Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012175.2 Cucumis melo HOM05D006847 ORTHO05D008685 3.4e-239 831.2 414 100.0
CsaV3_5G033580 Cucumis sativus L. HOM05D006847 ORTHO05D008685 6.6e-227 790.4 414 94.9
ClCG05G023430 Citrullus lanatus HOM05D006847 ORTHO05D008685 9.6e-218 760.0 412 91.3
Sed0008138 Sechium edule HOM05D006847 ORTHO05D008685 2.4e-205 718.8 414 84.5
Sed0007808 Sechium edule HOM05D006847 ORTHO05D008685 1.6e-201 706.1 404 85.1
Dinv33999 Davidia involucrata HOM05D006847 ORTHO05D008685 2.5e-170 602.4 418 70.3
MD13G1054900 Malus domestica HOM05D006847 ORTHO05D008685 6.3e-169 597.8 417 68.3
Potri.008G113000 Populus trichocarpa HOM05D006847 ORTHO05D008685 2.4e-168 595.9 414 70.8
Ciclev10031661m.g Citrus clementina HOM05D006847 ORTHO05D008685 4.5e-167 591.7 416 69.2
COL.COLO4_27774 Corchorus olitorius HOM05D006847 ORTHO05D008685 5.9e-167 591.3 402 70.6
Gohir.A03G107200 Gossypium hirsutum HOM05D006847 ORTHO05D008685 1.3e-166 590.1 410 69.0
Potri.010G136300 Populus trichocarpa HOM05D006847 ORTHO05D008685 1.3e-166 590.1 399 71.7
Duzib268G0361 Durio zibethinus HOM05D006847 ORTHO05D008685 1.7e-166 589.7 418 68.7
Cfa008830 Carpinus fangiana HOM05D006847 ORTHO05D008685 1.4e-165 586.6 412 68.9
Lj6C772T8 Lonicera japonica HOM05D006847 ORTHO05D008685 7.2e-165 584.3 425 68.0
CiPaw.06G095800 Carya illinoinensis HOM05D006847 ORTHO05D008685 9.4e-165 583.9 410 68.3
Thecc.02G320200 Theobroma cacao HOM05D006847 ORTHO05D008685 9.4e-165 583.9 418 68.2
Haze_11844 Corylus avellana HOM05D006847 ORTHO05D008685 2.1e-164 582.8 414 68.6
Gorai.005G148200 Gossypium raimondii HOM05D006847 ORTHO05D008685 2.1e-164 582.8 410 67.8
Actinidia24040 Actinidia chinensis HOM05D006847 ORTHO05D008685 6.1e-164 581.3 411 69.8
GSVIVG01010124001 Vitis vinifera HOM05D006847 ORTHO05D008685 6.7e-163 577.8 414 68.4
TWI75G1304 Tripterygium wilfordii HOM05D006847 ORTHO05D008685 2.0e-162 576.2 405 69.6
MD16G1053800 Malus domestica HOM05D006847 ORTHO05D008685 3.3e-162 575.5 402 69.2
Atru.chr11.1527 Acer truncatum HOM05D006847 ORTHO05D008685 5.7e-162 574.7 415 68.2
SalBow2G2641 Salvia bowleyana HOM05D006847 ORTHO05D008685 2.8e-161 572.4 405 68.6
Eucgr.G02408 Eucalyptus grandis HOM05D006847 ORTHO05D008685 3.7e-161 572.0 427 65.3
Manes.14G092000 Manihot esculenta HOM05D006847 ORTHO05D008685 6.3e-161 571.2 403 69.0
TAR374G0132 Trochodendron aralioides HOM05D006847 ORTHO05D008685 6.3e-161 571.2 420 68.3
CANSAT64G2316 Cannabis sativa HOM05D006847 ORTHO05D008685 8.2e-161 570.9 412 67.5
Psat4g123400 Pisum sativum HOM05D006847 ORTHO05D008685 8.2e-161 570.9 407 68.3
CSS0010285 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 2.4e-160 569.3 401 68.6
FAN12G2539 Fragaria x ananassa HOM05D006847 ORTHO05D008685 3.1e-160 568.9 435 65.5
TAR622G1172 Trochodendron aralioides HOM05D006847 ORTHO05D008685 3.1e-160 568.9 417 68.1
FAN17G2474 Fragaria x ananassa HOM05D006847 ORTHO05D008685 7.0e-160 567.8 434 65.2
