Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 0.0e+00 1193.7 619 100.0
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 0.0e+00 1109.4 619 93.5
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 2.2e-295 1018.5 622 86.8
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 7.3e-254 880.6 645 74.3
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 1.7e-130 470.7 651 46.5
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 2.0e-126 457.2 678 44.5
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 2.7e-123 446.8 653 44.1
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 1.5e-121 441.0 671 44.3
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 3.3e-121 439.9 714 43.7
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 7.3e-121 438.7 651 43.6
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 6.8e-119 432.2 647 44.7
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 1.5e-118 431.0 660 45.6
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 2.0e-118 430.6 644 44.7
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.6e-118 430.3 701 42.4
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 2.6e-118 430.3 686 42.0
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 2.6e-118 430.3 682 42.4
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 5.8e-118 429.1 644 43.9
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 1.7e-117 427.6 647 43.9
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 6.4e-117 425.6 711 42.8
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.1e-116 424.9 706 42.1
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 3.2e-116 423.3 671 44.0
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 5.4e-116 422.5 649 43.6
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 9.2e-116 421.8 685 42.6
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 2.7e-115 420.2 676 42.5
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.0e-114 418.3 641 44.1
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 7.3e-113 412.1 702 41.6
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 1.2e-112 411.4 702 41.5
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 2.1e-112 410.6 670 43.0
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 6.2e-112 409.1 651 44.2
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 3.4e-110 403.3 574 48.8
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 5.8e-110 402.5 659 42.8
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 9.9e-110 401.7 677 42.2
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 3.2e-108 396.7 663 40.4
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 2.1e-107 394.0 720 39.2
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 3.3e-105 386.7 635 42.2
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.6e-104 384.4 705 39.9
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 5.2e-103 379.4 655 41.1
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 9.0e-103 378.6 673 39.5
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 9.0e-103 378.6 662 41.4
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 3.4e-102 376.7 678 40.6
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 7.6e-102 375.6 661 41.3
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 2.2e-101 374.0 669 40.8
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 5.4e-100 369.4 707 39.2
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 9.3e-100 368.6 721 38.6
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 9.3e-100 368.6 594 42.1
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 1.2e-99 368.2 673 39.5
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 6.0e-99 365.9 717 38.6
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 7.8e-99 365.5 695 39.0
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 2.3e-98 364.0 650 41.1
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 4.8e-96 356.3 674 39.0
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.2e-94 351.7 665 37.3
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 5.8e-94 349.4 637 40.0
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 3.8e-93 346.7 696 36.9
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 1.9e-92 344.4 652 39.3
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 4.2e-92 343.2 647 39.9
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 9.3e-92 342.0 645 39.8
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 1.6e-91 341.3 652 38.7
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 2.7e-91 340.5 674 38.6
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 3.0e-90 337.0 623 40.3
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 1.9e-89 334.3 658 39.7
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 4.3e-89 333.2 650 38.2
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 9.6e-89 332.0 739 35.7
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 1.3e-88 331.6 723 37.5
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.1e-88 330.9 718 35.9
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 3.7e-88 330.1 713 36.6
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 4.0e-87 326.6 807 34.0
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 3.4e-86 323.6 658 37.8
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 4.5e-86 323.2 748 35.6
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 5.8e-86 322.8 648 39.2
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 9.9e-86 322.0 676 36.8
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.3e-85 321.6 761 33.1
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 6.4e-85 319.3 663 36.3
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 1.9e-84 317.8 685 37.4
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 3.2e-84 317.0 744 34.9
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 7.1e-84 315.8 653 36.9
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 9.3e-84 315.5 676 37.7
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 1.2e-83 315.1 646 38.5
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 4.6e-83 313.2 728 34.6
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 7.9e-83 312.4 652 36.5
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 5.1e-82 309.7 812 31.4
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 8.7e-82 308.9 646 36.4
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 4.3e-81 306.6 802 32.0
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.1e-80 304.3 651 37.3
