Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012309.2 Cucumis melo HOM05D006789 ORTHO05D008460 6.4e-106 387.5 204 100.0
CsaV3_5G034990 Cucumis sativus L. HOM05D006789 ORTHO05D008460 8.6e-103 377.1 204 97.5
ClCG05G022140 Citrullus lanatus HOM05D006789 ORTHO05D008460 1.7e-95 352.8 210 90.0
Sed0016797 Sechium edule HOM05D006789 ORTHO05D008460 1.3e-87 326.6 207 85.5
Sed0010043 Sechium edule HOM05D006789 ORTHO05D008460 3.3e-78 295.4 204 80.4
Atru.chr3.2036 Acer truncatum HOM05D006789 ORTHO05D008460 2.6e-75 285.8 205 73.2
TWI38G1707 Tripterygium wilfordii HOM05D006789 ORTHO05D008460 2.9e-74 282.3 212 71.7
Ciclev10029282m.g Citrus clementina HOM05D006789 ORTHO05D008460 3.8e-74 282.0 207 72.0
arahy.Tifrunner.gnm1.ann1.KMQ9TB Arachis hypogaea HOM05D006789 ORTHO05D008460 1.4e-73 280.0 201 72.6
Hma1.2p1_0892F.1_g233210 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 1.4e-73 280.0 201 73.1
arahy.Tifrunner.gnm1.ann1.G6AZCI Arachis hypogaea HOM05D006789 ORTHO05D008460 1.9e-73 279.6 201 72.6
Dinv24597 Davidia involucrata HOM05D006789 ORTHO05D008460 4.2e-73 278.5 201 73.1
Duzib106G0468 Durio zibethinus HOM05D006789 ORTHO05D008460 7.1e-73 277.7 206 71.8
CANSAT56G4131 Cannabis sativa HOM05D006789 ORTHO05D008460 3.5e-72 275.4 213 69.5
Potri.008G012100 Populus trichocarpa HOM05D006789 ORTHO05D008460 4.6e-72 275.0 206 70.9
Lalb_Chr15g0079361 Lupinus albus HOM05D006789 ORTHO05D008460 1.3e-71 273.5 201 71.1
CiPaw.14G037500 Carya illinoinensis HOM05D006789 ORTHO05D008460 1.7e-71 273.1 204 73.0
Gorai.N006500 Gossypium raimondii HOM05D006789 ORTHO05D008460 2.3e-71 272.7 208 69.2
Gohir.A06G170900 Gossypium hirsutum HOM05D006789 ORTHO05D008460 3.9e-71 271.9 208 69.2
PGR044G1098 Punica granatum HOM05D006789 ORTHO05D008460 5.1e-71 271.6 208 67.8
Thecc.10G129500 Theobroma cacao HOM05D006789 ORTHO05D008460 1.5e-70 270.0 216 68.1
Gohir.D06G178700 Gossypium hirsutum HOM05D006789 ORTHO05D008460 1.9e-70 269.6 208 68.3
Glyma.06G315000 Glycine max HOM05D006789 ORTHO05D008460 4.3e-70 268.5 201 71.1
TAR633G0905 Trochodendron aralioides HOM05D006789 ORTHO05D008460 9.6e-70 267.3 207 68.6
GSVIVG01027313001 Vitis vinifera HOM05D006789 ORTHO05D008460 1.3e-69 266.9 188 72.3
VMungo0647G0732 Vigna mungo HOM05D006789 ORTHO05D008460 2.8e-69 265.8 199 71.4
Lj3g0008710 Lotus japonicus HOM05D006789 ORTHO05D008460 3.6e-69 265.4 199 70.4
Prupe.2G061000 Prunus persica HOM05D006789 ORTHO05D008460 8.1e-69 264.2 212 68.9
Medtr3g006790 Medicago truncatula HOM05D006789 ORTHO05D008460 1.1e-68 263.8 199 69.3
Sabra08G0007400 Salix brachista HOM05D006789 ORTHO05D008460 1.8e-68 263.1 208 68.3
