Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012287.2 Cucumis melo HOM05D007426 ORTHO05D009167 1.1e-125 454.9 225 100.0
CsaV3_5G034750 Cucumis sativus L. HOM05D007426 ORTHO05D009167 7.4e-114 415.6 223 91.9
ClCG04G001050 Citrullus lanatus HOM05D007426 ORTHO05D009167 2.9e-102 377.1 216 87.0
Sed0007337 Sechium edule HOM05D007426 ORTHO05D009167 4.8e-89 333.2 211 78.7
QL01p003061 Quercus lobata HOM05D007426 ORTHO05D009167 1.0e-86 325.5 225 69.3
Manes.06G063200 Manihot esculenta HOM05D007426 ORTHO05D009167 1.1e-80 305.4 225 64.4
CiPaw.05G245100 Carya illinoinensis HOM05D007426 ORTHO05D009167 7.2e-77 292.7 209 67.0
Haze_00680 Corylus avellana HOM05D007426 ORTHO05D009167 2.7e-76 290.8 207 67.6
MD13G1032800 Malus domestica HOM05D007426 ORTHO05D009167 9.7e-74 282.3 226 61.5
MD16G1034800 Malus domestica HOM05D007426 ORTHO05D009167 3.7e-73 280.4 229 59.4
Ciclev10017504m.g Citrus clementina HOM05D007426 ORTHO05D009167 3.6e-68 263.8 230 57.0
Gorai.005G194300 Gossypium raimondii HOM05D007426 ORTHO05D009167 5.2e-67 260.0 235 58.3
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 6.8e-67 259.6 197 62.9
Gohir.A03G149700 Gossypium hirsutum HOM05D007426 ORTHO05D009167 1.2e-66 258.8 236 58.1
Gohir.D02G172600 Gossypium hirsutum HOM05D007426 ORTHO05D009167 1.2e-66 258.8 236 57.6
Atru.chr11.331 Acer truncatum HOM05D007426 ORTHO05D009167 9.8e-66 255.8 220 58.6
Duzib248G0356 Durio zibethinus HOM05D007426 ORTHO05D009167 1.7e-65 255.0 216 59.7
Dinv04907 Davidia involucrata HOM05D007426 ORTHO05D009167 4.1e-64 250.4 233 58.4
Cpa.g.sc65.89 Carica papaya HOM05D007426 ORTHO05D009167 5.4e-64 250.0 218 56.9
GSVIVG01011807001 Vitis vinifera HOM05D000798 ORTHO05D000659 7.0e-64 249.6 213 58.7
CSS0006507 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 3.5e-63 247.3 235 55.7
Nn3g17999 Nelumbo nucifera HOM05D007426 ORTHO05D009167 1.5e-61 241.9 226 54.9
TAR629G2850 Trochodendron aralioides HOM05D007426 ORTHO05D009167 3.2e-61 240.7 221 55.2
RcHm_v2.0_Chr4g0434041 Rosa chinensis HOM05D007426 ORTHO05D009167 6.1e-60 236.5 223 57.4
Aqoxy3G03989 Aquilegia oxysepala HOM05D007426 ORTHO05D009167 2.3e-59 234.6 224 51.8
TWI79G0655 Tripterygium wilfordii HOM05D007426 ORTHO05D009167 2.6e-58 231.1 208 59.6
Hma1.2p1_0882F.1_g232200 Hydrangea macrophylla HOM05D007426 ORTHO05D009167 7.5e-58 229.6 218 57.3
THA.LOC104821759 Tarenaya hassleriana HOM05D007426 ORTHO05D009167 6.3e-57 226.5 226 50.4
CANSAT01G1275 Cannabis sativa HOM05D007426 ORTHO05D009167 2.4e-56 224.6 204 56.9
Lj3A877T95 Lonicera japonica HOM05D007426 ORTHO05D009167 3.5e-55 220.7 240 52.1
Eucgr.G00774 Eucalyptus grandis HOM05D007426 ORTHO05D009167 2.3e-54 218.0 222 50.0
Sc11g0003960 Simmondsia chinensis HOM05D007426 ORTHO05D009167 7.3e-53 213.0 206 49.5
PGR119G0474 Punica granatum HOM05D007426 ORTHO05D009167 6.1e-52 209.9 228 50.9
Cc11_g09290 Coffea canephora HOM05D007426 ORTHO05D009167 1.4e-48 198.7 178 56.2
MSTRG.13563 Avicennia marina HOM05D007426 ORTHO05D009167 2.4e-48 198.0 250 45.2
