Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011973.2 Cucumis melo HOM05D008070 ORTHO05D001888 3.0e-85 318.5 169 100.0
CsaV3_5G031330 Cucumis sativus L. HOM05D008070 ORTHO05D001888 2.8e-38 162.5 169 53.3
MELO3C011974.2 Cucumis melo HOM05D008070 ORTHO05D001888 9.2e-34 147.5 169 49.1
Sed0024894 Sechium edule HOM05D008070 ORTHO05D001888 8.6e-32 141.0 161 48.4
Sed0022116 Sechium edule HOM05D008070 ORTHO05D001888 1.2e-28 130.6 167 44.9
Cfa009190 Carpinus fangiana HOM05D008070 ORTHO05D001888 7.0e-26 121.3 168 42.3
CiPaw.05G184900 Carya illinoinensis HOM05D008070 ORTHO05D001888 2.3e-24 116.3 161 39.8
Haze_12224 Corylus avellana HOM05D008070 ORTHO05D001888 1.9e-23 113.2 180 37.2
Sed0022593 Sechium edule HOM05D008070 ORTHO05D001888 2.3e-21 106.3 138 40.6
Manes.12G025200 Manihot esculenta HOM05D008070 ORTHO05D001888 1.2e-20 104.0 172 36.6
Sed0000802 Sechium edule HOM05D008070 ORTHO05D001888 4.4e-20 102.1 134 42.5
ClCG08G017790 Citrullus lanatus HOM05D008070 ORTHO05D001888 7.5e-20 101.3 162 38.9
QL03p058723 Quercus lobata HOM05D010056 ORTHO05D001888 1.4e-18 97.1 174 33.9
Duzib251G0841 Durio zibethinus HOM05D008070 ORTHO05D001888 5.4e-18 95.1 173 37.6
Manes.13G026900 Manihot esculenta HOM05D008070 ORTHO05D001888 7.0e-18 94.7 166 35.5
MELO3C010682.2 Cucumis melo HOM05D008070 ORTHO05D001888 1.2e-17 94.0 138 37.0
CsaV3_2G024840 Cucumis sativus L. HOM05D008070 ORTHO05D001888 2.1e-17 93.2 138 36.2
TWI75G1444 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 6.0e-17 91.7 171 35.7
CANSAT01G1404 Cannabis sativa HOM05D008070 ORTHO05D001888 1.7e-16 90.1 179 34.6
Cpa.g.sc69.89 Carica papaya HOM05D008070 ORTHO05D001888 8.6e-16 87.8 159 32.7
Prupe.1G249100 Prunus persica HOM05D008070 ORTHO05D001888 2.5e-15 86.3 166 35.5
Atru.chr11.2085 Acer truncatum HOM05D008070 ORTHO05D001888 3.3e-15 85.9 164 35.4
Atru.chr11.2086 Acer truncatum HOM05D008070 ORTHO05D001888 3.3e-15 85.9 164 35.4
CiPaw.06G069400 Carya illinoinensis HOM05D008070 ORTHO05D001888 3.3e-15 85.9 172 34.3
TWI36G0098 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 7.3e-15 84.7 172 36.0
THA.LOC104822159 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 1.6e-14 83.6 163 35.6
THA.LOC104822979 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 4.7e-14 82.0 163 36.2
Sp5g25690 Schrenkiella parvula HOM05D008070 ORTHO05D001888 6.2e-14 81.6 141 37.6
Carub.0002s1726 Capsella rubella HOM05D008070 ORTHO05D001888 8.1e-14 81.3 169 36.7
Thhalv10019249m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 8.1e-14 81.3 159 35.8
AL2G29930 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 2.3e-13 79.7 168 34.5
CARHR063750 Cardamine hirsuta HOM05D008070 ORTHO05D001888 3.1e-13 79.3 167 35.3
CARHR023800 Cardamine hirsuta HOM05D008070 ORTHO05D001888 4.0e-13 79.0 172 30.8
Carub.0001s2294 Capsella rubella HOM05D008070 ORTHO05D001888 8.9e-13 77.8 171 32.2
AT1G70540 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 1.2e-12 77.4 168 33.3
QL03p058730 Quercus lobata HOM05D008070 ORTHO05D001888 1.2e-12 77.4 151 37.1
BraA02t06717Z Brassica rapa HOM05D008070 ORTHO05D001888 2.6e-12 76.3 159 33.3
BcaC03g15202 Brassica carinata HOM05D008070 ORTHO05D001888 4.4e-12 75.5 159 33.3
A02p16620 Brassica napus HOM05D008070 ORTHO05D001888 4.4e-12 75.5 155 34.8
C02p27870 Brassica napus HOM05D008070 ORTHO05D001888 4.4e-12 75.5 159 33.3
BolC2t08833H Brassica oleracea HOM05D008070 ORTHO05D001888 4.4e-12 75.5 159 33.3
COL.COLO4_24233 Corchorus olitorius HOM05D008070 ORTHO05D001888 4.4e-12 75.5 176 34.7
AL1G37150 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 7.5e-12 74.7 158 32.3
QL04p082804 Quercus lobata HOM05D010056 ORTHO05D001888 9.9e-12 74.3 167 29.9
AT1G23350 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 1.3e-11 73.9 157 31.8
QL04p082907 Quercus lobata HOM05D010056 ORTHO05D001888 2.2e-11 73.2 160 30.6
