Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 0.0e+00 1458.0 801 100.0
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 0.0e+00 1082.8 665 90.8
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 1.9e-294 1015.8 664 85.8
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 3.2e-209 732.6 626 70.6
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 1.8e-167 594.0 673 55.6
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 4.2e-161 572.8 659 53.6
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 4.2e-161 572.8 671 53.5
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 3.5e-160 569.7 675 52.6
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 7.9e-160 568.5 668 54.0
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 9.6e-158 561.6 663 52.8
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 1.8e-156 557.4 674 50.6
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 2.2e-154 550.4 678 51.3
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 2.7e-152 543.5 674 50.1
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 7.9e-152 542.0 659 51.0
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 8.2e-149 531.9 684 49.7
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 1.6e-144 517.7 677 50.8
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 7.9e-144 515.4 670 46.6
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 6.7e-143 512.3 676 48.5
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 5.7e-142 509.2 669 45.9
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 4.8e-141 506.1 676 46.4
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 1.8e-140 504.2 679 47.3
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 2.4e-140 503.8 654 49.7
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 5.3e-140 502.7 678 46.9
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 9.1e-140 501.9 658 50.6
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 2.9e-138 496.9 682 51.0
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 5.0e-138 496.1 644 49.2
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.3e-135 487.3 648 48.3
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 2.8e-133 480.3 679 45.4
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 2.8e-133 480.3 653 48.2
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.8e-132 477.6 653 47.9
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 4.1e-132 476.5 664 48.0
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 9.1e-132 475.3 687 46.1
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 1.2e-131 474.9 666 48.0
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 3.5e-131 473.4 674 45.4
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 1.0e-130 471.9 685 46.9
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 1.0e-130 471.9 669 45.9
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 1.2e-128 464.9 646 47.5
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 3.6e-128 463.4 656 46.3
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 3.0e-127 460.3 636 43.7
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 5.2e-127 459.5 601 50.6
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 6.7e-127 459.1 683 44.7
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 5.7e-126 456.1 674 44.1
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 1.8e-124 451.1 692 42.3
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.4e-124 450.7 658 43.8
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 2.5e-121 440.7 658 46.5
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 4.2e-121 439.9 676 44.8
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 2.7e-120 437.2 654 45.0
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 4.7e-120 436.4 653 45.8
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 8.0e-120 435.6 566 49.5
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 1.8e-119 434.5 662 45.6
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 1.8e-119 434.5 640 44.8
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 5.2e-119 433.0 693 42.0
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 6.8e-119 432.6 655 46.3
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 2.6e-118 430.6 673 45.2
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 3.4e-118 430.3 625 42.9
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 7.5e-118 429.1 680 43.5
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 7.7e-115 419.1 664 43.4
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 6.5e-114 416.0 677 42.5
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 3.2e-113 413.7 670 43.4
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 6.1e-112 409.5 675 43.0