Manes.10G064901 Manihot esculenta HOM05D006789 ORTHO05D008460 2.4e-68 262.7 207 68.6
Haze_03403 Corylus avellana HOM05D006789 ORTHO05D008460 4.0e-68 261.9 233 63.1
TPR.G25521 Trifolium pratense HOM05D006789 ORTHO05D008460 1.2e-67 260.4 199 69.3
Glyma.04G129000 Glycine max HOM05D006789 ORTHO05D008460 1.5e-67 260.0 199 69.8
MD02G1265000 Malus domestica HOM05D006789 ORTHO05D008460 4.4e-67 258.5 212 65.1
Phvul.008G161900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 7.6e-67 257.7 200 68.5
MBI19_g19122_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 9.9e-67 257.3 200 69.5
Rhsim07G0072100 Rhododendron simsii HOM05D006789 ORTHO05D008460 9.9e-67 257.3 219 65.3
vmacro13786 Vaccinium macrocarpon HOM05D006789 ORTHO05D008460 2.9e-66 255.8 228 63.6
EL10Ac4g08777 Beta vulgaris HOM05D006789 ORTHO05D008460 3.8e-66 255.4 207 66.2
Lsat_1_v5_gn_2_28141 Lactuca sativa HOM05D006789 ORTHO05D008460 3.8e-66 255.4 202 68.3
Hund00694 Selenicereus undatus HOM05D006789 ORTHO05D008460 3.8e-66 255.4 221 64.3
Peaxi162Scf00217g00626 Petunia axillaris HOM05D006789 ORTHO05D008460 8.4e-66 254.2 204 66.2
HanXRQChr06g0181521 Helianthus annuus HOM05D006789 ORTHO05D008460 1.1e-65 253.8 205 68.3
DCAR_006626 Daucus carota HOM05D006789 ORTHO05D008460 5.4e-65 251.5 206 64.1
Eucgr.J00312 Eucalyptus grandis HOM05D006789 ORTHO05D008460 7.1e-65 251.1 200 66.0
AL6G14600 Arabidopsis lyrata HOM05D006789 ORTHO05D008460 6.0e-64 248.1 217 62.2
AT5G04910 Arabidopsis thaliana HOM05D006789 ORTHO05D008460 6.0e-64 248.1 217 61.3
SGA_v2.0_scaffold196G40989 Striga asiatica HOM05D006789 ORTHO05D008460 6.0e-64 248.1 197 66.5
Carub.0006s0385 Capsella rubella HOM05D006789 ORTHO05D008460 7.9e-64 247.7 210 63.3
BraA10t45166Z Brassica rapa HOM05D006789 ORTHO05D008460 1.3e-63 246.9 211 63.0
BcaC06g32200 Brassica carinata HOM05D006789 ORTHO05D008460 3.9e-63 245.4 210 61.0
THA.LOC104826955 Tarenaya hassleriana HOM05D006789 ORTHO05D008460 5.1e-63 245.0 214 60.7
MSTRG.5084 Avicennia marina HOM05D006789 ORTHO05D008460 6.6e-63 244.6 217 62.2
A10p31220 Brassica napus HOM05D006789 ORTHO05D008460 1.1e-62 243.8 211 62.6
Sp6g37890 Schrenkiella parvula HOM05D006789 ORTHO05D008460 1.1e-62 243.8 211 62.1
Oeu013184.1 Olea europaea HOM05D006789 ORTHO05D008460 1.5e-62 243.4 213 63.4
SalBow4G0168 Salvia bowleyana HOM05D006789 ORTHO05D008460 1.9e-62 243.0 222 60.8
BolC9t59933H Brassica oleracea HOM05D006789 ORTHO05D008460 2.5e-62 242.7 211 62.6
Thhalv10014633m.g Eutrema salsugineum HOM05D006789 ORTHO05D008460 2.5e-62 242.7 213 61.0
Solyc10g039380.2 Solanum lycopersicum HOM05D006789 ORTHO05D008460 2.5e-62 242.7 202 65.3
