Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012254.2 Cucumis melo HOM05D004761 ORTHO05D005813 2.6e-170 602.1 329 100.0
CsaV3_5G034380 Cucumis sativus L. HOM05D004761 ORTHO05D005813 2.1e-122 443.0 329 78.1
ClCG05G022660 Citrullus lanatus HOM05D004761 ORTHO05D005813 2.8e-119 432.6 329 76.3
Sed0020611 Sechium edule HOM05D004761 ORTHO05D005813 3.1e-110 402.5 329 69.6
Manes.14G102900 Manihot esculenta HOM05D004761 ORTHO05D005813 1.4e-91 340.5 317 63.1
TAR629G2706 Trochodendron aralioides HOM05D004761 ORTHO05D005813 2.7e-90 336.3 316 62.0
Gohir.D02G170400 Gossypium hirsutum HOM05D004761 ORTHO05D005813 2.3e-89 333.2 319 62.1
TWI79G0635 Tripterygium wilfordii HOM05D004761 ORTHO05D005813 2.3e-89 333.2 331 59.5
Gohir.A03G147200 Gossypium hirsutum HOM05D004761 ORTHO05D005813 6.7e-89 331.6 319 61.8
Ciclev10016274m.g Citrus clementina HOM05D004761 ORTHO05D005813 1.5e-88 330.5 323 61.0
Potri.008G121100 Populus trichocarpa HOM05D004761 ORTHO05D005813 1.5e-88 330.5 319 61.1
QL01p042268 Quercus lobata HOM05D004761 ORTHO05D005813 2.5e-88 329.7 354 57.6
Dinv21082 Davidia involucrata HOM05D004761 ORTHO05D005813 9.6e-88 327.8 320 61.2
CSS0041255 Camellia sinensis var. sinensis HOM05D004761 ORTHO05D005813 1.3e-87 327.4 320 60.0
Prupe.1G311800 Prunus persica HOM05D004761 ORTHO05D005813 1.3e-87 327.4 297 63.0
Sopen05g005170 Solanum pennellii HOM05D004761 ORTHO05D005813 1.3e-87 327.4 324 61.1
MD16G1042300 Malus domestica HOM05D004761 ORTHO05D005813 1.6e-87 327.0 297 63.0
GSVIVG01011891001 Vitis vinifera HOM05D004761 ORTHO05D005813 1.6e-87 327.0 316 61.1
CANSAT01G0623 Cannabis sativa HOM05D004761 ORTHO05D005813 2.1e-87 326.6 330 60.0
CiPaw.16G065200 Carya illinoinensis HOM05D004761 ORTHO05D005813 2.8e-87 326.2 315 61.3
FAN07G1541 Fragaria x ananassa HOM05D004761 ORTHO05D005813 2.8e-87 326.2 304 61.5
PGSC0003DMG400014544 Solanum tuberosum HOM05D004761 ORTHO05D005813 1.1e-86 324.3 322 60.9
BcaB07g30626 Brassica carinata HOM05D004761 ORTHO05D005813 1.4e-86 323.9 318 60.4
Oeu003182.1 Olea europaea HOM05D004761 ORTHO05D005813 1.4e-86 323.9 318 61.0
Gorai.005G191400 Gossypium raimondii HOM05D004761 ORTHO05D005813 1.8e-86 323.6 317 60.6
Hma1.2p1_0061F.1_g033840 Hydrangea macrophylla HOM05D004761 ORTHO05D005813 2.4e-86 323.2 317 59.9
Sabra08G0091800 Salix brachista HOM05D004761 ORTHO05D005813 2.4e-86 323.2 303 61.7
TWI31G0637 Tripterygium wilfordii HOM05D004761 ORTHO05D005813 2.4e-86 323.2 334 56.3
