e-303 1045.4 827 70.7
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.5e-296 1021.9 633 88.3
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.5e-296 1021.9 633 88.3
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 4.0e-201 705.7 448 86.8
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 3.6e-178 629.4 792 48.1
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 6.9e-177 625.2 759 50.2
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 2.6e-176 623.2 786 49.0
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 2.4e-174 616.7 888 44.0
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 9.0e-169 598.2 664 52.4
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 1.5e-168 597.4 664 52.4
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 5.8e-168 595.5 724 48.5
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 5.4e-166 589.0 847 44.4
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 5.1e-164 582.4 663 49.9
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 6.7e-164 582.0 827 45.3
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 8.7e-164 581.6 775 46.2
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.5e-163 580.1 775 46.2
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 1.6e-162 577.4 774 46.1
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 1.8e-161 573.9 726 46.4
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 9.0e-161 571.6 661 49.9
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.5e-160 570.9 839 44.0
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 1.5e-160 570.9 863 44.4
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 1.7e-159 567.4 879 41.6
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 6.4e-159 565.5 666 49.8
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 1.1e-158 564.7 734 46.6
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 3.2e-158 563.1 859 43.3
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 5.5e-158 562.4 715 46.9
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 3.5e-157 559.7 736 46.9
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 6.0e-157 558.9 822 43.8
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 7.9e-157 558.5 841 42.9
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 1.0e-156 558.1 736 46.5
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 3.0e-156 556.6 741 45.6
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 6.7e-156 555.4 894 41.6
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.1e-155 554.7 862 42.2
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 1.9e-155 553.9 796 44.3
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 7.4e-155 552.0 768 45.8
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 3.1e-153 546.6 665 48.3
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 9.0e-153 545.0 780 44.5
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.2e-152 544.7 810 42.6
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 1.5e-152 544.3 778 44.0
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 3.4e-152 543.1 687 47.9
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 1.3e-151 541.2 863 41.7
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 2.2e-151 540.4 843 41.5
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.1e-150 538.1 888 40.8
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 5.5e-150 535.8 842 41.7
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 1.2e-149 534.6 751 44.5
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 2.1e-149 533.9 879 41.0
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 1.0e-148 531.6 723 45.8
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 1.3e-148 531.2 651 48.4
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 9.7e-147 525.0 879 41.1
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 2.8e-146 523.5 660 47.0
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 5.9e-144 515.8 812 41.4
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 2.9e-143 513.5 757 43.5
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 3.8e-143 513.1 652 46.6
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 8.5e-143 511.9 680 45.9
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 1.1e-142 511.5 694 46.5
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 2.5e-142 510.4 883 40.7
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 4.2e-142 509.6 901 38.5
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 5.5e-142 509.2 859 40.4
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 9.4e-142 508.4 848 39.9
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 1.0e-140 505.0 846 39.0
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 1.0e-140 505.0 817 40.5
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 1.4e-140 504.6 764 42.3
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 1.8e-140 504.2 814 40.3
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 2.3e-140 503.8 739 41.9
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 3.9e-140 503.1 669 44.7
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 3.9e-140 503.1 862 40.4
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 4.3e-139 499.6 758 43.4
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 2.2e-138 497.3 827 41.2
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 2.8e-138 496.9 631 46.9
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 4.8e-138 496.1 587 48.2
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 1.8e-137 494.2 698 44.1
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 6.9e-137 492.3 674 44.4
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 2.0e-136 490.7 662 44.0
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 1.7e-135 487.6 740 41.6
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 1.7e-135 487.6 664 44.4
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 3.8e-135 486.5 674 43.6
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 3.8e-135 486.5 840 38.5
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 1.1e-134 485.0 737 41.0
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 1.1e-134 485.0 780 40.0
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 5.5e-134 482.6 737 40.8
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 9.4e-134 481.9 737 40.7
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 3.6e-133 479.9 673 43.8
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 1.0e-132 478.4 673 43.5
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 3.0e-132 476.9 780 40.5
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 3.9e-132 476.5 849 40.6
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 8.8e-132 475.3 708 42.2
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 1.1e-131 474.9 716 42.0
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 2.2e-130 470.7 939 37.4
