Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012244.2 Cucumis melo HOM05D004942 ORTHO05D005687 0.0e+00 2518.0 1248 100.0
ClCG05G022730 Citrullus lanatus HOM05D004942 ORTHO05D005687 0.0e+00 1853.2 1273 76.7
CsaV3_5G034290 Cucumis sativus L. HOM05D004942 ORTHO05D005687 0.0e+00 1672.1 1017 84.0
Sed0022979 Sechium edule HOM05D004942 ORTHO05D005687 0.0e+00 1556.6 1290 65.9
Prupe.1G290000 Prunus persica HOM05D004942 ORTHO05D005687 8.4e-193 678.7 1320 36.4
Haze_11879 Corylus avellana HOM05D004942 ORTHO05D005687 1.2e-191 674.9 1364 34.8
Cfa008858 Carpinus fangiana HOM05D004942 ORTHO05D005687 3.0e-190 670.2 1358 35.8
QL03p073561 Quercus lobata HOM05D004942 ORTHO05D005687 4.8e-188 662.9 1371 36.7
CiPaw.06G093500 Carya illinoinensis HOM05D004942 ORTHO05D005687 8.2e-188 662.1 1287 36.2
RcHm_v2.0_Chr4g0437911 Rosa chinensis HOM05D004942 ORTHO05D005687 4.5e-186 656.4 1353 35.9
GSVIVG01012245001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.2e-183 648.3 1291 36.2
MD16G1059100 Malus domestica HOM05D004942 ORTHO05D005687 2.7e-183 647.1 1446 33.7
Thecc.02G326800 Theobroma cacao HOM05D004942 ORTHO05D005687 7.7e-178 629.0 1329 34.6
Manes.01G026200 Manihot esculenta HOM05D004942 ORTHO05D005687 1.1e-176 625.2 1307 35.7
CANSAT64G2200 Cannabis sativa HOM05D004942 ORTHO05D005687 4.2e-176 623.2 1296 34.8
FAN22G2425 Fragaria x ananassa HOM05D004942 ORTHO05D005687 1.3e-172 611.7 1346 34.5
Ciclev10033741m.g Citrus clementina HOM05D004942 ORTHO05D005687 4.1e-171 606.7 1242 36.2
Potri.008G097700 Populus trichocarpa HOM05D004942 ORTHO05D005687 3.4e-170 603.6 1341 32.7
Gorai.008G175800 Gossypium raimondii HOM05D004942 ORTHO05D005687 8.5e-169 599.0 1286 33.7
Duzib251G0048 Durio zibethinus HOM05D004942 ORTHO05D005687 2.7e-167 594.0 1367 33.1
FvH4_4g29660 Fragaria vesca HOM05D004942 ORTHO05D005687 6.1e-167 592.8 1315 34.2
FAN07G2875 Fragaria x ananassa HOM05D004942 ORTHO05D005687 3.0e-166 590.5 1364 33.4
FAN12G1725 Fragaria x ananassa HOM05D004942 ORTHO05D005687 1.3e-161 575.1 1362 33.3
TWI79G0892 Tripterygium wilfordii HOM05D004942 ORTHO05D005687 2.1e-159 567.8 1254 34.5
Glyma.16G091700 Glycine max HOM05D004942 ORTHO05D005687 3.6e-159 567.0 1283 33.7
Nn3g17507 Nelumbo nucifera HOM05D004942 ORTHO05D005687 1.7e-156 558.1 1421 31.5
Rhsim09G0125700 Rhododendron simsii HOM05D004942 ORTHO05D005687 2.3e-150 537.7 1426 31.2
Phvul.003G282800 Phaseolus vulgaris HOM05D004942 ORTHO05D005687 5.2e-150 536.6 1307 31.6
Lj4g0014066 Lotus japonicus HOM05D004942 ORTHO05D005687 3.4e-149 533.9 1314 33.3
Cpa.g.sc1669.1 Carica papaya HOM05D004942 ORTHO05D005687 9.8e-149 532.3 1277 33.4
Hma1.2p1_2519F.1_g323790 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 3.7e-148 530.4 1253 33.4
THA.LOC104822000 Tarenaya hassleriana HOM05D004942 ORTHO05D005687 1.8e-147 528.1 1294 31.5
VMungo0251G2230 Vigna mungo HOM05D004942 ORTHO05D005687 1.2e-146 525.4 1272 31.4