Eucgr.G02317 Eucalyptus grandis HOM05D004761 ORTHO05D005813 4.0e-86 322.4 320 60.0
FAN22G1660 Fragaria x ananassa HOM05D004761 ORTHO05D005813 9.0e-86 321.2 304 60.9
MD13G1041400 Malus domestica HOM05D004761 ORTHO05D005813 9.0e-86 321.2 309 60.8
THA.LOC104825698 Tarenaya hassleriana HOM05D004761 ORTHO05D005813 9.0e-86 321.2 320 60.6
Cpa.g.sc1.34 Carica papaya HOM05D004761 ORTHO05D005813 1.5e-85 320.5 339 59.3
PGR119G1215 Punica granatum HOM05D004761 ORTHO05D005813 1.5e-85 320.5 320 60.9
Duzib248G0790 Durio zibethinus HOM05D004761 ORTHO05D005813 3.4e-85 319.3 319 60.5
Thhalv10004759m.g Eutrema salsugineum HOM05D004761 ORTHO05D005813 4.5e-85 318.9 322 58.7
Cfa018591 Carpinus fangiana HOM05D004761 ORTHO05D005813 5.8e-85 318.5 317 59.6
Sp2g15160 Schrenkiella parvula HOM05D004761 ORTHO05D005813 1.3e-84 317.4 322 59.0
MSTRG.843 Avicennia marina HOM05D004761 ORTHO05D005813 1.7e-84 317.0 317 58.7
BolC7t44030H Brassica oleracea HOM05D004761 ORTHO05D005813 2.9e-84 316.2 320 58.8
BraA09t38096Z Brassica rapa HOM05D004761 ORTHO05D005813 3.8e-84 315.8 322 58.1
A09p25090 Brassica napus HOM05D004761 ORTHO05D005813 6.5e-84 315.1 322 58.1
FvH4_4g27310 Fragaria vesca HOM05D004761 ORTHO05D005813 8.4e-84 314.7 304 60.2
FAN12G1206 Fragaria x ananassa HOM05D004761 ORTHO05D005813 8.4e-84 314.7 304 60.2
FAN12G1874 Fragaria x ananassa HOM05D004761 ORTHO05D005813 8.4e-84 314.7 304 60.2
BcaC06g31103 Brassica carinata HOM05D004761 ORTHO05D005813 2.5e-83 313.2 310 59.4
Cc11_g10100 Coffea canephora HOM05D004761 ORTHO05D005813 5.5e-83 312.0 325 59.4
C09p32130 Brassica napus HOM05D004761 ORTHO05D005813 7.1e-83 311.6 323 58.5
Migut.E00345 Erythranthe guttata HOM05D004761 ORTHO05D005813 7.1e-83 311.6 317 59.9
CAN.G610.79 Capsicum annuum HOM05D004761 ORTHO05D005813 1.2e-82 310.8 319 59.6
RcHm_v2.0_Chr4g0435111 Rosa chinensis HOM05D004761 ORTHO05D005813 1.6e-82 310.5 301 59.1
Sc11g0003470 Simmondsia chinensis HOM05D004761 ORTHO05D005813 2.1e-82 310.1 316 58.5
A06p42360 Brassica napus HOM05D004761 ORTHO05D005813 2.7e-82 309.7 304 59.9
BraA06t27151Z Brassica rapa HOM05D004761 ORTHO05D005813 2.7e-82 309.7 304 59.9
HanXRQChr15g0476311 Helianthus annuus HOM05D004761 ORTHO05D005813 2.7e-82 309.7 317 59.9
BcaC04g21408 Brassica carinata HOM05D004761 ORTHO05D005813 3.5e-82 309.3 323 57.6
C07p34980 Brassica napus HOM05D004761 ORTHO05D005813 3.5e-82 309.3 323 58.2
BolC9t56063H Brassica oleracea HOM05D004761 ORTHO05D005813 3.5e-82 309.3 323 57.6
