Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 2.9e-279 964.5 470 100.0
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 2.3e-260 901.7 470 93.2
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 1.4e-252 875.9 470 90.6
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 3.7e-226 788.1 467 82.0
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 4.0e-188 661.8 465 69.0
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 2.6e-187 659.1 468 68.2
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 1.6e-184 649.8 468 67.7
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 4.6e-184 648.3 469 65.5
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 5.1e-183 644.8 464 66.4
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 1.1e-182 643.7 468 66.5
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 5.6e-182 641.3 470 65.3
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 7.3e-182 641.0 469 65.9
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 1.8e-180 636.3 467 64.9
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.8e-180 636.3 467 64.9
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 2.4e-180 636.0 470 64.9
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 4.0e-180 635.2 466 64.4
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 6.9e-180 634.4 467 64.7
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 9.0e-180 634.0 468 64.3
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 1.5e-179 633.3 470 64.5
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 3.4e-179 632.1 470 64.7
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 1.1e-177 627.1 451 66.3
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 1.1e-177 627.1 489 62.0
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.9e-177 626.3 467 64.7
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 3.2e-177 625.5 465 64.1
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 4.2e-177 625.2 466 64.8
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 5.4e-177 624.8 463 65.0
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 7.1e-177 624.4 470 64.9
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 9.3e-177 624.0 462 64.1
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 2.7e-176 622.5 468 63.7
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 4.6e-176 621.7 470 64.5
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 4.6e-176 621.7 466 65.0
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 1.8e-175 619.8 466 64.6
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.8e-175 619.8 466 63.7
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 3.0e-175 619.0 470 63.0
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 3.3e-174 615.5 466 63.9
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 4.3e-174 615.1 470 63.4
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 1.3e-173 613.6 473 62.4
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 8.1e-173 610.9 466 64.4
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 1.1e-172 610.5 468 61.1
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 1.5e-171 606.7 444 65.8
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 5.8e-171 604.7 470 62.8
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 7.6e-171 604.4 473 63.0
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.4e-169 600.1 473 60.9
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 2.5e-169 599.4 469 62.5
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 3.2e-169 599.0 437 64.5
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 9.3e-169 597.4 465 60.9
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 2.7e-168 595.9 468 61.5
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.0e-167 594.0 468 59.0
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 1.0e-167 594.0 460 61.5
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 1.8e-167 593.2 464 61.9
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 2.3e-167 592.8 468 60.0
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 2.3e-167 592.8 464 62.9
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 3.0e-167 592.4 469 61.0
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 5.1e-167 591.7 468 61.5
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 6.7e-167 591.3 468 59.2
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 8.7e-167 590.9 465 61.9
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 3.3e-166 589.0 465 61.7
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 2.1e-165 586.3 469 60.1
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 2.1e-165 586.3 466 61.2
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 6.2e-165 584.7 468 60.0
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 4.0e-164 582.0 416 66.1
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 9.0e-164 580.9 469 60.3
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 1.2e-163 580.5 472 58.9
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 1.5e-163 580.1 468 60.7
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 2.0e-163 579.7 474 59.7
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 5.8e-163 578.2 469 60.1
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 5.8e-163 578.2 469 60.1
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 7.6e-163 577.8 469 59.9
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 4.9e-162 575.1 469 59.1
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 6.5e-162 574.7 472 58.9
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 4.2e-161 572.0 472 58.5
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 4.2e-161 572.0 463 60.7
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 7.1e-161 571.2 468 59.0
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 3.5e-160 568.9 471 59.2
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 2.3e-159 566.2 469 58.8
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 8.7e-159 564.3 468 58.5
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 8.7e-159 564.3 438 63.0
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 2.5e-158 562.8 463 57.7
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 1.6e-157 560.1 460 57.2
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 2.2e-157 559.7 460 57.6
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 2.8e-157 559.3 460 57.4
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 2.4e-156 556.2 460 56.7
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 4.1e-156 555.4 460 57.0
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 5.3e-156 555.1 460 57.4
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 1.2e-155 553.9 468 58.5
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 1.5e-155 553.5 460 56.1