Lalb_Chr09g0334721 Lupinus albus HOM05D004942 ORTHO05D005687 2.7e-146 524.2 1380 31.4
Sc04g0007460 Simmondsia chinensis HOM05D004942 ORTHO05D005687 3.3e-144 517.3 1361 30.8
AUR62007894 Chenopodium quinoa HOM05D004942 ORTHO05D005687 9.5e-144 515.8 1429 31.0
Sabra08G0073900 Salix brachista HOM05D004942 ORTHO05D005687 1.2e-143 515.4 1393 31.4
PGR031G3471 Punica granatum HOM05D004942 ORTHO05D005687 1.8e-142 511.5 1311 30.4
Medtr8g066290 Medicago truncatula HOM05D004942 ORTHO05D005687 1.2e-141 508.8 1293 32.1
Aqoxy3G00534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 5.7e-141 506.5 1356 30.4
Aqoxy4G01534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 1.3e-140 505.4 1346 31.1
Psat4g122040 Pisum sativum HOM05D004942 ORTHO05D005687 2.2e-140 504.6 1225 32.1
A09p39800 Brassica napus HOM05D004942 ORTHO05D005687 4.9e-140 503.4 1330 31.3
Cc11_g11760 Coffea canephora HOM05D004942 ORTHO05D005687 4.9e-140 503.4 1246 32.2
BraA09t39480Z Brassica rapa HOM05D004942 ORTHO05D005687 3.3e-136 490.7 1342 30.8
COL.COLO4_27850 Corchorus olitorius HOM05D004942 ORTHO05D005687 4.3e-136 490.3 1218 32.9
ECA234G0983 Erigeron canadensis HOM05D004942 ORTHO05D005687 2.8e-135 487.6 1280 30.3
CARHR025590 Cardamine hirsuta HOM05D004942 ORTHO05D005687 8.0e-135 486.1 1308 28.8
AL1G39420 Arabidopsis lyrata HOM05D004942 ORTHO05D005687 1.4e-134 485.3 1303 30.5
C05p24600 Brassica napus HOM05D004942 ORTHO05D005687 2.6e-133 481.1 1341 30.3
BolC5t31196H Brassica oleracea HOM05D004942 ORTHO05D005687 2.6e-133 481.1 1341 30.3
Thhalv10006590m.g Eutrema salsugineum HOM05D004942 ORTHO05D005687 9.8e-133 479.2 1309 29.3
BcaC05g26421 Brassica carinata HOM05D004942 ORTHO05D005687 3.7e-132 477.2 1327 29.9
AUR62003077 Chenopodium quinoa HOM05D004942 ORTHO05D005687 1.4e-131 475.3 1511 28.2
Sp1g22360 Schrenkiella parvula HOM05D004942 ORTHO05D005687 1.4e-131 475.3 1287 31.2
Nitab4.5_0000027g0020 Nicotiana tabacum HOM05D004942 ORTHO05D005687 5.4e-131 473.4 1287 30.4
Oeu020362.1 Olea europaea HOM05D004942 ORTHO05D005687 1.3e-129 468.8 1277 31.1
PSO017G2640 Papaver somniferum HOM05D004942 ORTHO05D005687 3.9e-129 467.2 1398 29.4
Hund25161 Selenicereus undatus HOM05D004942 ORTHO05D005687 1.9e-128 464.9 1348 30.1
Peaxi162Scf00175g00531 Petunia axillaris HOM05D004942 ORTHO05D005687 2.5e-128 464.5 1281 30.1
BcaC05g26635 Brassica carinata HOM05D004942 ORTHO05D005687 4.3e-128 463.8 1330 30.2
Carub.0001s2467 Capsella rubella HOM05D004942 ORTHO05D005687 7.3e-128 463.0 1268 30.5
PSO478G0521 Papaver somniferum HOM05D004942 ORTHO05D005687 1.2e-127 462.2 1391 28.8
AT1G26330 Arabidopsis thaliana HOM05D004942 ORTHO05D005687 3.6e-127 460.7 1298 29.0
EL10Ac6g15023 Beta vulgaris HOM05D004942 ORTHO05D005687 4.7e-127 460.3 1358 30.5
HanXRQChr17g0568411 Helianthus annuus HOM05D004942 ORTHO05D005687 8.0e-127 459.5 1275 28.9
Migut.L01173 Erythranthe guttata HOM05D004942 ORTHO05D005687 3.7e-124 450.7 1266 29.6
