Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 3.4e-229 798.1 447 100.0
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 4.1e-182 641.7 390 94.6
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 1.9e-179 632.9 386 89.4
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 7.1e-142 508.1 390 74.9
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 2.7e-117 426.4 402 60.9
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 2.1e-114 416.8 403 59.6
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 1.5e-112 410.6 401 61.3
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 4.3e-107 392.5 426 57.3
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 2.1e-106 390.2 406 59.6
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 7.6e-104 381.7 431 54.1
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 9.3e-102 374.8 393 60.3
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 1.2e-101 374.4 408 57.6
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 1.6e-101 374.0 401 59.6
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 5.1e-100 369.0 422 56.4
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 6.9e-97 358.6 405 57.5
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 4.5e-96 355.9 418 55.7
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 4.5e-96 355.9 425 54.6
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 1.0e-95 354.8 426 54.9
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 1.0e-95 354.8 404 55.4
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 3.8e-95 352.8 425 54.8
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 8.5e-95 351.7 426 54.5
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.4e-94 350.9 405 57.5
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 2.1e-93 347.1 410 57.6
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 7.9e-93 345.1 393 54.2
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 1.0e-92 344.7 393 59.5
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 3.9e-92 342.8 406 58.1
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 5.1e-92 342.4 411 54.7
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 5.1e-92 342.4 411 54.7
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 3.7e-90 336.3 412 55.1
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 2.2e-87 327.0 458 52.0
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 2.9e-87 326.6 412 54.6
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 2.5e-86 323.6 384 52.9
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 3.2e-86 323.2 336 55.7
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 4.2e-86 322.8 389 54.2
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 1.2e-85 321.2 395 55.9
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.2e-85 321.2 389 54.0
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 2.3e-84 317.0 427 49.9
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 5.1e-84 315.8 415 51.3
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 1.5e-83 314.3 405 53.8
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 2.6e-83 313.5 394 50.5
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 3.1e-81 306.6 394 51.0
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 5.3e-81 305.8 430 51.2
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 2.0e-80 303.9 395 54.9
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 2.6e-80 303.5 406 56.7
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.5e-80 302.8 400 54.0
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.3e-79 301.2 401 53.4
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.1e-78 298.1 402 53.0
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 1.8e-76 290.8 392 55.1
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 1.3e-74 284.6 396 55.3
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 2.8e-74 283.5 365 53.7
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 8.2e-74 282.0 389 47.3
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 2.0e-72 277.3 367 45.8
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 3.5e-72 276.6 438 52.1
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 5.9e-72 275.8 397 54.7
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 2.3e-68 263.8 462 48.5
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 2.2e-66 257.3 382 49.2
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 1.1e-65 255.0 303 52.5
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 7.0e-65 252.3 369 46.9
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 5.5e-62 242.7 391 43.5
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 6.1e-61 239.2 247 56.3
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.7e-58 231.1 401 45.6
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.7e-58 231.1 401 45.6
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 2.8e-58 230.3 374 45.2
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 4.8e-58 229.6 385 40.3
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 8.3e-58 228.8 431 40.6
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.1e-57 228.4 403 47.1
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 1.4e-57 228.0 381 49.9
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.8e-57 227.6 395 40.0
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.1e-57 226.9 379 43.0
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 3.1e-57 226.9 383 47.8
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.1e-57 226.5 383 43.3
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.1e-57 226.5 383 43.3
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 9.1e-57 225.3 391 40.7
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.6e-56 224.6 399 39.1
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 2.0e-56 224.2 374 42.2
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 2.0e-56 224.2 374 42.2
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 7.7e-56 222.2 387 39.8
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 2.5e-54 217.2 277 50.9
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 3.6e-53 213.4 368 41.8
