Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 4.6e-277 957.2 472 100.0
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.0e-159 567.4 346 85.0
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.4e-127 460.7 346 71.4
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 2.8e-125 453.0 346 70.5
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 1.5e-121 440.7 346 69.9
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 7.5e-110 401.7 348 64.9
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 6.6e-90 335.5 308 59.4
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 6.6e-90 335.5 305 59.3
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 1.5e-89 334.3 310 59.7
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 6.2e-88 328.9 306 58.2
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.1e-87 328.2 314 58.9
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.8e-87 327.4 313 55.9
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 1.8e-87 327.4 316 55.4
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 1.2e-86 324.7 304 58.2
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.6e-86 323.6 318 54.7
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.6e-86 323.6 313 54.6
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 9.9e-86 321.6 331 55.3
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 3.8e-85 319.7 299 58.9
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 6.4e-85 318.9 291 58.4
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 8.4e-85 318.5 321 56.4
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 3.2e-84 316.6 314 55.1
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 7.1e-84 315.5 351 52.1
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 1.7e-82 310.8 291 57.0
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 2.3e-82 310.5 325 54.2
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 3.0e-82 310.1 293 57.0
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 6.6e-82 308.9 315 53.3
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.9e-81 307.4 320 53.8
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 4.3e-81 306.2 285 56.5
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 7.3e-81 305.4 310 53.2
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 7.3e-81 305.4 290 56.2
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 9.6e-81 305.1 292 55.5
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 1.3e-80 304.7 286 57.0
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 1.6e-80 304.3 300 54.3
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 3.6e-80 303.1 288 56.6
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 6.2e-80 302.4 287 55.7
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 8.1e-80 302.0 321 53.6
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 3.1e-79 300.1 286 54.5
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 4.0e-79 299.7 307 53.4
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 5.8e-78 295.8 332 50.9
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 5.8e-78 295.8 318 52.8
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.9e-77 293.5 303 51.8
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 2.9e-77 293.5 334 50.6
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 3.8e-77 293.1 290 55.5
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 3.8e-77 293.1 286 55.2
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 4.9e-77 292.7 285 54.0
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 6.4e-77 292.4 340 47.4
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 6.4e-77 292.4 339 49.0
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 1.4e-76 291.2 340 50.6
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 9.3e-76 288.5 338 48.8
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 1.2e-75 288.1 290 54.5
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 1.6e-75 287.7 326 51.5
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 2.7e-75 287.0 368 46.5
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 3.5e-75 286.6 310 51.6
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 4.6e-75 286.2 324 50.6
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 4.6e-75 286.2 289 53.6
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 6.0e-75 285.8 340 47.4
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 6.0e-75 285.8 368 46.5
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 6.0e-75 285.8 330 49.7
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 7.9e-75 285.4 287 53.7
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 7.9e-75 285.4 339 49.9
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 1.0e-74 285.0 334 48.5
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 1.3e-74 284.6 324 48.5
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 5.1e-74 282.7 291 51.9
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 1.5e-73 281.2 272 54.4
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 4.3e-73 279.6 307 49.5
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 2.8e-72 276.9 285 53.0
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 2.8e-72 276.9 333 48.9
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 4.8e-72 276.2 250 55.6
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 4.8e-72 276.2 249 56.2
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 6.2e-72 275.8 285 52.3
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 1.4e-71 274.6 250 57.6
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.4e-71 273.9 287 52.3
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 1.5e-70 271.2 250 54.8
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 2.6e-70 270.4 250 56.8
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 4.5e-70 269.6 285 49.1
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.7e-69 267.7 320 48.8
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 4.9e-69 266.2 286 51.0
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 4.9e-69 266.2 286 51.4
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 8.4e-69 265.4 286 51.4
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 1.1e-68 265.0 288 51.0
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 1.4e-68 264.6 286 51.4
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.4e-68 264.6 289 50.2
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.9e-68 264.2 310 47.7
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 3.2e-68 263.5 303 46.5
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 4.2e-68 263.1 286 49.0