Psat1g014920 Pisum sativum HOM05D004942 ORTHO05D005687 3.2e-123 447.6 1256 29.4
Hma1.2p1_0566F.1_g179990 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 2.3e-121 441.4 1224 30.6
Nitab4.5_0003545g0010 Nicotiana tabacum HOM05D004942 ORTHO05D005687 1.1e-120 439.1 1297 29.1
MBI16_g37883_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 1.9e-120 438.3 1651 27.7
Ah.03g138750 Amaranthus hybridus HOM05D004942 ORTHO05D005687 2.5e-120 438.0 1317 29.3
TPR.G3371 Trifolium pratense HOM05D004942 ORTHO05D005687 9.5e-120 436.0 1225 30.4
Sopen05g006850 Solanum pennellii HOM05D004942 ORTHO05D005687 4.6e-114 417.2 1556 26.7
SalBow2G1731 Salvia bowleyana HOM05D004942 ORTHO05D005687 6.0e-114 416.8 1247 28.9
Ca_22664_v3 Cicer arietinum L. HOM05D004942 ORTHO05D005687 7.8e-114 416.4 1094 31.6
Lj3A1029T37 Lonicera japonica HOM05D004942 ORTHO05D005687 3.0e-113 414.5 1376 29.4
SGA_v2.0_scaffold16G07813 Striga asiatica HOM05D004942 ORTHO05D005687 5.1e-113 413.7 1257 29.3
Solyc05g012060.4 Solanum lycopersicum HOM05D004942 ORTHO05D005687 9.5e-112 409.5 1556 26.5
Os09g0101800 Oryza sativa ssp. japonica HOM05D004942 ORTHO05D005687 1.4e-110 405.6 1244 29.6
ATR0827G101 Amborella trichopoda HOM05D004942 ORTHO05D005687 1.5e-109 402.1 1572 26.5
Gohir.A12G159900 Gossypium hirsutum HOM05D004942 ORTHO05D005687 8.1e-103 379.8 920 31.4
Migut.A01205 Erythranthe guttata HOM05D004942 ORTHO05D005687 9.0e-102 376.3 1226 28.0
Migut.A01186 Erythranthe guttata HOM05D004942 ORTHO05D005687 1.3e-100 372.5 1221 27.8
Aa31LG7G8720 Aethionema arabicum HOM05D004942 ORTHO05D005687 7.8e-98 363.2 1255 27.6
Zm00001eb095700 Zea mays HOM05D004942 ORTHO05D005687 5.1e-97 360.5 1281 27.2
vmacro10440 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 7.3e-96 356.7 478 40.6
Gohir.D12G163200 Gossypium hirsutum HOM05D004942 ORTHO05D005687 6.2e-95 353.6 959 30.6
CAN.G707.24 Capsicum annuum HOM05D004942 ORTHO05D005687 9.0e-94 349.7 1475 26.0
HPP92_000888 Vanilla planifolia HOM05D004942 ORTHO05D005687 6.0e-90 337.0 1399 26.2
DCAR_023750 Daucus carota HOM05D004942 ORTHO05D005687 1.4e-86 325.9 1304 26.0
Lsat_1_v5_gn_4_11720 Lactuca sativa HOM05D004942 ORTHO05D005687 6.2e-79 300.4 1242 25.0
Atru.chr11.1595 Acer truncatum HOM05D004942 ORTHO05D005687 2.5e-72 278.5 644 35.7
Dinv34045 Davidia involucrata HOM05D004942 ORTHO05D005687 2.2e-71 275.4 907 30.0
MBI16_g47660_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 2.8e-71 275.0 345 42.3
Atru.chr11.1596 Acer truncatum HOM05D004942 ORTHO05D005687 4.1e-70 271.2 299 46.5
TPR.G31932 Trifolium pratense HOM05D004942 ORTHO05D005687 3.8e-68 264.6 449 35.2
TAR629G1003 Trochodendron aralioides HOM05D004942 ORTHO05D005687 1.0e-65 256.5 292 44.5
CSS0011617 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.7e-60 239.2 978 26.5
CSS0007829 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 2.2e-60 238.8 978 26.5