Gohir.D11G344800 Gossypium hirsutum HOM05D004761 ORTHO05D005813 3.5e-82 309.3 316 58.5
CARHR146910 Cardamine hirsuta HOM05D004761 ORTHO05D005813 4.6e-82 308.9 324 58.0
Gorai.007G375200 Gossypium raimondii HOM05D004761 ORTHO05D005813 6.0e-82 308.5 316 58.5
AL5G14580 Arabidopsis lyrata HOM05D004761 ORTHO05D005813 7.9e-82 308.1 322 58.4
Lsat_1_v5_gn_3_59080 Lactuca sativa HOM05D004761 ORTHO05D005813 1.8e-81 307.0 322 57.8
DCAR_023656 Daucus carota HOM05D004761 ORTHO05D005813 2.3e-81 306.6 334 56.0
Peaxi162Scf00382g00825 Petunia axillaris HOM05D004761 ORTHO05D005813 3.0e-81 306.2 332 57.2
Nitab4.5_0000791g0110 Nicotiana tabacum HOM05D004761 ORTHO05D005813 3.9e-81 305.8 311 59.5
arahy.Tifrunner.gnm1.ann1.BGN30W Arachis hypogaea HOM05D004761 ORTHO05D005813 8.7e-81 304.7 334 56.0
EL10Ac6g14394 Beta vulgaris HOM05D004761 ORTHO05D005813 8.7e-81 304.7 321 56.7
Carub.0005s0378 Capsella rubella HOM05D004761 ORTHO05D005813 8.7e-81 304.7 320 58.1
Aa31LG2G6400 Aethionema arabicum HOM05D004761 ORTHO05D005813 1.5e-80 303.9 319 56.7
Nitab4.5_0003373g0010 Nicotiana tabacum HOM05D004761 ORTHO05D005813 1.5e-80 303.9 311 58.8
Potri.010G124301 Populus trichocarpa HOM05D004761 ORTHO05D005813 2.5e-80 303.1 308 58.8
arahy.Tifrunner.gnm1.ann1.8WFG9Z Arachis hypogaea HOM05D004761 ORTHO05D005813 3.3e-80 302.8 274 63.1
CDE05G1514 Ceratophyllum demersum HOM05D004761 ORTHO05D005813 4.3e-80 302.4 324 55.6
BcaC06g33937 Brassica carinata HOM05D004761 ORTHO05D005813 5.7e-80 302.0 320 57.2
arahy.Tifrunner.gnm1.ann1.QJ0JEK Arachis hypogaea HOM05D004761 ORTHO05D005813 9.7e-80 301.2 274 62.8
ECA246G4195 Erigeron canadensis HOM05D004761 ORTHO05D005813 9.7e-80 301.2 315 57.8
Glyma.20G116100 Glycine max HOM05D004761 ORTHO05D005813 9.7e-80 301.2 300 60.0
VMungo0720G0616 Vigna mungo HOM05D004761 ORTHO05D005813 9.7e-80 301.2 296 59.1
Psat6g225000 Pisum sativum HOM05D004761 ORTHO05D005813 8.2e-79 298.1 309 58.9
Aqoxy3G00293 Aquilegia oxysepala HOM05D004761 ORTHO05D005813 1.1e-78 297.7 313 56.2
AT3G25920 Arabidopsis thaliana HOM05D004761 ORTHO05D005813 3.1e-78 296.2 323 56.7
Lj3C1014G6 Lonicera japonica HOM05D004761 ORTHO05D005813 4.1e-78 295.8 294 58.8
SGA_v2.0_scaffold170G38770 Striga asiatica HOM05D004761 ORTHO05D005813 1.2e-77 294.3 313 57.8
Lj5g0002032 Lotus japonicus HOM05D004761 ORTHO05D005813 1.5e-77 293.9 322 55.6
Phvul.007G027600 Phaseolus vulgaris HOM05D004761 ORTHO05D005813 1.5e-77 293.9 297 58.2