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 2.2e-130 470.7 747 40.2
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 6.3e-130 469.2 671 42.8
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 1.8e-129 467.6 834 39.0
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 5.0e-127 459.5 722 40.9
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 1.1e-126 458.4 786 39.9
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 1.4e-126 458.0 659 42.5
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 1.6e-125 454.5 774 39.4
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 1.6e-125 454.5 668 43.7
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.0e-124 451.8 542 46.9
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 3.3e-123 446.8 887 36.4
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 7.2e-118 429.1 670 41.0
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 3.6e-117 426.8 810 37.5
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 1.2e-115 421.8 615 42.6
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 5.3e-113 412.9 642 41.6
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 5.2e-108 396.4 825 35.5
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 2.0e-104 384.4 519 45.3
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 2.0e-104 384.4 638 39.5
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 6.6e-95 352.8 675 36.1
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 9.5e-94 349.0 723 35.0
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 4.7e-93 346.7 723 34.9
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 9.8e-91 339.0 765 35.4
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 5.4e-89 333.2 356 50.6
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 9.2e-89 332.4 699 34.6
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.6e-88 331.6 486 43.6
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.6e-88 331.6 224 81.2
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 4.7e-85 320.1 656 37.8
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 6.2e-85 319.7 456 44.1
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.2e-82 311.2 185 91.4
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 1.2e-80 305.4 765 33.2
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 7.3e-78 296.2 572 39.7
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 1.2e-77 295.4 714 31.1
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 8.1e-77 292.7 157 93.0
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 8.9e-76 289.3 670 33.3
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 8.9e-76 289.3 670 33.3
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.2e-75 288.9 403 44.9
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 2.0e-75 288.1 448 42.0
CsaV3_5G035490 Cucumis sativus L. HOM05D003594 ORTHO05D004268 9.9e-75 285.8 168 91.1
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 6.2e-69 266.5 280 49.6
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 5.1e-63 246.9 332 44.9
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 1.1e-60 239.2 248 51.6
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 7.1e-57 226.5 778 28.4
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 1.0e-55 222.6 535 32.1
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 4.6e-48 197.2 310 41.3
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.2e-42 178.3 484 30.8
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 4.2e-41 174.1 507 31.2
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 5.5e-41 173.7 498 29.1
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 1.6e-37 162.2 147 57.1
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 4.8e-37 160.6 196 46.9
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 2.9e-34 151.4 119 58.8
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 2.9e-34 151.4 296 32.8
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 8.4e-34 149.8 208 46.2
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 1.1e-33 149.4 136 60.3
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 4.2e-33 147.5 184 42.9
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 3.5e-32 144.4 125 58.4
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 8.7e-31 139.8 328 35.4
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 7.4e-30 136.7 129 54.3
Hma1.2p1_2419F.1_g321820 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 9.7e-30 136.3 123 57.7
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 5.3e-28 130.6 301 34.9
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 4.5e-27 127.5 125 53.6
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 5.9e-27 127.1 138 50.7
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 7.7e-27 126.7 306 36.3
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.9e-25 122.1 115 59.1
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 4.6e-24 117.5 138 46.4
C02p37120 Brassica napus HOM05D003594 ORTHO05D004268 2.3e-23 115.2 123 48.8
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 2.3e-23 115.2 219 39.7
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 5.1e-23 114.0 257 35.4
A02p30260 Brassica napus HOM05D003594 ORTHO05D004268 1.5e-22 112.5 106 51.9
A03p57890 Brassica napus HOM05D003594 ORTHO05D004268 1.5e-22 112.5 106 51.9
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 2.0e-22 112.1 212 35.4
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 5.7e-22 110.5 212 38.2
Haze_25332 Corylus avellana HOM05D003594 ORTHO05D004268 4.5e-19 100.9 90 60.0
Haze_02499 Corylus avellana HOM05D003594 ORTHO05D004268 5.0e-18 97.4 90 58.9
C03p91380 Brassica napus HOM05D003594 ORTHO05D004268 4.2e-17 94.4 82 52.4
BolC3t21454H Brassica oleracea HOM05D003594 ORTHO05D004268 4.2e-17 94.4 82 52.4
BolC5t29265H Brassica oleracea HOM05D003594 ORTHO05D004268 4.2e-17 94.4 82 52.4
AagrBONN_evm.TU.Sc2ySwM_228.2672 Anthoceros agrestis HOM05D003594 ORTHO05D004268 1.8e-15 89.0 127 40.9
BolC7t45516H Brassica oleracea HOM05D003594 ORTHO05D004268 3.9e-15 87.8 82 50.0
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 5.1e-15 87.4 295 29.5
CAN.G645.4 Capsicum annuum HOM05D003594 ORTHO05D004268 1.1e-14 86.3 82 54.9
C03p15410 Brassica napus HOM05D003594 ORTHO05D004268 2.8e-13 81.6 88 43.2
CDE02G4417 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 3.7e-13 81.3 235 31.5
C03p54150 Brassica napus HOM05D003594 ORTHO05D004268 2.0e-11 75.5 72 50.0
BraA03t14853Z Brassica rapa HOM05D003594 ORTHO05D004268 2.0e-11 75.5 72 50.0
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 2.6e-11 75.1 88 46.6
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 7.7e-11 73.6 109 42.2
SHI24305 Sapria himalayana HOM05D000023 ORTHO05D000014 8.8e-07 60.1 56 50.0
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 5.7e-06 57.4 69 46.4


User provided reference genes

Program Settings