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 7.1e-68 262.3 282 51.4
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 9.3e-68 261.9 289 51.2
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 9.3e-68 261.9 286 51.0
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 1.2e-67 261.5 237 59.1
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 2.7e-67 260.4 285 47.4
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 7.9e-67 258.8 289 49.8
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 1.8e-66 257.7 282 51.1
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 5.1e-66 256.1 288 49.3
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 6.7e-66 255.8 287 48.1
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 6.7e-66 255.8 287 48.1
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 6.7e-66 255.8 244 55.7
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.1e-65 255.0 317 46.4
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 1.5e-65 254.6 287 48.1
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 3.3e-65 253.4 287 48.8
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 5.6e-65 252.7 288 48.6
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 1.3e-64 251.5 288 48.6
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 2.1e-64 250.8 291 48.5
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 2.1e-64 250.8 291 48.5
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 3.7e-64 250.0 291 47.4
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 4.8e-64 249.6 288 47.6
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 6.2e-64 249.2 291 48.1
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 1.1e-63 248.4 309 46.0
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 3.1e-63 246.9 264 49.2
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 3.1e-63 246.9 250 51.2
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 5.3e-63 246.1 288 46.9
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 9.0e-63 245.4 251 53.0
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 2.0e-62 244.2 287 47.0
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 1.0e-61 241.9 308 44.8
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 3.8e-61 240.0 287 47.7
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 6.5e-61 239.2 256 50.0
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 6.5e-61 239.2 288 45.5
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 3.5e-59 233.4 250 48.0
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 3.3e-57 226.9 229 54.6
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 9.7e-57 225.3 269 48.3
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 3.1e-55 220.3 228 52.2
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 3.4e-54 216.9 282 43.6
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 1.7e-53 214.5 251 45.8
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 5.0e-53 213.0 298 43.6
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 5.0e-53 213.0 211 54.0
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 3.2e-52 210.3 288 43.1
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 3.0e-50 203.8 242 48.8
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 3.9e-50 203.4 246 48.4
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 7.4e-49 199.1 243 49.0
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 4.8e-48 196.4 233 47.6
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 1.1e-47 195.3 286 42.7
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.8e-47 194.5 230 49.1
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 2.4e-47 194.1 236 49.2
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 3.1e-47 193.7 229 49.3
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 9.1e-47 192.2 236 47.9
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 2.6e-46 190.7 233 47.2
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 2.6e-46 190.7 233 46.8
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 1.0e-42 178.7 153 58.8
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 1.1e-41 175.3 286 40.2
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 2.6e-41 174.1 134 63.4
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 4.4e-41 173.3 193 49.7
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 2.8e-40 170.6 203 48.8
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 7.0e-39 166.0 254 41.7
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 2.5e-36 157.5 201 44.3
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.6e-35 154.8 240 38.3
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 3.9e-34 150.2 112 62.5
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 6.7e-34 149.4 263 38.8
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 8.8e-34 149.1 170 47.6
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.2e-32 144.4 171 48.0
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 6.3e-32 142.9 141 53.2
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 7.0e-31 139.4 116 61.2
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 2.6e-30 137.5 114 58.8
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 2.2e-29 134.4 291 38.1
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 1.1e-28 132.1 114 59.6
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 1.9e-28 131.3 299 36.5
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 4.0e-26 123.6 169 40.8
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 6.8e-26 122.9 300 32.3
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 2.8e-24 117.5 260 30.4
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 4.1e-23 113.6 264 32.6
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.7e-21 108.2 215 34.9
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.5e-20 105.1 202 35.1
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 8.0e-19 99.4 83 54.2
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 3.0e-18 97.4 76 63.2
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 3.0e-18 97.4 77 62.3
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 3.4e-17 94.0 107 49.5
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 1.7e-16 91.7 74 59.5
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 2.0e-14 84.7 83 56.6
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 4.9e-08 63.5 77 46.8
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 6.3e-08 63.2 172 32.0
TPR.G39184 Trifolium pratense HOM05D001860 ORTHO05D004922 4.1e-07 60.5 57 50.9


User provided reference genes

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