Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012336.2 Cucumis melo HOM05D007060 ORTHO05D009087 1.5e-291 1005.4 483 100.0
CsaV3_5G035220 Cucumis sativus L. HOM05D007060 ORTHO05D009087 9.9e-275 949.5 483 94.6
ClCG05G021920 Citrullus lanatus HOM05D007060 ORTHO05D009087 7.9e-248 860.1 480 86.2
Sed0007060 Sechium edule HOM05D007060 ORTHO05D009087 1.0e-210 736.9 480 74.0
MD03G1165900 Malus domestica HOM05D007060 ORTHO05D009087 8.0e-192 674.1 496 66.1
CiPaw.13G043400 Carya illinoinensis HOM05D007060 ORTHO05D009087 2.3e-191 672.5 492 65.2
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 6.8e-191 671.0 499 65.7
Prupe.4G266300 Prunus persica HOM05D007060 ORTHO05D009087 2.2e-189 666.0 488 65.6
CANSAT56G2168 Cannabis sativa HOM05D007060 ORTHO05D009087 1.1e-185 653.7 498 63.9
Lj5g0018387 Lotus japonicus HOM05D007060 ORTHO05D009087 1.9e-185 652.9 478 66.7
Manes.07G085000 Manihot esculenta HOM05D007060 ORTHO05D009087 8.1e-184 647.5 499 65.1
Medtr1g090540 Medicago truncatula HOM05D007060 ORTHO05D009087 2.0e-182 642.9 481 65.5
QL04p047886 Quercus lobata HOM05D007060 ORTHO05D009087 5.8e-182 641.3 402 72.9
Duzib106G1772 Durio zibethinus HOM05D007060 ORTHO05D009087 9.9e-182 640.6 470 64.9
Gorai.N007800 Gossypium raimondii HOM05D007060 ORTHO05D009087 3.7e-181 638.6 473 67.0
Psat6g172000 Pisum sativum HOM05D007060 ORTHO05D009087 1.9e-180 636.3 483 65.4
Cc02_g09400 Coffea canephora HOM05D007060 ORTHO05D009087 2.4e-180 636.0 486 63.8
TPR.G37861 Trifolium pratense HOM05D007060 ORTHO05D009087 2.4e-180 636.0 476 65.8
TAR623G0941 Trochodendron aralioides HOM05D007060 ORTHO05D009087 2.4e-180 636.0 501 61.1
Glyma.10G195800 Glycine max HOM05D007060 ORTHO05D009087 3.2e-180 635.6 478 64.2
CSS0037937 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 7.1e-180 634.4 501 61.9
TWI63G0697 Tripterygium wilfordii HOM05D007060 ORTHO05D009087 7.1e-180 634.4 474 63.7
Solyc11g006560.3 Solanum lycopersicum HOM05D007060 ORTHO05D009087 1.6e-179 633.3 491 62.3
RcHm_v2.0_Chr1g0331951 Rosa chinensis HOM05D007060 ORTHO05D009087 2.1e-179 632.9 499 60.7
CSS0040194 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.5e-179 632.1 501 61.7
CSS0035496 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 6.0e-179 631.3 501 61.5
VMungo0720G1293 Vigna mungo HOM05D007060 ORTHO05D009087 7.8e-179 630.9 494 63.6
CSS0040116 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.0e-178 629.0 501 61.3
CSS0031015 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 5.1e-178 628.2 501 61.3
THA.LOC104816472 Tarenaya hassleriana HOM05D007060 ORTHO05D009087 6.6e-178 627.9 487 64.7
CSS0005765 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 8.6e-178 627.5 501 61.5
Potri.008G018200 Populus trichocarpa HOM05D007060 ORTHO05D009087 1.1e-177 627.1 484 64.0
CSS0037157 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.9e-177 626.3 498 62.0
CSS0035234 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.5e-177 625.9 501 61.3
CSS0046160 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.3e-177 625.5 498 61.8
AL3G22100 Arabidopsis lyrata HOM05D007060 ORTHO05D009087 5.6e-177 624.8 494 62.3
CSS0002387 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 5.6e-177 624.8 498 61.8
Thecc.10G116400 Theobroma cacao HOM05D007060 ORTHO05D009087 9.5e-177 624.0 474 63.1