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 2.0e-155 553.1 469 57.8
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 1.7e-154 550.1 450 59.8
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 3.8e-154 548.9 439 59.5
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 1.4e-153 547.0 438 61.4
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 3.6e-152 542.3 469 56.5
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 1.0e-151 540.8 420 61.4
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 1.0e-151 540.8 468 57.5
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 6.7e-151 538.1 470 55.3
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 4.3e-150 535.4 470 54.3
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 1.3e-149 533.9 435 57.7
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 2.8e-149 532.7 438 57.3
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 4.8e-149 531.9 468 56.8
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 5.3e-148 528.5 464 53.7
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 2.0e-147 526.6 472 55.1
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 7.7e-147 524.6 431 56.8
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 2.1e-144 516.5 472 54.4
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 1.4e-143 513.8 449 56.1
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 3.0e-143 512.7 459 53.6
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 3.9e-143 512.3 468 54.7
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 6.7e-143 511.5 488 55.7
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 1.5e-142 510.4 485 52.0
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 5.7e-142 508.4 465 54.2
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 2.4e-140 503.1 495 52.5
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 1.2e-139 500.7 446 56.1
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 5.9e-139 498.4 425 57.9
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 4.2e-137 492.3 469 53.7
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 1.4e-132 477.2 468 54.7
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 5.9e-131 471.9 391 58.6
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 1.5e-129 467.2 343 65.9
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.2e-123 447.6 365 57.8
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 1.2e-123 447.6 355 59.7
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 2.7e-120 436.4 447 51.9
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 3.7e-117 426.0 509 45.4
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 1.6e-115 420.6 433 49.7
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 3.6e-112 409.5 503 44.9
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 2.1e-104 383.6 469 43.9
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 3.2e-92 343.2 406 45.1
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 1.9e-84 317.4 428 40.4
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 2.0e-78 297.4 235 63.0
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.3e-72 278.1 262 51.1
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 4.9e-69 266.2 197 65.5
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 8.4e-69 265.4 197 65.5
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 2.1e-67 260.8 190 64.2
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 2.9e-61 240.4 202 58.4
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 7.9e-59 232.3 225 53.8
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 1.2e-54 218.4 221 53.4
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 1.3e-53 214.9 148 64.9
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 1.9e-52 211.1 221 50.7
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 1.6e-48 198.0 420 36.0
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 5.7e-41 172.9 316 35.8
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 1.7e-37 161.4 110 62.7
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 1.4e-36 158.3 156 50.6
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 3.0e-34 150.6 181 46.4
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 6.5e-29 132.9 76 71.1
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 8.5e-29 132.5 113 54.9
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 4.2e-28 130.2 117 54.7
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 1.3e-24 118.6 132 47.7
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 2.2e-24 117.9 214 35.0
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 3.7e-24 117.1 83 67.5
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 6.3e-24 116.3 93 64.5
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 6.5e-21 106.3 76 61.8
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 1.5e-20 105.1 76 61.8
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 1.5e-20 105.1 214 34.1
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 2.1e-19 101.3 57 68.4
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 2.7e-19 100.9 145 39.3
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 6.1e-19 99.8 106 48.1
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 1.0e-18 99.0 118 50.8
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 2.3e-18 97.8 145 37.9
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 2.0e-17 94.7 79 55.7
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 2.6e-17 94.4 100 49.0
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 3.3e-17 94.0 90 54.4
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 4.4e-17 93.6 121 40.5
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 7.4e-17 92.8 63 66.7
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 1.4e-15 88.6 217 33.2
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 1.8e-15 88.2 99 48.5
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 9.1e-15 85.9 56 64.3
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 4.5e-14 83.6 56 62.5
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.0e-10 72.4 176 28.4
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.2e-09 68.9 182 28.0
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 4.4e-09 67.0 68 45.6
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.3e-08 65.5 176 27.3
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 2.8e-08 64.3 64 50.0
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 3.1e-07 60.8 53 50.9
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 2.7e-06 57.8 71 45.1
Nitab4.5_0002852g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 2.7e-06 57.8 47 55.3
A07p13570 Brassica napus HOM05D004011 ORTHO05D006437 5.9e-06 56.6 49 59.2


User provided reference genes

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