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 6.8e-111 406.0 653 43.8
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 7.5e-110 402.5 494 48.8
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 2.4e-108 397.5 692 43.2
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.3e-106 391.0 672 40.8
Aqoxy7G03799 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 6.6e-106 389.4 682 44.7
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 8.6e-106 389.0 654 43.3
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 1.9e-105 387.9 646 41.6
ATR0824G009 Amborella trichopoda HOM05D003570 ORTHO05D004207 3.3e-105 387.1 650 42.3
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 7.3e-105 386.0 662 43.2
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 6.8e-103 379.4 738 40.9
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 1.7e-101 374.8 645 42.2
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.8e-100 371.3 653 39.8
AUR62005511 Chenopodium quinoa HOM05D003570 ORTHO05D004207 3.2e-100 370.5 688 40.1
Sabra08G0139700 Salix brachista HOM05D003570 ORTHO05D004207 4.6e-99 366.7 338 58.0
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 3.0e-98 364.0 678 37.8
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 3.3e-97 360.5 662 40.8
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 3.3e-97 360.5 675 41.0
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 4.3e-97 360.1 691 39.9
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 7.3e-97 359.4 575 43.5
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 9.5e-97 359.0 667 39.1
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 9.5e-97 359.0 661 38.6
SHI04269 Sapria himalayana HOM05D003570 ORTHO05D004207 4.0e-95 353.6 557 42.0
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 5.2e-95 353.2 680 40.4
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 2.0e-94 351.3 676 39.5
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 2.0e-94 351.3 669 41.6
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 2.2e-93 347.8 684 37.3
EL10As2g23162 Beta vulgaris HOM05D003570 ORTHO05D004207 1.6e-91 341.7 506 46.2
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 1.5e-89 335.1 381 47.2
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 1.5e-89 335.1 689 37.3
SEGI_05718 Sequoiadendron giganteum HOM05D003570 ORTHO05D004207 4.3e-89 333.6 662 39.1
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 5.6e-89 333.2 684 36.1
PSO063G1535 Papaver somniferum HOM05D003570 ORTHO05D004207 1.7e-85 321.6 324 52.8
PSO754G0035 Papaver somniferum HOM05D003570 ORTHO05D004207 8.3e-85 319.3 331 51.4
Hma1.2p1_1533F.1_g289360 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 1.4e-79 302.0 280 52.1
PSO063G3251 Papaver somniferum HOM05D003570 ORTHO05D004207 3.4e-78 297.4 674 34.6
Zm00001eb212370 Zea mays HOM05D003570 ORTHO05D004207 6.4e-77 293.1 559 41.7
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 4.6e-75 287.0 664 38.1
Zm00001eb062020 Zea mays HOM05D003570 ORTHO05D004207 4.6e-75 287.0 589 40.4
Oeu038646.1 Olea europaea HOM05D003570 ORTHO05D004207 2.3e-74 284.6 451 40.8
PGSC0003DMG400016968 Solanum tuberosum HOM05D003570 ORTHO05D004207 7.3e-73 279.6 277 51.3
vmacro17618 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.2e-72 278.9 566 38.7
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 4.7e-72 276.9 479 44.3
Rhsim12G0108000 Rhododendron simsii HOM05D003570 ORTHO05D004207 1.4e-71 275.4 276 52.9
Pp3c9_21420 Physcomitrium patens HOM05D003570 ORTHO05D004207 2.9e-69 267.7 664 33.7
Dinv15203 Davidia involucrata HOM05D003570 ORTHO05D004207 1.9e-65 255.0 227 54.6
Aqoxy5G03688 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 1.3e-64 252.3 248 54.4
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 8.1e-64 249.6 591 36.5
Mapoly0004s0250 Marchantia polymorpha HOM05D003570 ORTHO05D004207 1.5e-62 245.4 653 33.4
vmacro16171 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.5e-62 245.4 255 50.2
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 9.6e-57 226.1 489 33.7
Aqoxy1G03220 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 1.6e-56 225.3 329 40.7
SMO367G0645 Selaginella moellendorffii HOM05D003570 ORTHO05D004207 1.2e-54 219.2 654 29.4
CBR_g38118 Chara braunii HOM05D003570 ORTHO05D004207 1.7e-53 215.3 707 31.8
vmacro16173 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 6.4e-53 213.4 262 47.3
Haze_20779 Corylus avellana HOM05D003570 ORTHO05D004207 4.2e-52 210.7 282 46.1
FAN08G0154 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.1e-47 196.1 503 34.2
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 2.4e-47 194.9 184 54.3