CSS0014623 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.7e-176 621.7 498 61.4
PGR142G1122 Punica granatum HOM05D007060 ORTHO05D009087 1.4e-175 620.2 502 60.2
CSS0019796 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.8e-175 619.8 498 61.2
Atru.chr12.1066 Acer truncatum HOM05D007060 ORTHO05D009087 4.0e-175 618.6 403 69.0
AT3G10630 Arabidopsis thaliana HOM05D007060 ORTHO05D009087 4.0e-175 618.6 494 60.7
CSS0028923 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 8.9e-175 617.5 498 61.2
Carub.0003s0986 Capsella rubella HOM05D007060 ORTHO05D009087 4.4e-174 615.1 490 61.4
CARHR085210 Cardamine hirsuta HOM05D007060 ORTHO05D009087 7.6e-174 614.4 473 62.8
Nn6g34700 Nelumbo nucifera HOM05D007060 ORTHO05D009087 7.6e-174 614.4 472 63.6
Sp3g08940 Schrenkiella parvula HOM05D007060 ORTHO05D009087 9.9e-174 614.0 494 60.9
Cpa.g.sc54.25 Carica papaya HOM05D007060 ORTHO05D009087 1.3e-173 613.6 400 70.0
GSVIVG01034635001 Vitis vinifera HOM05D007060 ORTHO05D009087 1.3e-173 613.6 403 69.5
BolC1t05373H Brassica oleracea HOM05D007060 ORTHO05D009087 2.2e-173 612.8 484 62.0
PGSC0003DMG400001998 Solanum tuberosum HOM05D007060 ORTHO05D009087 3.8e-173 612.1 487 61.8
Aqoxy1G00669 Aquilegia oxysepala HOM05D007060 ORTHO05D009087 1.1e-172 610.5 433 67.2
A01p41570 Brassica napus HOM05D007060 ORTHO05D009087 3.2e-172 609.0 486 61.9
Oeu033276.1 Olea europaea HOM05D007060 ORTHO05D009087 5.4e-172 608.2 411 69.3
Sopen11g002500 Solanum pennellii HOM05D007060 ORTHO05D009087 1.6e-171 606.7 413 67.3
BraA01t04232Z Brassica rapa HOM05D007060 ORTHO05D009087 4.6e-171 605.1 485 61.0
Phvul.007G138500 Phaseolus vulgaris HOM05D007060 ORTHO05D009087 7.8e-171 604.4 399 70.9
Thhalv10020598m.g Eutrema salsugineum HOM05D007060 ORTHO05D009087 1.7e-170 603.2 494 60.7
Sabra08G0011800 Salix brachista HOM05D007060 ORTHO05D009087 1.7e-170 603.2 399 70.2
Ciclev10015484m.g Citrus clementina HOM05D007060 ORTHO05D009087 1.1e-169 600.5 404 69.6
Hma1.2p1_0457F.1_g156870 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 1.5e-169 600.1 399 69.4
Ca_10429_v3 Cicer arietinum L. HOM05D007060 ORTHO05D009087 4.3e-169 598.6 392 71.4
CAN.G143.24 Capsicum annuum HOM05D007060 ORTHO05D009087 9.6e-169 597.4 406 69.0
Lj3P923T49 Lonicera japonica HOM05D007060 ORTHO05D009087 6.2e-168 594.7 400 68.0
MSTRG.9036 Avicennia marina HOM05D007060 ORTHO05D009087 5.2e-167 591.7 502 58.2
Migut.F00850 Erythranthe guttata HOM05D007060 ORTHO05D009087 9.0e-167 590.9 479 59.5
COL.COLO4_07825 Corchorus olitorius HOM05D007060 ORTHO05D009087 3.4e-166 589.0 404 67.6
PGR142G0278 Punica granatum HOM05D007060 ORTHO05D009087 5.8e-166 588.2 498 59.2
HanXRQChr02g0053541 Helianthus annuus HOM05D007060 ORTHO05D009087 9.9e-166 587.4 471 61.6
Peaxi162Scf00725g00056 Petunia axillaris HOM05D007060 ORTHO05D010136 1.3e-165 587.0 408 68.6
Nitab4.5_0001781g0140 Nicotiana tabacum HOM05D007060 ORTHO05D009087 1.7e-165 586.6 402 68.7
Dinv08415 Davidia involucrata HOM05D007060 ORTHO05D009087 3.2e-164 582.4 372 70.2
Nitab4.5_0007799g0060 Nicotiana tabacum HOM05D007060 ORTHO05D009087 3.2e-164 582.4 403 67.5
Gohir.D06G177400 Gossypium hirsutum HOM05D007060 ORTHO05D009087 3.5e-163 578.9 373 71.8
DCAR_005120 Daucus carota HOM05D007060 ORTHO05D009087 2.8e-160 569.3 369 70.7
