Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012062.2 Cucumis melo HOM05D006025 ORTHO05D008547 1.6e-169 599.4 316 100.0
CsaV3_5G032300 Cucumis sativus L. HOM05D006025 ORTHO05D008547 2.1e-164 582.4 316 96.8
ClCG05G024630 Citrullus lanatus HOM05D006025 ORTHO05D008547 1.1e-152 543.5 313 91.1
Sed0022227 Sechium edule HOM05D006025 ORTHO05D008547 2.6e-138 495.7 316 84.8
Dinv34195 Davidia involucrata HOM05D006025 ORTHO05D008547 1.2e-108 397.1 292 74.3
Manes.05G096000 Manihot esculenta HOM05D006025 ORTHO05D008547 1.6e-108 396.7 316 69.9
MD16G1079500 Malus domestica HOM05D006025 ORTHO05D008547 8.0e-108 394.4 315 70.5
Prupe.1G267200 Prunus persica HOM05D006025 ORTHO05D008547 5.2e-107 391.7 318 69.8
QL03p065944 Quercus lobata HOM05D006025 ORTHO05D008547 2.6e-106 389.4 316 69.3
MD13G1079600 Malus domestica HOM05D006025 ORTHO05D008547 4.9e-105 385.2 321 69.2
CiPaw.05G140400 Carya illinoinensis HOM05D006025 ORTHO05D008547 4.1e-104 382.1 325 66.8
COL.COLO4_36182 Corchorus olitorius HOM05D006025 ORTHO05D008547 7.1e-104 381.3 318 69.5
Sabra10G0030400 Salix brachista HOM05D006025 ORTHO05D008547 1.6e-103 380.2 248 80.2
Ciclev10032129m.g Citrus clementina HOM05D006025 ORTHO05D008547 1.0e-102 377.5 311 68.2
Thecc.02G232800 Theobroma cacao HOM05D006025 ORTHO05D008547 1.0e-102 377.5 255 78.0
Actinidia31175 Actinidia chinensis HOM05D006025 ORTHO05D008547 1.7e-102 376.7 259 76.1
Cfa009042 Carpinus fangiana HOM05D006025 ORTHO05D008547 3.0e-102 375.9 318 67.6
Potri.010G034400 Populus trichocarpa HOM05D006025 ORTHO05D008547 1.1e-101 374.0 246 79.7
FAN12G1990 Fragaria x ananassa HOM05D006025 ORTHO05D008547 1.5e-101 373.6 245 80.0
PGR119G0173 Punica granatum HOM05D006025 ORTHO05D008547 1.5e-101 373.6 273 75.1
FvH4_4g32070 Fragaria vesca HOM05D006025 ORTHO05D008547 1.9e-101 373.2 249 79.1
GSVIVG01020079001 Vitis vinifera HOM05D006025 ORTHO05D008547 2.1e-100 369.8 316 65.8
FAN22G0508 Fragaria x ananassa HOM05D006025 ORTHO05D008547 4.7e-100 368.6 261 73.9
TWI18G0579 Tripterygium wilfordii HOM05D006025 ORTHO05D008547 8.1e-100 367.9 289 69.9
FAN07G0827 Fragaria x ananassa HOM05D006025 ORTHO05D008547 1.4e-99 367.1 284 69.7
Gorai.009G347000 Gossypium raimondii HOM05D006025 ORTHO05D008547 1.4e-99 367.1 319 66.1
Lj6A795T74 Lonicera japonica HOM05D006025 ORTHO05D008547 1.4e-99 367.1 302 67.5
RcHm_v2.0_Chr4g0440761 Rosa chinensis HOM05D006025 ORTHO05D008547 5.2e-99 365.2 311 65.9
Gohir.A05G321100 Gossypium hirsutum HOM05D006025 ORTHO05D008547 8.9e-99 364.4 319 65.2
CANSAT78G1034 Cannabis sativa HOM05D006025 ORTHO05D008547 5.8e-98 361.7 322 63.7