CDE06G1553 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 3.4e-46 191.0 173 50.9
unitig_22.g6426 Utricularia gibba HOM05D003570 ORTHO05D004207 1.6e-43 182.2 177 49.7
CSS0045431 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 1.8e-42 178.7 148 59.5
Rhsim12G0107900 Rhododendron simsii HOM05D003570 ORTHO05D004207 1.9e-41 175.3 383 42.8
vmacro16170 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.4e-36 159.1 419 37.5
AagrBONN_evm.TU.Sc2ySwM_362.2178 Anthoceros agrestis HOM05D003570 ORTHO05D004207 7.4e-33 146.7 167 38.9
Nitab4.5_0000229g0040 Nicotiana tabacum HOM05D003570 ORTHO05D004207 7.4e-33 146.7 270 38.1
MCO05G059 Micromonas commoda HOM05D003570 ORTHO05D004207 8.2e-32 143.3 257 30.4
Nitab4.5_0000229g0020 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.1e-31 142.9 256 38.3
Sopen04g013730 Solanum pennellii HOM05D003570 ORTHO05D004207 1.4e-31 142.5 120 53.3
EL10Ac8g19584 Beta vulgaris HOM05D003570 ORTHO05D004207 1.5e-30 139.0 119 53.8
FAN13G1935 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.4e-28 132.5 421 35.9
Cre06.g300900 Chlamydomonas reinhardtii HOM05D003570 ORTHO05D004207 1.9e-28 132.1 259 32.4
CSS0031984 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 6.7e-26 123.6 259 35.9
vmacro16172 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 8.8e-26 123.2 308 32.5
AagrBONN_evm.TU.Sc2ySwM_344.4464 Anthoceros agrestis HOM05D003570 ORTHO05D004207 2.2e-24 118.6 530 31.3
Medtr7g034350 Medicago truncatula HOM05D003570 ORTHO05D004207 8.2e-24 116.7 205 33.7
AL2G22720 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.1e-23 116.3 145 45.5
FAN08G3485 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.1e-23 116.3 123 49.6
Aqoxy5G03687 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 2.4e-23 115.2 256 35.9
PRCOL_00001147 Prasinoderma coloniale HOM05D003570 ORTHO05D004207 3.1e-23 114.8 263 28.9
Lj3A151T24 Lonicera japonica HOM05D003570 ORTHO05D004207 4.1e-23 114.4 162 50.6
Hma1.2p1_0054F.1_g030990 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 5.3e-23 114.0 87 51.7
BolC5t29767H Brassica oleracea HOM05D003570 ORTHO05D004207 1.2e-22 112.8 296 30.4
TAR374G0522 Trochodendron aralioides HOM05D003570 ORTHO05D004207 1.3e-21 109.4 82 61.0
BcaC05g25084 Brassica carinata HOM05D003570 ORTHO05D004207 1.7e-21 109.0 243 32.9
Hma1.2p1_1533F.1_g289350 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 1.1e-20 106.3 145 42.8
CDE06G0651 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 2.5e-20 105.1 286 38.5
Glyma.18G013000 Glycine max HOM05D003570 ORTHO05D004207 1.1e-17 96.3 78 51.3
BolC4t26878H Brassica oleracea HOM05D003570 ORTHO05D004207 8.2e-16 90.1 210 31.4
AT4G05523 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 1.1e-15 89.7 226 32.3
Sp2g10400 Schrenkiella parvula HOM05D003570 ORTHO05D004207 1.8e-15 89.0 109 42.2
TAR374G0931 Trochodendron aralioides HOM05D003570 ORTHO05D004207 5.3e-15 87.4 197 35.0
C05p10220 Brassica napus HOM05D003570 ORTHO05D004207 4.5e-14 84.3 119 39.5
Actinidia15112 Actinidia chinensis HOM05D003570 ORTHO05D004207 1.3e-13 82.8 80 51.2
unitig_22.g6425 Utricularia gibba HOM05D003570 ORTHO05D004207 1.3e-13 82.8 192 33.3
FvH4_5g15750 Fragaria vesca HOM05D003570 ORTHO05D004207 5.0e-13 80.9 73 52.1
C04p53310 Brassica napus HOM05D003570 ORTHO05D004207 6.5e-13 80.5 306 28.1
PSO063G3896 Papaver somniferum HOM05D003570 ORTHO05D004207 8.5e-13 80.1 269 35.7
MELO3C033658.2 Cucumis melo HOM05D003570 ORTHO05D004207 2.7e-11 75.1 81 56.8
Actinidia15111 Actinidia chinensis HOM05D003570 ORTHO05D004207 4.7e-11 74.3 69 55.1
A07p19900 Brassica napus HOM05D003570 ORTHO05D004207 4.7e-11 74.3 210 27.6
EL10Ac1g01653 Beta vulgaris HOM05D003570 ORTHO05D004207 6.1e-11 73.9 52 63.5
A07p18160 Brassica napus HOM05D003570 ORTHO05D004207 6.1e-11 73.9 202 27.2
BraA01t00580Z Brassica rapa HOM05D003570 ORTHO05D004207 6.1e-11 73.9 202 27.2
EL10As2g23164 Beta vulgaris HOM05D003570 ORTHO05D004207 1.0e-10 73.2 156 32.7
BcaC06g34341 Brassica carinata HOM05D003570 ORTHO05D004207 3.0e-10 71.6 202 25.7
MD05G1151500 Malus domestica HOM05D003570 ORTHO05D004207 1.2e-09 69.7 51 62.7
BcaC02g08536 Brassica carinata HOM05D003570 ORTHO05D004207 2.0e-09 68.9 148 31.1
C04p53220 Brassica napus HOM05D003570 ORTHO05D004207 8.2e-08 63.5 178 28.1
FAN18G0384 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.8e-07 62.4 163 33.1
Hund04894 Selenicereus undatus HOM05D003570 ORTHO05D004207 3.1e-07 61.6 68 51.5
FvH4_5g15741 Fragaria vesca HOM05D003570 ORTHO05D004207 5.3e-07 60.8 156 33.3
AL2G22730 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 2.7e-06 58.5 130 30.8


User provided reference genes

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