unitig_46.g18644 Utricularia gibba HOM05D007060 ORTHO05D009087 1.1e-159 567.4 464 58.8
Lsat_1_v5_gn_2_105821 Lactuca sativa HOM05D007060 ORTHO05D009087 3.2e-156 555.8 404 63.9
Rhsim03G0096200 Rhododendron simsii HOM05D007060 ORTHO05D009087 5.4e-156 555.1 403 65.3
Sopen11g002460 Solanum pennellii HOM05D007060 ORTHO05D009087 1.3e-154 550.4 376 66.5
ECA238G3502 Erigeron canadensis HOM05D007060 ORTHO05D009087 2.3e-154 549.7 403 63.3
SalBow1G5690 Salvia bowleyana HOM05D007060 ORTHO05D009087 5.1e-154 548.5 456 59.4
Sopen11g002480 Solanum pennellii HOM05D007060 ORTHO05D009087 2.5e-153 546.2 360 68.1
CDE06G1445 Ceratophyllum demersum HOM05D007060 ORTHO05D009087 6.9e-151 538.1 391 65.5
ATR0772G206 Amborella trichopoda HOM05D007060 ORTHO05D009087 2.2e-149 533.1 485 54.4
SEGI_33772 Sequoiadendron giganteum HOM05D007060 ORTHO05D009087 2.9e-149 532.7 453 58.9
Actinidia03837 Actinidia chinensis HOM05D007060 ORTHO05D009087 4.6e-147 525.4 348 71.0
BcaB04g21186 Brassica carinata HOM05D007060 ORTHO05D009087 7.9e-147 524.6 475 57.1
Os09g0296700 Oryza sativa ssp. japonica HOM05D007060 ORTHO05D009087 7.9e-147 524.6 416 59.6
Eucgr.G02680 Eucalyptus grandis HOM05D007060 ORTHO05D009087 3.7e-144 515.8 350 68.0
Zm00001eb309100 Zea mays HOM05D007060 ORTHO05D009087 3.4e-142 509.2 485 52.8
SMO203G0203 Selaginella moellendorffii HOM05D007060 ORTHO05D009087 1.8e-130 470.3 396 55.8
Lalb_Chr21g0312821 Lupinus albus HOM05D007060 ORTHO05D009087 1.3e-125 454.1 296 72.3
AagrBONN_evm.TU.Sc2ySwM_344.3615 Anthoceros agrestis HOM05D007060 ORTHO05D009087 1.4e-124 450.7 388 57.2
SHI22512 Sapria himalayana HOM05D007060 ORTHO05D009087 1.4e-116 424.1 355 59.4
Glyma.20G194300 Glycine max HOM05D007060 ORTHO05D009087 3.2e-116 422.9 460 51.5
Pp3c6_17860 Physcomitrium patens HOM05D007060 ORTHO05D009087 1.5e-97 360.9 404 47.3
CBR_g29369 Chara braunii HOM05D007060 ORTHO05D009087 9.8e-97 358.2 296 59.8
MCO11G427 Micromonas commoda HOM05D007060 ORTHO05D009087 1.8e-87 327.4 441 43.3
Hma1.2p1_0826F.1_g224930 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 1.1e-84 318.2 206 71.8
Cre02.g118801 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 1.9e-79 300.8 450 40.0
PRCOL_00001658 Prasinoderma coloniale HOM05D007060 ORTHO05D009087 8.6e-69 265.4 450 37.6
FAN24G3568 Fragaria x ananassa HOM05D007060 ORTHO05D009087 2.4e-63 247.3 402 38.1
FvH4_5g28400 Fragaria vesca HOM05D007060 ORTHO05D009087 9.2e-63 245.4 164 66.5
TAR625G0310 Trochodendron aralioides HOM05D007060 ORTHO05D009087 1.3e-61 241.5 304 42.8
HPP92_006362 Vanilla planifolia HOM05D007060 ORTHO05D009087 2.1e-43 181.0 182 51.1
Cre09.g386732 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 8.4e-40 169.1 377 30.8
FAN03G2415 Fragaria x ananassa HOM05D007060 ORTHO05D009087 7.4e-28 129.4 93 67.7
PRCOL_00006151 Prasinoderma coloniale HOM05D007060 ORTHO05D048979 6.2e-27 126.3 322 30.4
MCO05G161 Micromonas commoda HOM05D007060 ORTHO05D048979 3.7e-19 100.5 283 28.3
MBI01_g04536_MAGBIO Magnolia biondii HOM05D007060 ORTHO05D009087 4.2e-15 87.0 67 64.2
AL1G24060 Arabidopsis lyrata HOM05D007060 ORTHO05D023607 3.9e-13 80.5 59 59.3
CBR_g29367 Chara braunii HOM05D007060 ORTHO05D009087 2.4e-10 71.2 83 49.4


User provided reference genes

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