Gohir.D05G323300 Gossypium hirsutum HOM05D006025 ORTHO05D008547 2.9e-97 359.4 314 64.6
Thhalv10004613m.g Eutrema salsugineum HOM05D006025 ORTHO05D008547 8.3e-97 357.8 248 76.2
Atru.chr11.1861 Acer truncatum HOM05D006025 ORTHO05D008547 3.2e-96 355.9 321 64.2
Duzib268G1145 Durio zibethinus HOM05D006025 ORTHO05D008547 9.2e-96 354.4 296 66.9
THA.LOC104805137 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 9.2e-96 354.4 239 75.7
Nitab4.5_0000679g0100 Nicotiana tabacum HOM05D006025 ORTHO05D008547 1.2e-95 354.0 254 74.8
Rhsim12G0129700 Rhododendron simsii HOM05D006025 ORTHO05D008547 1.2e-95 354.0 322 64.9
BraA09t37996Z Brassica rapa HOM05D006025 ORTHO05D008547 2.7e-95 352.8 249 73.9
CAN.G27.7 Capsicum annuum HOM05D006025 ORTHO05D008547 2.7e-95 352.8 269 70.6
AL5G11850 Arabidopsis lyrata HOM05D006025 ORTHO05D008547 3.5e-95 352.4 316 63.3
A09p23920 Brassica napus HOM05D006025 ORTHO05D008547 4.6e-95 352.1 249 73.9
AT2G02590 Arabidopsis thaliana HOM05D006025 ORTHO05D008547 6.0e-95 351.7 253 73.5
Cc11_g13550 Coffea canephora HOM05D006025 ORTHO05D008547 6.0e-95 351.7 271 70.1
Carub.0005s0158 Capsella rubella HOM05D006025 ORTHO05D008547 1.3e-94 350.5 323 62.5
SalBow8G3437 Salvia bowleyana HOM05D006025 ORTHO05D008547 1.7e-94 350.1 257 72.4
TAR481G0011 Trochodendron aralioides HOM05D006025 ORTHO05D008547 1.7e-94 350.1 321 62.9
Hund25274 Selenicereus undatus HOM05D006025 ORTHO05D008547 2.3e-94 349.7 240 76.7
Medtr5g037600 Medicago truncatula HOM05D006025 ORTHO05D008547 5.1e-94 348.6 305 62.6
Sp2g13810 Schrenkiella parvula HOM05D006025 ORTHO05D008547 5.1e-94 348.6 318 63.5
BcaC06g31223 Brassica carinata HOM05D006025 ORTHO05D008547 6.6e-94 348.2 248 73.0
BolC7t43841H Brassica oleracea HOM05D006025 ORTHO05D008547 8.6e-94 347.8 230 77.4
Lalb_Chr05g0217521 Lupinus albus HOM05D006025 ORTHO05D008547 1.5e-93 347.1 295 64.4
DCAR_024490 Daucus carota HOM05D006025 ORTHO05D008547 7.3e-93 344.7 236 77.1
Glyma.01G040500 Glycine max HOM05D006025 ORTHO05D008547 9.6e-93 344.4 233 76.0
Migut.E00118 Erythranthe guttata HOM05D006025 ORTHO05D008547 1.2e-92 344.0 298 63.4
Phvul.002G080900 Phaseolus vulgaris HOM05D006025 ORTHO05D008547 2.1e-92 343.2 317 61.5
BcaC06g34048 Brassica carinata HOM05D006025 ORTHO05D008547 2.8e-92 342.8 302 63.2
arahy.Tifrunner.gnm1.ann1.V5YJYF Arachis hypogaea HOM05D006025 ORTHO05D008547 4.7e-92 342.0 237 74.7
EL10Ac6g13142 Beta vulgaris HOM05D006025 ORTHO05D008547 4.7e-92 342.0 329 59.9
A06p43550 Brassica napus HOM05D006025 ORTHO05D008547 4.7e-92 342.0 303 62.4
C07p33300 Brassica napus HOM05D006025 ORTHO05D008547 4.7e-92 342.0 302 63.2