Rhsim09G0107700 Rhododendron simsii HOM05D004761 ORTHO05D005813 1.3e-76 290.8 318 56.3
Medtr1g110750 Medicago truncatula HOM05D004761 ORTHO05D005813 3.8e-76 289.3 298 57.4
vmacro10560 Vaccinium macrocarpon HOM05D004761 ORTHO05D005813 3.8e-76 289.3 316 57.0
CDE05G0568 Ceratophyllum demersum HOM05D004761 ORTHO05D005813 5.0e-76 288.9 324 53.7
Thecc.02G229900 Theobroma cacao HOM05D004761 ORTHO05D005813 8.5e-76 288.1 319 56.7
Lalb_Chr21g0308901 Lupinus albus HOM05D004761 ORTHO05D005813 1.4e-75 287.3 332 54.5
Ah.02g127920 Amaranthus hybridus HOM05D004761 ORTHO05D005813 1.9e-75 287.0 328 55.2
ATR0171G026 Amborella trichopoda HOM05D004761 ORTHO05D005813 9.4e-75 284.6 290 58.3
Hund25060 Selenicereus undatus HOM05D004761 ORTHO05D005813 2.7e-74 283.1 321 53.9
Lalb_Chr02g0145941 Lupinus albus HOM05D004761 ORTHO05D005813 1.0e-73 281.2 313 55.6
arahy.Tifrunner.gnm1.ann1.B0KB7I Arachis hypogaea HOM05D004761 ORTHO05D005813 1.4e-73 280.8 381 49.3
AUR62002860 Chenopodium quinoa HOM05D004761 ORTHO05D005813 1.4e-73 280.8 261 60.9
PSO717G0038 Papaver somniferum HOM05D004761 ORTHO05D005813 2.3e-73 280.0 315 54.3
PSO675G3483 Papaver somniferum HOM05D004761 ORTHO05D005813 3.9e-73 279.3 311 53.7
AUR62035212 Chenopodium quinoa HOM05D004761 ORTHO05D005813 5.1e-73 278.9 245 63.3
SEGI_01542 Sequoiadendron giganteum HOM05D004761 ORTHO05D005813 8.8e-73 278.1 316 54.1
Ah.03g137610 Amaranthus hybridus HOM05D004761 ORTHO05D005813 1.4e-70 270.8 307 54.4
Os03g0219900 Oryza sativa ssp. japonica HOM05D004761 ORTHO05D005813 6.9e-70 268.5 274 55.5
Zm00001eb008910 Zea mays HOM05D004761 ORTHO05D005813 5.9e-69 265.4 326 50.6
Haze_17489 Corylus avellana HOM05D004761 ORTHO05D005813 1.7e-68 263.8 438 42.5
MBI19_g21031_MAGBIO Magnolia biondii HOM05D004761 ORTHO05D005813 1.9e-67 260.4 227 63.9
Actinidia16656 Actinidia chinensis HOM05D004761 ORTHO05D005813 1.5e-64 250.8 317 52.4
Solyc05g009370.4 Solanum lycopersicum HOM05D004761 ORTHO05D005813 3.7e-63 246.1 206 66.5
AagrBONN_evm.TU.Sc2ySwM_228.2844 Anthoceros agrestis HOM05D004761 ORTHO05D005813 4.5e-61 239.2 241 56.0
Mapoly0065s0007 Marchantia polymorpha HOM05D004761 ORTHO05D005813 4.5e-61 239.2 241 56.4
Pp3c8_18220 Physcomitrium patens HOM05D004761 ORTHO05D005813 4.7e-58 229.2 316 47.5
HPP92_009433 Vanilla planifolia HOM05D004761 ORTHO05D005813 4.7e-58 229.2 282 53.2
Ca_11170_v3 Cicer arietinum L. HOM05D004761 ORTHO05D005813 1.0e-57 228.0 206 62.1
Pp3c23_7670 Physcomitrium patens HOM05D004761 ORTHO05D005813 1.4e-57 227.6 241 54.4