Sc22g0002280 Simmondsia chinensis HOM05D006789 ORTHO05D001455 3.3e-62 242.3 200 67.5
Sopen10g012840 Solanum pennellii HOM05D006789 ORTHO05D008460 3.3e-62 242.3 202 65.3
SGA_v2.0_scaffold196G40996 Striga asiatica HOM05D006789 ORTHO05D008460 5.6e-62 241.5 197 65.0
FvH4_7g05010 Fragaria vesca HOM05D006789 ORTHO05D008460 7.4e-62 241.1 205 63.4
Nn2g14746 Nelumbo nucifera HOM05D006789 ORTHO05D008460 1.3e-61 240.4 182 68.1
C09p71840 Brassica napus HOM05D006789 ORTHO05D008460 2.1e-61 239.6 211 61.6
FAN06G2149 Fragaria x ananassa HOM05D006789 ORTHO05D008460 6.2e-61 238.0 211 61.6
RcHm_v2.0_Chr1g0331321 Rosa chinensis HOM05D006789 ORTHO05D008460 6.2e-61 238.0 216 59.7
ECA238G4254 Erigeron canadensis HOM05D006789 ORTHO05D008460 1.4e-60 236.9 206 65.0
Aqoxy1G00021 Aquilegia oxysepala HOM05D006789 ORTHO05D008460 2.4e-60 236.1 176 68.2
PSO339G2606 Papaver somniferum HOM05D006789 ORTHO05D008460 1.2e-59 233.8 204 62.3
COL.COLO4_28906 Corchorus olitorius HOM05D006789 ORTHO05D008460 7.6e-59 231.1 156 75.0
PSO384G0303 Papaver somniferum HOM05D006789 ORTHO05D008460 1.3e-58 230.3 205 61.5
CSS0000309 Camellia sinensis var. sinensis HOM05D006789 ORTHO05D008460 4.9e-58 228.4 282 50.7
Gorai.010G208300 Gossypium raimondii HOM05D006789 ORTHO05D008460 8.4e-58 227.6 156 73.7
Gorai.N006000 Gossypium raimondii HOM05D006789 ORTHO05D008460 3.2e-57 225.7 156 73.1
Actinidia19614 Actinidia chinensis HOM05D000583 ORTHO05D000442 7.1e-57 224.6 168 72.0
CDE08G0307 Ceratophyllum demersum HOM05D006789 ORTHO05D008460 9.3e-57 224.2 191 62.3
Os01g0265700 Oryza sativa ssp. japonica HOM05D006789 ORTHO05D008460 1.2e-56 223.8 182 62.6
Aa31LG11G5790 Aethionema arabicum HOM05D006789 ORTHO05D008460 1.6e-56 223.4 218 57.3
Hma1.2p1_0892F.1_g233220 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 7.9e-56 221.1 150 76.7
Zm00001eb128210 Zea mays HOM05D006789 ORTHO05D008460 1.0e-55 220.7 217 56.7
Cc02_g32010 Coffea canephora HOM05D006789 ORTHO05D008460 1.8e-55 219.9 158 72.2
Nitab4.5_0004033g0070 Nicotiana tabacum HOM05D006789 ORTHO05D008460 3.9e-55 218.8 155 72.9
FAN03G1759 Fragaria x ananassa HOM05D006789 ORTHO05D008460 1.1e-54 217.2 209 59.3
Gohir.A06G170906 Gossypium hirsutum HOM05D006789 ORTHO05D008460 2.5e-54 216.1 157 70.7
Migut.N01877 Erythranthe guttata HOM05D006789 ORTHO05D008460 5.6e-54 214.9 211 59.2
Nitab4.5_0002156g0010 Nicotiana tabacum HOM05D006789 ORTHO05D008460 4.8e-53 211.8 155 71.0
ATR0068G087 Amborella trichopoda HOM05D006789 ORTHO05D008460 1.8e-52 209.9 148 70.9
Lj7C491T7 Lonicera japonica HOM05D006789 ORTHO05D008460 6.9e-52 208.0 152 73.0
Gohir.D06G178832 Gossypium hirsutum HOM05D006789 ORTHO05D008460 2.0e-51 206.5 146 70.5