C09p30780 Brassica napus HOM05D006025 ORTHO05D008547 4.7e-92 342.0 245 73.9
Lj2g0002167 Lotus japonicus HOM05D006025 ORTHO05D008547 4.7e-92 342.0 282 66.0
Aa31LG2G7560 Aethionema arabicum HOM05D006025 ORTHO05D008547 6.2e-92 341.7 241 73.4
Sc11g0001660 Simmondsia chinensis HOM05D006025 ORTHO05D008547 6.2e-92 341.7 305 63.3
arahy.Tifrunner.gnm1.ann1.1ZL8TB Arachis hypogaea HOM05D006025 ORTHO05D008547 1.1e-91 340.9 237 74.7
BraA06t27240Z Brassica rapa HOM05D006025 ORTHO05D008547 2.4e-91 339.7 303 62.0
VMungo1215G1908 Vigna mungo HOM05D006025 ORTHO05D008547 2.4e-91 339.7 225 75.6
BolC9t55941H Brassica oleracea HOM05D006025 ORTHO05D008547 5.2e-91 338.6 240 74.2
Ca_04692_v3 Cicer arietinum L. HOM05D006025 ORTHO05D008547 8.9e-91 337.8 304 62.2
BcaC04g21520 Brassica carinata HOM05D006025 ORTHO05D008547 1.2e-90 337.4 290 63.8
Psat2g115440 Pisum sativum HOM05D006025 ORTHO05D008547 1.5e-90 337.0 325 59.7
TPR.G26717 Trifolium pratense HOM05D006025 ORTHO05D008547 1.5e-90 337.0 321 60.4
Cpa.g.sc73.14 Carica papaya HOM05D006025 ORTHO05D008547 2.0e-90 336.7 245 71.8
vmacro16324 Vaccinium macrocarpon HOM05D006025 ORTHO05D008547 2.0e-90 336.7 365 57.3
Haze_12072 Corylus avellana HOM05D006025 ORTHO05D008547 2.6e-90 336.3 293 66.2
CARHR145110 Cardamine hirsuta HOM05D006025 ORTHO05D008547 2.9e-89 332.8 300 63.0
Migut.L01348 Erythranthe guttata HOM05D006025 ORTHO05D008547 2.9e-89 332.8 298 61.7
Nn4g23031 Nelumbo nucifera HOM05D006025 ORTHO05D008547 3.8e-89 332.4 321 59.8
Sopen05g002930 Solanum pennellii HOM05D006025 ORTHO05D008547 4.9e-89 332.0 313 61.0
Oeu044566.1 Olea europaea HOM05D006025 ORTHO05D008547 1.4e-88 330.5 298 63.8
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 2.1e-87 326.6 241 72.2
PGSC0003DMG400017619 Solanum tuberosum HOM05D006025 ORTHO05D008547 2.1e-87 326.6 309 60.5
Lsat_1_v5_gn_3_49700 Lactuca sativa HOM05D006025 ORTHO05D008547 6.6e-86 321.6 267 67.4
AUR62026262 Chenopodium quinoa HOM05D006025 ORTHO05D008547 1.1e-85 320.9 210 77.6
MBI04_g22196_MAGBIO Magnolia biondii HOM05D006025 ORTHO05D008547 1.5e-85 320.5 194 82.0
ATR0665G167 Amborella trichopoda HOM05D006025 ORTHO05D008547 3.3e-85 319.3 240 70.8
MSTRG.7831 Avicennia marina HOM05D006025 ORTHO05D008547 7.3e-85 318.2 295 61.7
CSS0050443 Camellia sinensis var. sinensis HOM05D006025 ORTHO05D008547 1.3e-84 317.4 198 82.8
HanXRQChr17g0544581 Helianthus annuus HOM05D006025 ORTHO05D008547 2.1e-84 316.6 322 58.4
HanXRQChr15g0478181 Helianthus annuus HOM05D006025 ORTHO05D008547 1.8e-83 313.5 332 55.4
Nitab4.5_0002969g0040 Nicotiana tabacum HOM05D006025 ORTHO05D008547 2.4e-83 313.2 252 67.1
