Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 1.3e-64 249.6 127 100.0
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 4.9e-64 247.7 127 99.2
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 1.7e-61 239.2 140 90.0
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 1.7e-61 239.2 140 90.0
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 2.8e-59 231.9 127 91.3
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 9.9e-57 223.4 127 86.6
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 9.2e-55 216.9 123 87.0
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 4.6e-54 214.5 124 84.7
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 2.3e-53 212.2 129 83.7
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 3.9e-53 211.5 127 85.0
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 5.1e-53 211.1 127 84.3
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 6.6e-53 210.7 115 89.6
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 8.7e-53 210.3 125 84.0
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 1.1e-52 209.9 127 83.5
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 1.5e-52 209.5 122 82.0
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 1.5e-52 209.5 122 82.0
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 1.5e-52 209.5 122 82.0
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 2.5e-52 208.8 117 88.9
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 3.3e-52 208.4 126 81.7
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 3.3e-52 208.4 124 84.7
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 4.3e-52 208.0 129 82.2
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 7.3e-52 207.2 130 80.8
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 9.6e-52 206.8 127 81.1
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 1.2e-51 206.5 147 72.1
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 1.2e-51 206.5 147 72.1
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 2.1e-51 205.7 125 81.6
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 2.8e-51 205.3 124 83.1
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 4.7e-51 204.5 131 79.4
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 2.4e-50 202.2 122 83.6
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 5.2e-50 201.1 115 85.2
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 6.9e-50 200.7 128 78.1
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 1.2e-49 199.9 128 78.9
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 4.4e-49 198.0 124 80.6
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 9.9e-49 196.8 119 80.7
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 1.3e-48 196.4 126 77.0
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 2.2e-48 195.7 125 78.4
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 2.9e-48 195.3 128 75.0
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 1.4e-47 193.0 119 81.5
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 1.9e-47 192.6 123 78.0
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 3.2e-47 191.8 116 81.0
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 3.2e-47 191.8 125 74.4
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 3.2e-47 191.8 128 73.4
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 4.2e-47 191.4 124 76.6
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 4.2e-47 191.4 130 76.2
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 5.4e-47 191.0 124 78.2
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 9.3e-47 190.3 121 78.5
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 9.3e-47 190.3 114 80.7
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 9.3e-47 190.3 127 73.2
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 1.6e-46 189.5 115 81.7
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 1.6e-46 189.5 121 81.8
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 6.0e-46 187.6 121 77.7
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 1.0e-45 186.8 126 74.6
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 1.7e-45 186.0 126 76.2
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 2.3e-45 185.7 116 79.3
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 5.1e-45 184.5 116 78.4
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 6.6e-45 184.1 122 73.0
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 1.1e-44 183.3 128 75.0
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 1.9e-44 182.6 126 73.0
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 2.5e-44 182.2 116 77.6
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 2.5e-44 182.2 126 75.4
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 3.3e-44 181.8 129 72.1
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 3.3e-44 181.8 130 73.8
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 5.6e-44 181.0 116 78.4
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 7.3e-44 180.6 121 75.2
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 1.3e-43 179.9 127 73.2
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 3.6e-43 178.3 114 78.9
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 4.8e-43 177.9 113 77.9
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 8.1e-43 177.2 117 74.4
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 1.1e-42 176.8 140 67.9
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 1.4e-42 176.4 113 78.8
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 2.4e-42 175.6 132 69.7
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 4.0e-42 174.9 116 75.0
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 9.0e-42 173.7 113 77.9
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 9.0e-42 173.7 121 75.2
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 3.4e-41 171.8 120 75.0
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 5.8e-41 171.0 158 60.1
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.3e-40 169.9 115 76.5
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 2.2e-40 169.1 127 70.9
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 4.9e-40 167.9 122 69.7
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 1.1e-39 166.8 119 70.6
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.1e-39 166.8 115 75.7
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 1.4e-39 166.4 117 69.2
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 3.2e-39 165.2 119 70.6
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 5.4e-39 164.5 131 70.2
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 7.1e-39 164.1 130 66.9
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 7.1e-39 164.1 119 69.7
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 1.6e-38 162.9 119 68.9
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 2.1e-38 162.5 120 66.7
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 7.9e-38 160.6 113 75.2
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 5.1e-37 157.9 126 61.9
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 8.7e-37 157.1 179 51.4
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 1.1e-36 156.8 139 61.9
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 2.5e-36 155.6 107 72.0
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 7.4e-36 154.1 116 63.8
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 7.4e-36 154.1 115 63.5
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 1.8e-34 149.4 118 69.5
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 5.3e-34 147.9 118 64.4
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 9.0e-34 147.1 125 62.4
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 1.2e-33 146.7 114 62.3
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.5e-33 146.4 129 59.7
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 7.6e-33 144.1 118 60.2
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 2.2e-32 142.5 170 52.4
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 2.9e-32 142.1 90 74.4
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 3.8e-32 141.7 124 62.9
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 6.4e-32 141.0 85 81.2
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 2.4e-31 139.0 128 54.7
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 7.1e-31 137.5 132 59.1
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 1.2e-30 136.7 128 56.2
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 2.1e-30 136.0 112 65.2
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 2.7e-30 135.6 70 92.9
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 2.7e-30 135.6 129 57.4
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 7.9e-30 134.0 112 64.3
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 1.3e-29 133.3 88 71.6
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 3.0e-29 132.1 100 70.0
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 3.0e-29 132.1 129 55.8
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 8.7e-29 130.6 106 61.3
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 3.7e-27 125.2 69 87.0
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 4.8e-27 124.8 179 43.6
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 3.1e-26 122.1 119 55.5
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 2.6e-25 119.0 84 70.2
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 7.6e-25 117.5 70 77.1
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 7.6e-25 117.5 106 56.6
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.4e-23 113.2 112 58.9
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 1.8e-18 96.3 83 61.4
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 1.4e-15 86.7 51 80.4
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 2.3e-13 79.3 48 75.0
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 8.8e-13 77.4 49 73.5
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 1.5e-12 76.6 83 55.4
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 7.4e-12 74.3 65 52.3
SHI21665 Sapria himalayana HOM05D000105 ORTHO05D000023 3.4e-09 65.5 57 64.9
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 6.5e-08 61.2 66 53.0
Duzib251G0730 Durio zibethinus HOM05D006060 ORTHO05D007268 7.9e-06 54.3 60 51.7


User provided reference genes

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