Carub.0010s0003 Capsella rubella HOM05D006789 ORTHO05D008460 4.2e-49 198.7 163 63.2
FAN01G0280 Fragaria x ananassa HOM05D006789 ORTHO05D008460 7.1e-49 198.0 204 56.4
SEGI_32817 Sequoiadendron giganteum HOM05D006789 ORTHO05D008460 2.1e-48 196.4 157 63.1
unitig_26.g9495 Utricularia gibba HOM05D006789 ORTHO05D008460 4.6e-48 195.3 176 57.4
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 6.0e-48 194.9 148 68.9
AUR62014306 Chenopodium quinoa HOM05D006789 ORTHO05D008460 1.3e-42 177.2 183 56.3
MBI05_g14944_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 2.9e-42 176.0 161 60.2
Psat5g230200 Pisum sativum HOM05D006789 ORTHO05D008460 1.4e-41 173.7 119 75.6
Actinidia29655 Actinidia chinensis HOM05D006789 ORTHO05D008460 8.7e-39 164.5 197 51.3
Pp3c10_8520 Physcomitrium patens HOM05D006789 ORTHO05D008460 4.3e-38 162.2 170 52.4
CARHR208350 Cardamine hirsuta HOM05D006789 ORTHO05D008460 5.1e-31 138.7 87 74.7
Cfa010449 Carpinus fangiana HOM05D006789 ORTHO05D008460 6.7e-31 138.3 117 63.2
Mapoly0023s0087 Marchantia polymorpha HOM05D006789 ORTHO05D008460 2.6e-30 136.3 187 43.3
Ca_14025_v3 Cicer arietinum L. HOM05D006789 ORTHO05D008460 1.3e-29 134.0 112 62.5
Gorai.010G208600 Gossypium raimondii HOM05D006789 ORTHO05D008460 2.2e-29 133.3 143 55.2
TAR633G1630 Trochodendron aralioides HOM05D006789 ORTHO05D008460 4.8e-29 132.1 86 76.7
TAR629G1007 Trochodendron aralioides HOM05D001508 ORTHO05D008460 4.1e-28 129.0 79 79.7
SMO364G0543 Selaginella moellendorffii HOM05D006789 ORTHO05D008460 1.2e-27 127.5 181 43.6
SMO353G0288 Selaginella moellendorffii HOM05D006789 ORTHO05D008460 3.9e-23 112.5 171 43.3
TAR636G3403 Trochodendron aralioides HOM05D006789 ORTHO05D008460 1.5e-22 110.5 72 77.8
CBR_g54451 Chara braunii HOM05D003248 ORTHO05D000301 3.5e-19 99.4 239 31.0
BcaB03g15210 Brassica carinata HOM05D006789 ORTHO05D008460 2.5e-17 93.2 97 52.6
Cfa005731 Carpinus fangiana HOM05D012552 ORTHO05D018926 1.6e-16 90.5 91 53.8
Cfa006091 Carpinus fangiana HOM05D006789 ORTHO05D008460 6.7e-15 85.1 84 56.0
Phvul.005G010900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 1.2e-14 84.3 102 51.0
AUR62034099 Chenopodium quinoa HOM05D006789 ORTHO05D008460 8.2e-13 78.2 61 72.1
SHI21242 Sapria himalayana HOM05D006789 ORTHO05D008460 4.1e-12 75.9 83 51.8
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 3.5e-11 72.8 72 50.0
Cre16.g683483 Chlamydomonas reinhardtii HOM05D006789 ORTHO05D008460 2.2e-10 70.1 106 39.6
Cfa010304 Carpinus fangiana HOM05D012552 ORTHO05D018926 3.6e-08 62.8 94 45.7


User provided reference genes

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