TAR629G1731 Trochodendron aralioides HOM05D008070 ORTHO05D001888 6.4e-11 71.6 179 32.4
Ciclev10032926m.g Citrus clementina HOM05D008070 ORTHO05D001888 1.1e-10 70.9 174 29.9
Aa31LG4G10410 Aethionema arabicum HOM05D008070 ORTHO05D001888 3.2e-10 69.3 156 30.1
CARHR010990 Cardamine hirsuta HOM05D009121 ORTHO05D001888 3.2e-10 69.3 157 28.7
Thhalv10008931m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 3.2e-10 69.3 138 31.2
BcaC05g26248 Brassica carinata HOM05D008070 ORTHO05D001888 4.1e-10 68.9 138 34.1
C05p22620 Brassica napus HOM05D008070 ORTHO05D001888 4.1e-10 68.9 138 34.1
BolC5t30961H Brassica oleracea HOM05D008070 ORTHO05D001888 4.1e-10 68.9 138 34.1
BcaB07g32331 Brassica carinata HOM05D008070 ORTHO05D001888 7.1e-10 68.2 167 31.7
Eucgr.H02532 Eucalyptus grandis HOM05D008070 ORTHO05D001888 9.2e-10 67.8 168 31.0
Sp1g20800 Schrenkiella parvula HOM05D008070 ORTHO05D001888 9.2e-10 67.8 158 31.0
Aa31LG7G7380 Aethionema arabicum HOM05D008070 ORTHO05D001888 6.0e-09 65.1 138 31.9
Eucgr.H01005 Eucalyptus grandis HOM05D005742 ORTHO05D001888 7.8e-09 64.7 146 32.2
TAR622G1131 Trochodendron aralioides HOM05D008070 ORTHO05D001888 7.8e-09 64.7 174 29.9
Thecc.02G256200 Theobroma cacao HOM05D018853 ORTHO05D020509 1.7e-08 63.5 170 33.5
Duzib248G0935 Durio zibethinus HOM05D008070 ORTHO05D001888 6.6e-08 61.6 171 32.2
BraA09t39622Z Brassica rapa HOM05D008070 ORTHO05D001888 1.1e-07 60.8 109 35.8
A09p41290 Brassica napus HOM05D008070 ORTHO05D001888 1.5e-07 60.5 109 35.8
MD03G1299200 Malus domestica HOM05D005742 ORTHO05D001888 2.5e-07 59.7 144 29.9
BraA07t29145Z Brassica rapa HOM05D008070 ORTHO05D001888 3.3e-07 59.3 167 27.5
BcaB03g14151 Brassica carinata HOM05D008070 ORTHO05D001888 4.3e-07 58.9 165 26.7
QL03p058712 Quercus lobata HOM05D008070 ORTHO05D001888 4.3e-07 58.9 107 30.8
QL05p047683 Quercus lobata HOM05D010056 ORTHO05D001888 4.3e-07 58.9 167 25.7
QL05p047697 Quercus lobata HOM05D010056 ORTHO05D001888 4.3e-07 58.9 167 26.3
QL06p011856 Quercus lobata HOM05D005742 ORTHO05D001888 5.6e-07 58.5 150 30.0
BcaC06g35034 Brassica carinata HOM05D008070 ORTHO05D001888 7.3e-07 58.2 165 26.1
BolC7t42570H Brassica oleracea HOM05D008070 ORTHO05D001888 7.3e-07 58.2 165 26.1
A08p28210 Brassica napus HOM05D008070 ORTHO05D001888 1.2e-06 57.4 140 27.9
BraA08t34752Z Brassica rapa HOM05D008070 ORTHO05D001888 1.2e-06 57.4 140 27.9
CDE07G0112 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 1.2e-06 57.4 152 31.6
BcaB03g11935 Brassica carinata HOM05D008070 ORTHO05D001888 1.6e-06 57.0 160 27.5
CSS0018735 Camellia sinensis var. sinensis HOM05D009745 ORTHO05D011350 1.6e-06 57.0 173 26.0
Cfa015324 Carpinus fangiana HOM05D005742 ORTHO05D001888 1.6e-06 57.0 145 29.7
MBI19_g03227_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 2.1e-06 56.6 161 29.8
Haze_01291 Corylus avellana HOM05D005742 ORTHO05D001888 2.8e-06 56.2 144 29.2
PSO478G3987 Papaver somniferum HOM05D020914 ORTHO05D001888 2.8e-06 56.2 169 30.2
Rhsim02G0004500 Rhododendron simsii HOM05D005742 ORTHO05D001888 2.8e-06 56.2 149 30.2
Sed0009222 Sechium edule HOM05D005742 ORTHO05D001888 2.8e-06 56.2 148 27.7
TAR362G0759 Trochodendron aralioides HOM05D005742 ORTHO05D001888 2.8e-06 56.2 149 30.9
PSO017G3787 Papaver somniferum HOM05D020914 ORTHO05D023578 3.6e-06 55.8 169 29.6
QL04p087995 Quercus lobata HOM05D010056 ORTHO05D001888 4.7e-06 55.5 168 28.6
Atru.chr4.3013 Acer truncatum HOM05D005742 ORTHO05D001888 6.2e-06 55.1 111 29.7
BcaC07g39196 Brassica carinata HOM05D008070 ORTHO05D001888 6.2e-06 55.1 160 26.9
BolC8t49825H Brassica oleracea HOM05D008070 ORTHO05D001888 6.2e-06 55.1 160 26.9
C08p21860 Brassica napus HOM05D008070 ORTHO05D001888 8.1e-06 54.7 160 26.9
Prupe.1G118800 Prunus persica HOM05D005742 ORTHO05D001888 8.1e-06 54.7 152 29.6


User provided reference genes

Program Settings