Actinidia28654 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.9e-59 235.7 445 33.5
unitig_26.g10284 Utricularia gibba HOM05D004942 ORTHO05D005687 1.9e-59 235.7 1230 25.4
TPR.G31934 Trifolium pratense HOM05D004942 ORTHO05D005687 3.2e-59 235.0 437 37.8
vmacro10441 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 9.4e-59 233.4 488 35.9
Gohir.A12G159850 Gossypium hirsutum HOM05D004942 ORTHO05D005687 3.6e-58 231.5 200 56.5
Actinidia28653 Actinidia chinensis HOM05D004942 ORTHO05D005687 4.7e-58 231.1 207 58.0
Actinidia27212 Actinidia chinensis HOM05D004942 ORTHO05D005687 6.1e-58 230.7 206 58.3
TAR629G1720 Trochodendron aralioides HOM05D004942 ORTHO05D005687 2.0e-56 225.7 196 57.7
CDE11G1026 Ceratophyllum demersum HOM05D004942 ORTHO05D005687 1.7e-44 186.0 255 35.3
Gohir.D12G163150 Gossypium hirsutum HOM05D004942 ORTHO05D005687 5.5e-43 181.0 104 75.0
MSTRG.7735 Avicennia marina HOM05D004942 ORTHO05D005687 3.0e-41 175.3 111 70.3
Gorai.012G127400 Gossypium raimondii HOM05D004942 ORTHO05D005687 8.8e-41 173.7 122 64.8
SEGI_21482 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 1.0e-33 150.2 129 53.5
SHI10798 Sapria himalayana HOM05D004942 ORTHO05D005687 2.2e-31 142.5 216 39.8
Mapoly0001s0391 Marchantia polymorpha HOM05D004942 ORTHO05D005687 7.0e-30 137.5 135 51.1
CSS0006420 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 2.0e-29 136.0 90 68.9
SMO269G0037 Selaginella moellendorffii HOM05D004942 ORTHO05D005687 2.5e-27 129.0 1214 20.3
MBI16_g47661_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 6.1e-26 124.4 82 62.2
GSVIVG01026037001 Vitis vinifera HOM05D004942 ORTHO05D005687 6.8e-25 120.9 152 42.8
CSS0033973 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 5.7e-24 117.9 76 68.4
CSS0004641 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 2.3e-20 105.9 162 41.4
SHI10799 Sapria himalayana HOM05D004942 ORTHO05D005687 2.8e-18 99.0 99 51.5
GSVIVG01015130001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.4e-14 86.7 68 63.2
Aqoxy4G01498 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 3.2e-14 85.5 80 56.2
MCO07G070 Micromonas commoda HOM05D004942 ORTHO05D005687 1.3e-12 80.1 125 30.4
GSVIVG01037061001 Vitis vinifera HOM05D004942 ORTHO05D005687 3.0e-12 79.0 67 59.7
GSVIVG01026043001 Vitis vinifera HOM05D004942 ORTHO05D005687 8.6e-12 77.4 67 58.2
SEGI_38362 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 2.3e-09 69.3 96 39.6
SHI10796 Sapria himalayana HOM05D004942 ORTHO05D005687 1.2e-08 67.0 129 31.0
Zm00001eb308480 Zea mays HOM05D000590 ORTHO05D005739 2.2e-07 62.8 139 30.2
CBR_g26527 Chara braunii HOM05D001007 ORTHO05D008005 3.7e-07 62.0 122 27.9
SHI10795 Sapria himalayana HOM05D004942 ORTHO05D005687 7.1e-06 57.8 42 61.9
TAR629G0168 Trochodendron aralioides HOM05D004942 ORTHO05D005687 9.2e-06 57.4 92 41.3


User provided reference genes

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