Lj3C1026T6 Lonicera japonica HOM05D006847 ORTHO05D008685 3.5e-159 565.5 419 66.6
Oeu001640.1 Olea europaea HOM05D006847 ORTHO05D008685 5.9e-159 564.7 419 66.6
MSTRG.7721 Avicennia marina HOM05D006847 ORTHO05D008685 1.3e-158 563.5 417 67.6
arahy.Tifrunner.gnm1.ann1.B51XMH Arachis hypogaea HOM05D006847 ORTHO05D008685 3.8e-158 562.0 394 70.6
Lsat_1_v5_gn_8_36700 Lactuca sativa HOM05D006847 ORTHO05D008685 1.1e-157 560.5 402 67.4
HanXRQChr08g0215061 Helianthus annuus HOM05D006847 ORTHO05D008685 2.5e-157 559.3 404 66.8
Migut.L01151 Erythranthe guttata HOM05D006847 ORTHO05D008685 3.2e-157 558.9 413 67.6
arahy.Tifrunner.gnm1.ann1.9XA9EY Arachis hypogaea HOM05D006847 ORTHO05D008685 1.6e-156 556.6 394 70.1
LjContig00408g0014580 Lotus japonicus HOM05D006847 ORTHO05D008685 4.7e-156 555.1 394 69.0
Aqoxy3G03766 Aquilegia oxysepala HOM05D006847 ORTHO05D008685 8.0e-156 554.3 415 65.1
ECA233G1196 Erigeron canadensis HOM05D006847 ORTHO05D008685 8.0e-156 554.3 411 65.5
Migut.N00803 Erythranthe guttata HOM05D006847 ORTHO05D008685 1.0e-155 553.9 410 66.6
PGR119G0337 Punica granatum HOM05D006847 ORTHO05D008685 1.4e-155 553.5 430 65.3
Cc11_g11380 Coffea canephora HOM05D006847 ORTHO05D008685 6.7e-155 551.2 421 63.2
Ca_22680_v3 Cicer arietinum L. HOM05D006847 ORTHO05D008685 1.5e-154 550.1 403 66.7
Gohir.D02G132300 Gossypium hirsutum HOM05D006847 ORTHO05D008685 2.0e-154 549.7 416 64.4
DCAR_023729 Daucus carota HOM05D006847 ORTHO05D008685 5.7e-154 548.1 407 66.3
Nitab4.5_0000259g0050 Nicotiana tabacum HOM05D006847 ORTHO05D008685 4.8e-153 545.0 403 64.5
Nitab4.5_0002309g0040 Nicotiana tabacum HOM05D006847 ORTHO05D008685 2.4e-152 542.7 415 64.1
MBI14_g08222_MAGBIO Magnolia biondii HOM05D006847 ORTHO05D008685 8.5e-150 534.3 402 62.7
Sopen01g032850 Solanum pennellii HOM05D006847 ORTHO05D008685 8.5e-150 534.3 405 64.0
Sopen05g006440 Solanum pennellii HOM05D006847 ORTHO05D008685 2.5e-149 532.7 417 63.3
Glyma.02G124600 Glycine max HOM05D006847 ORTHO05D008685 3.2e-149 532.3 402 65.7
Hma1.2p1_1348F.1_g277280 Hydrangea macrophylla HOM05D006847 ORTHO05D008685 9.4e-149 530.8 413 63.9
CAN.G869.31 Capsicum annuum HOM05D006847 ORTHO05D008685 1.6e-148 530.0 418 62.0
Oeu021813.1 Olea europaea HOM05D006847 ORTHO05D008685 1.6e-148 530.0 405 64.4
Ca_05192_v3 Cicer arietinum L. HOM05D006847 ORTHO05D008685 2.7e-148 529.3 405 64.7
Lj2g0006896 Lotus japonicus HOM05D006847 ORTHO05D008685 8.0e-148 527.7 410 63.2
PGSC0003DMG400019650 Solanum tuberosum HOM05D006847 ORTHO05D008685 3.0e-147 525.8 417 62.6
PGSC0003DMG400001803 Solanum tuberosum HOM05D006847 ORTHO05D008685 4.0e-147 525.4 414 62.1
Medtr0328s0040 Medicago truncatula HOM05D006847 ORTHO05D008685 7.5e-146 521.2 406 63.5
TPR.G20006 Trifolium pratense HOM05D006847 ORTHO05D008685 1.6e-143 513.5 405 63.7
Medtr8g065720 Medicago truncatula HOM05D006847 ORTHO05D008685 2.2e-142 509.6 412 62.1
FAN22G0943 Fragaria x ananassa HOM05D006847 ORTHO05D008685 6.5e-142 508.1 434 59.9