Rhsim09G0137400 Rhododendron simsii HOM05D007426 ORTHO05D009167 2.4e-48 198.0 234 48.3
Sopen05g004400 Solanum pennellii HOM05D007426 ORTHO05D009167 5.4e-48 196.8 178 55.6
PGSC0003DMG402030517 Solanum tuberosum HOM05D007426 ORTHO05D009167 7.0e-48 196.4 178 56.7
FAN12G1804 Fragaria x ananassa HOM05D007426 ORTHO05D009167 1.6e-47 195.3 224 47.3
Solyc05g008560.1 Solanum lycopersicum HOM05D007426 ORTHO05D009167 2.0e-47 194.9 178 54.5
Actinidia34749 Actinidia chinensis HOM05D007426 ORTHO05D009167 7.8e-47 193.0 211 51.2
FAN12G0928 Fragaria x ananassa HOM05D007426 ORTHO05D009167 1.0e-46 192.6 225 47.6
Nitab4.5_0000350g0090 Nicotiana tabacum HOM05D007426 ORTHO05D009167 1.7e-46 191.8 187 50.8
SGA_v2.0_scaffold376G50296 Striga asiatica HOM05D007426 ORTHO05D009167 3.0e-46 191.0 174 52.3
vmacro10360 Vaccinium macrocarpon HOM05D007426 ORTHO05D009167 5.0e-46 190.3 224 48.7
Aa31LG7G6970 Aethionema arabicum HOM05D007426 ORTHO05D009167 7.3e-45 186.4 220 45.5
Nitab4.5_0003886g0020 Nicotiana tabacum HOM05D007426 ORTHO05D009167 7.3e-45 186.4 179 50.3
CARHR023340 Cardamine hirsuta HOM05D007426 ORTHO05D009167 8.0e-44 183.0 231 45.9
Lsat_1_v5_gn_4_15701 Lactuca sativa HOM05D007426 ORTHO05D009167 1.8e-43 181.8 236 47.0
Thhalv10006897m.g Eutrema salsugineum HOM05D007426 ORTHO05D009167 4.0e-43 180.6 230 44.8
AL1G36520 Arabidopsis lyrata HOM05D007426 ORTHO05D009167 5.2e-43 180.3 218 45.9
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 5.8e-42 176.8 146 59.6
arahy.Tifrunner.gnm1.ann1.A3A4LS Arachis hypogaea HOM05D007426 ORTHO05D009167 1.3e-41 175.6 177 51.4
AT1G22960 Arabidopsis thaliana HOM05D007426 ORTHO05D009167 2.2e-41 174.9 222 44.1
arahy.Tifrunner.gnm1.ann1.5H8JFW Arachis hypogaea HOM05D003289 ORTHO05D009167 2.2e-41 174.9 175 51.4
CDE04G0172 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 8.3e-41 172.9 201 46.8
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 4.1e-40 170.6 142 60.6
Lj2g0001206 Lotus japonicus HOM05D007426 ORTHO05D009167 1.2e-39 169.1 142 61.3
SalBow8G0581 Salvia bowleyana HOM05D007426 ORTHO05D009167 1.2e-39 169.1 190 47.4
Carub.0001s2246 Capsella rubella HOM05D007426 ORTHO05D009167 1.6e-39 168.7 230 42.6
Lalb_Chr10g0096341 Lupinus albus HOM05D007426 ORTHO05D009167 1.0e-38 166.0 222 43.2
Sp1g20420 Schrenkiella parvula HOM05D007426 ORTHO05D009167 1.3e-38 165.6 219 43.8
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 2.3e-38 164.9 208 46.2
Glyma.13G034900 Glycine max HOM05D007426 ORTHO05D009167 6.6e-38 163.3 150 56.0
CAN.G1489.16 Capsicum annuum HOM05D007426 ORTHO05D009167 1.9e-37 161.8 146 57.5
BolC5t30917H Brassica oleracea HOM05D007426 ORTHO05D009167 2.5e-37 161.4 228 42.1
Ca_12586_v3 Cicer arietinum L. HOM05D007426 ORTHO05D009167 2.5e-37 161.4 158 53.8
C05p22170 Brassica napus HOM05D007426 ORTHO05D009167 4.3e-37 160.6 177 46.9
Psat6g044600 Pisum sativum HOM05D007426 ORTHO05D009167 1.6e-36 158.7 211 43.6
BcaC05g26208 Brassica carinata HOM05D007426 ORTHO05D009167 2.1e-36 158.3 229 41.5