Pp3c24_11450 Physcomitrium patens HOM05D004761 ORTHO05D005813 1.8e-57 227.3 264 51.9
Pp3c20_9200 Physcomitrium patens HOM05D004761 ORTHO05D005813 2.3e-57 226.9 241 54.8
SMO203G0084 Selaginella moellendorffii HOM05D004761 ORTHO05D005813 3.0e-57 226.5 251 54.2
TPR.G18808 Trifolium pratense HOM05D004761 ORTHO05D000002 1.2e-50 204.5 311 45.7
COL.COLO4_29943 Corchorus olitorius HOM05D004761 ORTHO05D005813 2.1e-50 203.8 124 83.9
unitig_22.g5574 Utricularia gibba HOM05D004761 ORTHO05D005813 4.7e-50 202.6 322 45.3
CBR_g6324 Chara braunii HOM05D004761 ORTHO05D005813 2.6e-48 196.8 225 49.8
arahy.Tifrunner.gnm1.ann1.V6GCEW Arachis hypogaea HOM05D004761 ORTHO05D005813 6.5e-44 182.2 124 76.6
HPP92_009407 Vanilla planifolia HOM05D004761 ORTHO05D005813 1.5e-43 181.0 257 46.7
Nn4g24161 Nelumbo nucifera HOM05D004761 ORTHO05D005813 9.4e-43 178.3 149 70.5
Gohir.D02G170233 Gossypium hirsutum HOM05D004761 ORTHO05D005813 3.0e-41 173.3 113 78.8
Gohir.A11G325900 Gossypium hirsutum HOM05D004761 ORTHO05D005813 9.8e-40 168.3 182 54.4
PRCOL_00000889 Prasinoderma coloniale HOM05D004761 ORTHO05D005813 1.6e-37 161.0 243 42.4
Cre14.g612450 Chlamydomonas reinhardtii HOM05D004761 ORTHO05D005813 2.0e-37 160.6 253 41.9
TPR.G862 Trifolium pratense HOM05D004761 ORTHO05D005813 5.9e-37 159.1 173 53.2
unitig_24.g30582 Utricularia gibba HOM05D004761 ORTHO05D005813 2.2e-31 140.6 148 58.1
HanXRQChr17g0552301 Helianthus annuus HOM05D004761 ORTHO05D005813 4.9e-31 139.4 144 59.0
Actinidia14894 Actinidia chinensis HOM05D004761 ORTHO05D005813 4.1e-30 136.3 124 63.7
MCO09G351 Micromonas commoda HOM05D004761 ORTHO05D005813 5.0e-28 129.4 200 40.5
Nn3g17852 Nelumbo nucifera HOM05D004761 ORTHO05D005813 4.7e-26 122.9 99 66.7
TAR371G1076 Trochodendron aralioides HOM05D004761 ORTHO05D005813 6.1e-26 122.5 78 76.9
Gorai.005G190700 Gossypium raimondii HOM05D004761 ORTHO05D005813 1.4e-25 121.3 110 61.8
Gohir.D02G170133 Gossypium hirsutum HOM05D004761 ORTHO05D005813 4.0e-25 119.8 110 60.9
Hma1.2p1_0798F.1_g219870 Hydrangea macrophylla HOM05D004761 ORTHO05D005813 3.4e-24 116.7 77 76.6
Atru.chr11.97 Acer truncatum HOM05D004761 ORTHO05D005813 4.4e-24 116.3 315 34.9
COL.COLO4_29942 Corchorus olitorius HOM05D004761 ORTHO05D005813 4.9e-23 112.8 61 91.8
Hma1.2p1_0061F.1_g033850 Hydrangea macrophylla HOM05D004761 ORTHO05D005813 3.9e-20 103.2 60 83.3
Sabra10G0094300 Salix brachista HOM05D004761 ORTHO05D005813 1.5e-19 101.3 220 36.8