Aqoxy3G00572 Aquilegia oxysepala HOM05D006847 ORTHO05D008685 7.5e-138 494.6 406 60.1
ATR0691G250 Amborella trichopoda HOM05D006847 ORTHO05D008685 3.1e-136 489.2 402 58.7
HPP92_020537 Vanilla planifolia HOM05D006847 ORTHO05D008685 6.1e-132 474.9 401 56.1
RcHm_v2.0_Chr4g0437071 Rosa chinensis HOM05D006847 ORTHO05D008685 7.5e-122 441.4 324 66.7
Actinidia31921 Actinidia chinensis HOM05D006847 ORTHO05D008685 1.4e-115 420.6 299 68.6
Actinidia19898 Actinidia chinensis HOM05D006847 ORTHO05D008685 2.3e-115 419.9 291 69.4
HPP92_020469 Vanilla planifolia HOM05D006847 ORTHO05D008685 2.4e-112 409.8 394 51.3
Mapoly0024s0128 Marchantia polymorpha HOM05D006847 ORTHO05D008685 3.1e-107 392.9 431 47.1
HPP92_026164 Vanilla planifolia HOM05D006847 ORTHO05D008685 6.8e-107 391.7 380 51.1
Pp3c6_17060 Physcomitrium patens HOM05D006847 ORTHO05D008685 1.5e-106 390.6 420 47.9
FvH4_4g28930 Fragaria vesca HOM05D006847 ORTHO05D008685 4.4e-106 389.0 294 66.7
ATR0691G163 Amborella trichopoda HOM05D006847 ORTHO05D008685 9.9e-106 387.9 346 57.8
AagrBONN_evm.TU.Sc2ySwM_368.2780 Anthoceros agrestis HOM05D006847 ORTHO05D008685 2.9e-105 386.3 400 49.8
Pp3c5_12950 Physcomitrium patens HOM05D006847 ORTHO05D008685 1.1e-104 384.4 424 47.4
TPR.G29773 Trifolium pratense HOM05D006847 ORTHO05D008685 4.0e-99 365.9 310 62.3
Pp3c27_4530 Physcomitrium patens HOM05D006847 ORTHO05D008685 1.9e-96 357.1 439 42.6
Pp3c4_7760 Physcomitrium patens HOM05D006847 ORTHO05D008685 1.2e-90 337.8 444 41.9
Pp3c3_23290 Physcomitrium patens HOM05D006847 ORTHO05D008685 1.5e-85 320.9 457 39.6
Peaxi162Scf00188g00923 Petunia axillaris HOM05D006847 ORTHO05D008685 1.3e-76 291.2 259 57.9
Nn4g23575 Nelumbo nucifera HOM05D006847 ORTHO05D008685 2.4e-67 260.4 149 77.9
CSS0031083 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 2.9e-65 253.4 291 48.8
Cpa.g.c44692 Carica papaya HOM05D006847 ORTHO05D008685 6.5e-65 252.3 141 80.9
Psat2g097440 Pisum sativum HOM05D006847 ORTHO05D008685 1.6e-63 247.7 141 78.0
Medtr8g069545 Medicago truncatula HOM05D006847 ORTHO05D008685 1.8e-62 244.2 153 71.9
SMO198G0052 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 4.1e-59 233.0 166 60.2
Psat2g097480 Pisum sativum HOM05D006847 ORTHO05D008685 2.6e-58 230.3 250 50.8
SEGI_24845 Sequoiadendron giganteum HOM05D006847 ORTHO05D008685 2.2e-57 227.3 266 48.1
CSS0029748 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D008685 8.8e-54 215.3 256 49.2
Sabra10G0104800 Salix brachista HOM05D006847 ORTHO05D008685 2.5e-48 197.2 261 43.3
Solyc05g010640.3 Solanum lycopersicum HOM05D006847 ORTHO05D008685 2.6e-42 177.2 195 49.7
Nn4g23574 Nelumbo nucifera HOM05D006847 ORTHO05D008685 1.8e-38 164.5 111 73.0
Pp3c16_11950 Physcomitrium patens HOM05D006847 ORTHO05D008685 1.4e-35 154.8 140 51.4
Solyc05g010630.4 Solanum lycopersicum HOM05D006847 ORTHO05D008685 1.6e-34 151.4 105 66.7
CSS0043445 Camellia sinensis var. sinensis HOM05D006847 ORTHO05D000152 5.9e-34 149.4 148 50.7