VMungo1215G1392 Vigna mungo HOM05D007426 ORTHO05D009167 2.1e-36 158.3 160 53.1
Phvul.003G029100 Phaseolus vulgaris HOM05D007426 ORTHO05D009167 2.8e-36 157.9 160 53.1
Medtr1g031720 Medicago truncatula HOM05D007426 ORTHO05D009167 6.2e-36 156.8 197 42.1
BraA09t39664Z Brassica rapa HOM05D007426 ORTHO05D009167 1.4e-35 155.6 164 48.2
HPP92_023011 Vanilla planifolia HOM05D007426 ORTHO05D009167 7.5e-34 149.8 164 44.5
BcaB07g32294 Brassica carinata HOM05D007426 ORTHO05D009167 1.3e-33 149.1 222 43.2
A01p19900 Brassica napus HOM05D007426 ORTHO05D009167 1.3e-33 149.1 159 47.8
ECA234G2171 Erigeron canadensis HOM05D007426 ORTHO05D009167 3.7e-33 147.5 177 46.9
A09p41750 Brassica napus HOM05D007426 ORTHO05D009167 1.9e-32 145.2 210 41.9
Migut.E00390 Erythranthe guttata HOM05D007426 ORTHO05D009167 6.0e-31 140.2 143 45.5
Oeu048376.1 Olea europaea HOM05D007426 ORTHO05D009167 1.5e-29 135.6 173 44.5
ATR0579G149 Amborella trichopoda HOM05D007426 ORTHO05D009167 1.2e-28 132.5 201 38.8
CSS0028756 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 1.6e-28 132.1 91 67.0
Cfa015816 Carpinus fangiana HOM05D007426 ORTHO05D009167 1.9e-24 118.6 75 69.3
TPR.G36966 Trifolium pratense HOM05D007426 ORTHO05D009167 4.3e-21 107.5 143 46.2
BcaB03g11918 Brassica carinata HOM05D007426 ORTHO05D009167 4.0e-19 100.9 168 36.9
FvH4_4g26410 Fragaria vesca HOM05D007426 ORTHO05D009167 6.9e-19 100.1 102 47.1
FAN17G2923 Fragaria x ananassa HOM05D007426 ORTHO05D009167 1.4e-16 92.4 93 49.5
SEGI_36761 Sequoiadendron giganteum HOM05D007426 ORTHO05D009167 7.3e-13 80.1 168 30.4
FAN07G1506 Fragaria x ananassa HOM05D007426 ORTHO05D009167 2.8e-12 78.2 73 50.7
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 1.4e-11 75.9 78 51.3
Oeu048390.1 Olea europaea HOM05D000798 ORTHO05D000659 9.9e-10 69.7 167 31.1
EL10Ac6g15406 Beta vulgaris HOM05D007496 ORTHO05D009479 4.2e-08 64.3 228 25.0
Zm00001eb406750 Zea mays HOM05D025020 ORTHO05D009167 4.6e-07 60.8 136 35.3
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 7.9e-07 60.1 129 28.7
Ah.02g120040 Amaranthus hybridus HOM05D007496 ORTHO05D009479 1.0e-06 59.7 197 25.4
Manes.16G011600 Manihot esculenta HOM05D007956 ORTHO05D010152 1.8e-06 58.9 153 26.1
CAN.G371.124 Capsicum annuum HOM05D007639 ORTHO05D009509 2.3e-06 58.5 133 28.6
Cpa.g.sc207.2 Carica papaya HOM05D007639 ORTHO05D009509 2.3e-06 58.5 132 30.3
MD00G1180200 Malus domestica HOM05D007956 ORTHO05D010152 3.0e-06 58.2 140 28.6
SEGI_39034 Sequoiadendron giganteum HOM05D007675 ORTHO05D009699 3.0e-06 58.2 129 25.6
Zm00001eb164150 Zea mays HOM05D025020 ORTHO05D009167 3.0e-06 58.2 135 34.1
HanXRQChr05g0162401 Helianthus annuus HOM05D007390 ORTHO05D009114 5.1e-06 57.4 123 28.5
Potri.004G020900 Populus trichocarpa HOM05D007956 ORTHO05D010152 5.1e-06 57.4 161 29.2
Sabra04G0011500 Salix brachista HOM05D007956 ORTHO05D010152 8.7e-06 56.6 157 28.7


User provided reference genes

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