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 6.2e-80 302.8 687 36.5
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 1.8e-79 301.2 655 36.5
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 3.1e-79 300.4 580 38.3
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 4.0e-79 300.1 668 36.2
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 2.0e-78 297.7 691 34.3
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 1.4e-76 291.6 651 35.5
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 2.5e-76 290.8 669 36.3
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 5.5e-76 289.7 718 33.6
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 2.7e-75 287.3 655 36.2
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 4.6e-75 286.6 200 74.0
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 3.9e-74 283.5 674 34.3
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 4.8e-72 276.6 551 37.4
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.1e-71 275.4 698 33.1
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 6.9e-71 272.7 663 34.8
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 6.9e-71 272.7 858 29.1
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 2.6e-70 270.8 861 28.8
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 3.4e-70 270.4 747 31.7
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 7.6e-70 269.2 758 32.1
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 6.5e-69 266.2 633 34.4
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 4.2e-68 263.5 637 34.9
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 9.3e-68 262.3 892 28.4
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 7.9e-67 259.2 822 29.0
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 3.9e-66 256.9 532 37.2
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 1.1e-65 255.4 632 34.5
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.3e-64 251.9 623 33.2
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 4.8e-64 250.0 633 32.2
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 5.3e-63 246.5 600 34.0
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 3.4e-62 243.8 629 34.0
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 3.4e-62 243.8 630 34.9
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 5.0e-61 240.0 915 27.9
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 1.4e-58 231.9 696 33.2
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 3.0e-58 230.7 686 30.9
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 6.7e-58 229.6 695 31.2
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 3.3e-57 227.3 668 31.7
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 1.5e-54 218.4 676 30.2
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 6.5e-53 213.0 621 30.4
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 8.5e-53 212.6 564 32.3
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.6e-46 191.0 816 27.1
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 9.1e-39 166.0 640 29.2
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.0e-37 162.5 631 30.1
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 3.8e-37 160.6 221 39.8
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 5.0e-37 160.2 263 38.4
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 2.5e-36 157.9 640 27.5
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 2.5e-36 157.9 847 26.0
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 9.4e-36 156.0 529 31.2
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 2.7e-35 154.5 299 40.8
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 4.7e-35 153.7 309 39.8
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 8.0e-35 152.9 721 27.9
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 4.0e-34 150.6 593 29.3
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 5.2e-34 150.2 303 39.6
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.2e-33 149.1 173 49.1
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 1.8e-31 141.7 412 34.2
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 4.5e-30 137.1 168 47.6
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 5.5e-28 130.2 449 30.7
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 9.5e-28 129.4 235 38.7
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 1.2e-27 129.0 458 30.3
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 6.1e-27 126.7 447 31.3
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 3.7e-24 117.5 175 41.7
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 2.4e-23 114.8 342 35.4
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 7.0e-23 113.2 208 35.6
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 1.2e-22 112.5 341 34.9
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 8.0e-19 99.8 353 31.7
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 3.4e-17 94.4 670 24.5
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 3.4e-17 94.4 141 38.3
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 3.4e-17 94.4 97 50.5
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 3.7e-16 90.9 334 31.7
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 7.0e-15 86.7 111 46.8
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 1.2e-14 85.9 183 37.7
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 1.6e-14 85.5 87 51.7
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 2.5e-12 78.2 323 28.8
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 4.3e-12 77.4 598 24.6
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 1.2e-11 75.9 87 47.1
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 3.6e-11 74.3 91 42.9
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 3.6e-11 74.3 517 24.6
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 8.0e-11 73.2 86 41.9
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.3e-10 71.6 131 36.6
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 8.9e-10 69.7 139 35.3
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 1.2e-09 69.3 355 29.0
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 5.8e-09 67.0 90 46.7
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.3e-08 65.9 78 50.0
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 1.4e-07 62.4 91 42.9
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 1.6e-06 58.9 60 46.7


User provided reference genes

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