AagrBONN_evm.TU.Sc2ySwM_117.3731 Anthoceros agrestis HOM05D006847 ORTHO05D008685 4.2e-32 143.3 116 55.2
arahy.Tifrunner.gnm1.ann1.UQ0TL8 Arachis hypogaea HOM05D006847 ORTHO05D008685 1.8e-22 111.3 94 58.5
Cre06.g263550 Chlamydomonas reinhardtii HOM05D006847 ORTHO05D008685 1.3e-20 105.1 187 34.8
Sabra10G0104900 Salix brachista HOM05D006847 ORTHO05D008685 6.3e-20 102.8 103 55.3
AagrBONN_evm.TU.Sc2ySwM_117.3730 Anthoceros agrestis HOM05D006847 ORTHO05D008685 8.3e-20 102.4 214 31.8
Actinidia31922 Actinidia chinensis HOM05D006847 ORTHO05D008685 5.4e-19 99.8 57 82.5
arahy.Tifrunner.gnm1.ann1.JA47JZ Arachis hypogaea HOM05D006847 ORTHO05D008685 7.0e-19 99.4 50 82.0
SMO143G0243 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 3.8e-17 93.6 105 41.9
SMO143G0192 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 5.0e-17 93.2 110 40.0
SMO186G0008 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 5.6e-16 89.7 110 40.0
MCO10G065 Micromonas commoda HOM05D006847 ORTHO05D008685 8.0e-15 85.9 141 38.3
SMO265G0021 Selaginella moellendorffii HOM05D006847 ORTHO05D008685 1.8e-14 84.7 110 39.1
CAN.G992.5 Capsicum annuum HOM05D006847 ORTHO05D008685 1.2e-13 82.0 50 76.0
Solyc01g081280.3 Solanum lycopersicum HOM05D006847 ORTHO05D008685 7.5e-13 79.3 51 66.7
Eucgr.K03198 Eucalyptus grandis HOM05D007024 ORTHO05D008865 3.0e-09 67.4 168 28.6
Manes.08G001700 Manihot esculenta HOM05D007024 ORTHO05D008865 3.0e-09 67.4 175 27.4
Potri.006G133100 Populus trichocarpa HOM05D007024 ORTHO05D008865 5.0e-09 66.6 168 27.4
Mapoly0013s0125 Marchantia polymorpha HOM05D016606 ORTHO05D018318 1.5e-08 65.1 187 25.7
Sabra06G0104600 Salix brachista HOM05D007024 ORTHO05D008865 1.9e-08 64.7 168 27.4
CARHR132350 Cardamine hirsuta HOM05D007024 ORTHO05D008865 2.5e-08 64.3 168 27.4
THA.LOC104805324 Tarenaya hassleriana HOM05D007024 ORTHO05D008865 2.5e-08 64.3 168 26.2
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 3.3e-08 63.9 168 27.4
Ciclev10013683m.g Citrus clementina HOM05D007024 ORTHO05D008865 5.6e-08 63.2 168 26.2
Thhalv10017137m.g Eutrema salsugineum HOM05D007024 ORTHO05D008865 5.6e-08 63.2 168 27.4
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 9.5e-08 62.4 168 26.2
Lj1g0023744 Lotus japonicus HOM05D007024 ORTHO05D008865 9.5e-08 62.4 168 25.6
CBR_g22374 Chara braunii HOM05D016606 ORTHO05D018318 3.6e-07 60.5 185 26.5
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 3.6e-07 60.5 182 24.7
AagrBONN_evm.TU.Sc2ySwM_228.4582 Anthoceros agrestis HOM05D016606 ORTHO05D018318 8.0e-07 59.3 163 26.4
Pp3c6_26630 Physcomitrium patens HOM05D016606 ORTHO05D018318 8.0e-07 59.3 163 28.8
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 1.8e-06 58.2 168 25.0
ECA238G1489 Erigeron canadensis HOM05D007024 ORTHO05D008865 4.0e-06 57.0 168 26.2
Lsat_1_v5_gn_2_109921 Lactuca sativa HOM05D007024 ORTHO05D008865 8.9e-06 55.8 162 24.7
Mapoly0154s0013 Marchantia polymorpha HOM05D007024 ORTHO05D008865 8.9e-06 55.8 170 25.9


User provided reference genes

Program Settings