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 6.1e-53 212.6 381 41.7
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 3.0e-52 210.3 389 44.5
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 5.7e-51 206.1 390 44.4
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 2.8e-50 203.8 432 37.7
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 2.0e-48 197.6 366 43.4
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 3.5e-48 196.8 403 42.9
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 1.3e-47 194.9 366 42.6
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 2.3e-47 194.1 403 40.7
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 2.9e-47 193.7 395 39.5
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 6.6e-47 192.6 379 45.4
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 8.6e-47 192.2 467 41.1
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 1.1e-46 191.8 366 42.6
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 1.5e-46 191.4 389 42.4
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 4.7e-45 186.4 379 45.9
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 8.0e-45 185.7 470 40.9
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 1.0e-44 185.3 478 40.2
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 1.4e-44 184.9 398 43.5
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 2.3e-44 184.1 380 44.5
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 2.3e-44 184.1 380 44.5
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 1.1e-41 175.3 366 37.4
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.4e-41 174.9 393 40.2
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 1.6e-40 171.4 381 36.2
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 1.7e-39 167.9 381 38.3
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 3.6e-37 160.2 388 36.1
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.8e-36 157.9 410 35.6
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 2.6e-35 154.1 381 37.3
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 2.6e-35 154.1 381 37.3
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 7.5e-35 152.5 428 36.7
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 2.9e-34 150.6 389 38.0
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 4.9e-34 149.8 460 38.7
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 1.1e-33 148.7 371 33.7
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 1.1e-33 148.7 371 33.7
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 4.1e-33 146.7 408 36.8
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 9.2e-33 145.6 290 40.3
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 9.2e-33 145.6 376 34.8
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 4.6e-32 143.3 428 38.8
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 4.6e-32 143.3 372 39.8
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 1.3e-31 141.7 391 38.4
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 1.5e-30 138.3 109 66.1
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 4.3e-30 136.7 371 34.2
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 1.6e-29 134.8 418 38.5
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 3.6e-29 133.7 367 31.9
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 4.7e-29 133.3 284 38.0
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 6.2e-29 132.9 374 33.2
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 1.4e-28 131.7 433 35.1
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 1.8e-28 131.3 307 36.8
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 1.2e-27 128.6 433 34.4
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 1.3e-26 125.2 436 35.3
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 3.7e-26 123.6 404 34.2
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 8.3e-26 122.5 433 32.8
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 1.1e-25 122.1 434 35.7
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 1.9e-25 121.3 312 30.8
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 4.1e-25 120.2 410 38.5
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 4.1e-25 120.2 215 42.8
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 7.1e-25 119.4 433 32.6
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 7.1e-25 119.4 382 38.2
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 2.7e-24 117.5 431 32.3
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 4.6e-24 116.7 382 37.2
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 4.6e-24 116.7 391 38.9
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 1.3e-23 115.2 445 31.9
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 5.1e-23 113.2 228 48.7
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 1.1e-20 105.5 440 36.1
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 5.2e-20 103.2 218 40.8
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 2.6e-19 100.9 432 36.3
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 1.7e-18 98.2 186 34.4
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 1.4e-17 95.1 193 41.5
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 1.4e-17 95.1 303 31.7
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 6.0e-16 89.7 92 70.7
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 7.8e-16 89.4 405 28.4
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 6.9e-12 76.3 199 32.7
Haze_07821 Corylus avellana HOM05D004568 ORTHO05D005343 2.6e-11 74.3 53 75.5
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 8.4e-10 69.3 139 36.0
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 3.5e-08 63.9 145 41.4
Hma1.2p1_0337F.1_g129430 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 1.7e-07 61.6 159 32.7
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 8.7e-07 59.3 175 29.7
SGA_v2.0_scaffold14G06784 Striga asiatica HOM05D001314 ORTHO05D001165 1.9e-06 58.2 142 30.3
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 3.3e-06 57.4 186 28.5
Haze_13037 Corylus avellana HOM05D004568 ORTHO05D005343 7.3e-06 56.2 77 44.2


User provided reference genes

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