PSO478G1322 Papaver somniferum HOM05D006025 ORTHO05D008547 5.3e-83 312.0 302 59.9
Aqoxy3G00786 Aquilegia oxysepala HOM05D006025 ORTHO05D008547 6.9e-83 311.6 325 56.9
BcaB07g30697 Brassica carinata HOM05D006025 ORTHO05D008547 9.0e-83 311.2 274 63.5
Eucgr.B02589 Eucalyptus grandis HOM05D006025 ORTHO05D008547 9.0e-83 311.2 244 70.1
Peaxi162Scf00209g00517 Petunia axillaris HOM05D006025 ORTHO05D008547 9.0e-83 311.2 250 67.2
AUR62026454 Chenopodium quinoa HOM05D006025 ORTHO05D008547 4.9e-81 305.4 210 76.7
ECA246G2177 Erigeron canadensis HOM05D006025 ORTHO05D008547 1.2e-79 300.8 200 77.5
unitig_62.g23684 Utricularia gibba HOM05D006025 ORTHO05D008547 1.2e-79 300.8 276 58.7
Os03g0800500 Oryza sativa ssp. japonica HOM05D006025 ORTHO05D008547 2.7e-79 299.7 211 72.5
SGA_v2.0_scaffold87G26972 Striga asiatica HOM05D006025 ORTHO05D008547 2.5e-77 293.1 323 55.4
SalBow2G1916 Salvia bowleyana HOM05D006025 ORTHO05D008547 2.0e-74 283.5 248 60.5
SEGI_16485 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 3.9e-70 269.2 251 57.0
Zm00001eb212770 Zea mays HOM05D006025 ORTHO05D008547 4.0e-67 259.2 197 67.5
AagrBONN_evm.TU.Sc2ySwM_117.678 Anthoceros agrestis HOM05D006025 ORTHO05D008547 9.3e-64 248.1 227 54.2
Mapoly0001s0092 Marchantia polymorpha HOM05D006025 ORTHO05D008547 1.0e-62 244.6 220 57.3
SMO147G0037 Selaginella moellendorffii HOM05D006025 ORTHO05D008547 2.3e-62 243.4 208 58.7
CBR_g39595 Chara braunii HOM05D006025 ORTHO05D008547 6.9e-59 231.9 256 48.8
Pp3c22_2360 Physcomitrium patens HOM05D006025 ORTHO05D008547 1.8e-54 217.2 198 55.1
HPP92_018837 Vanilla planifolia HOM05D006025 ORTHO05D008547 1.5e-53 214.2 145 73.8
CDE07G0470 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 1.1e-51 208.0 150 69.3
SEGI_34054 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 2.9e-33 146.7 110 67.3
Glyma.02G024100 Glycine max HOM05D006025 ORTHO05D008547 5.0e-33 146.0 201 50.2
CDE06G2488 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 3.6e-31 139.8 173 46.8
Solyc05g006965.1 Solanum lycopersicum HOM05D006025 ORTHO05D008547 4.4e-29 132.9 180 47.8
Hma1.2p1_0513F.1_g169540 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 3.4e-21 106.7 74 74.3
Hma1.2p1_0808F.1_g221580 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 4.4e-21 106.3 74 73.0
DCAR_001229 Daucus carota HOM05D006025 ORTHO05D008547 4.1e-11 73.2 50 76.0
Zm00001eb151370 Zea mays HOM05D006025 ORTHO05D443914 1.6e-07 61.2 56 64.3
Dinv16285 Davidia involucrata HOM05D000027 ORTHO05D000500 2.1e-07 60.8 108 43.5


User provided reference genes

Program Settings