Oeu056572.1 Olea europaea HOM05D004761 ORTHO05D005813 3.3e-19 100.1 78 70.5
Nn4g23851 Nelumbo nucifera HOM05D004761 ORTHO05D005813 3.7e-15 86.7 70 67.1
Aqoxy5G02814 Aquilegia oxysepala HOM05D004761 ORTHO05D005813 1.4e-14 84.7 47 87.2
Sc11g0004060 Simmondsia chinensis HOM05D004761 ORTHO05D005813 7.0e-14 82.4 50 78.0
DCAR_026734 Daucus carota HOM05D004761 ORTHO05D005813 9.2e-14 82.0 76 57.9
Nn2g14253 Nelumbo nucifera HOM05D004761 ORTHO05D005813 4.6e-13 79.7 43 83.7
Atru.chr2.2517 Acer truncatum HOM05D004761 ORTHO05D005813 2.3e-09 67.4 39 84.6
Haze_26805 Corylus avellana HOM05D005288 ORTHO05D006574 8.9e-09 65.5 214 29.9
Oeu056574.1 Olea europaea HOM05D004761 ORTHO05D037944 1.2e-08 65.1 71 53.5
Nitab4.5_0000057g0250 Nicotiana tabacum HOM05D004761 ORTHO05D005813 7.5e-08 62.4 30 96.7
Pp3c25_6490 Physcomitrium patens HOM05D005288 ORTHO05D006574 2.2e-07 60.8 69 50.7
PRCOL_00002014 Prasinoderma coloniale HOM05D005288 ORTHO05D006574 2.2e-07 60.8 83 43.4
Zm00001eb129960 Zea mays HOM05D005288 ORTHO05D006574 3.7e-07 60.1 85 45.9
Os08g0310100 Oryza sativa ssp. japonica HOM05D005288 ORTHO05D006574 4.9e-07 59.7 81 46.9
Sc22g0002320 Simmondsia chinensis HOM05D005288 ORTHO05D006574 8.3e-07 58.9 120 40.0
unitig_27.g25064 Utricularia gibba HOM05D005288 ORTHO05D006574 8.3e-07 58.9 105 38.1
MSTRG.23423 Avicennia marina HOM05D005288 ORTHO05D006574 1.4e-06 58.2 61 52.5
Hund15173 Selenicereus undatus HOM05D005288 ORTHO05D006574 1.4e-06 58.2 61 54.1
SGA_v2.0_scaffold76G25165 Striga asiatica HOM05D005288 ORTHO05D006574 1.4e-06 58.2 75 46.7
Atru.chr2.2498 Acer truncatum HOM05D004761 ORTHO05D037944 2.4e-06 57.4 32 84.4
SGA_v2.0_scaffold146G36155 Striga asiatica HOM05D005288 ORTHO05D006574 2.4e-06 57.4 61 52.5
MSTRG.2688 Avicennia marina HOM05D005288 ORTHO05D006574 4.1e-06 56.6 61 50.8
AUR62037110 Chenopodium quinoa HOM05D005288 ORTHO05D006574 5.4e-06 56.2 61 52.5
AagrBONN_evm.TU.Sc2ySwM_344.1252 Anthoceros agrestis HOM05D005288 ORTHO05D000776 7.1e-06 55.8 70 50.0
EL10As1g23109 Beta vulgaris HOM05D005288 ORTHO05D006574 7.1e-06 55.8 61 52.5
Migut.H01124 Erythranthe guttata HOM05D005288 ORTHO05D006574 7.1e-06 55.8 61 50.8
Lj4A865T28 Lonicera japonica HOM05D005288 ORTHO05D006574 7.1e-06 55.8 83 48.2
Ah.12g062320 Amaranthus hybridus HOM05D005288 ORTHO05D006574 9.2e-06 55.5 61 52.5
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 9.2e-06 55.5 61 54.1


User provided reference genes

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