Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 9.4e-113 410.2 209 100.0
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 2.0e-110 402.5 207 98.6
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 2.2e-109 399.1 207 98.1
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 3.1e-108 395.2 209 96.2
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 8.0e-104 380.6 203 93.6
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 3.9e-103 378.3 203 93.1
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 5.2e-103 377.9 203 92.6
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 6.7e-103 377.5 203 93.1
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 6.7e-103 377.5 203 93.1
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 6.7e-103 377.5 203 93.1
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 8.8e-103 377.1 203 93.1
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 8.8e-103 377.1 203 93.1
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 1.1e-102 376.7 203 92.1
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 1.1e-102 376.7 203 92.1
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 1.1e-102 376.7 203 92.1
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 1.1e-102 376.7 203 92.6
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 1.5e-102 376.3 203 91.6
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 1.5e-102 376.3 207 89.9
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 2.0e-102 375.9 207 91.3
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 2.6e-102 375.6 203 91.1
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 3.3e-102 375.2 203 93.1
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 3.3e-102 375.2 209 90.0
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 3.3e-102 375.2 203 92.6
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 4.4e-102 374.8 203 91.1
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 5.7e-102 374.4 203 92.1
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 5.7e-102 374.4 203 91.1
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 7.4e-102 374.0 203 91.6
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 9.7e-102 373.6 203 91.1
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 9.7e-102 373.6 203 91.1
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 1.7e-101 372.9 203 90.6
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 2.2e-101 372.5 203 90.6
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 2.2e-101 372.5 203 91.6
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 2.2e-101 372.5 203 91.1
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 2.2e-101 372.5 207 89.4
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 2.8e-101 372.1 203 91.6
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 4.8e-101 371.3 203 91.6
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 4.8e-101 371.3 207 90.3
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 1.1e-100 370.2 203 91.1
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.1e-100 370.2 203 90.6
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 1.1e-100 370.2 203 90.6
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 1.4e-100 369.8 203 91.1
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 1.4e-100 369.8 203 90.6
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 1.4e-100 369.8 203 91.1
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 1.4e-100 369.8 203 91.1
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 2.4e-100 369.0 203 90.1
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.4e-100 369.0 203 90.1
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 3.1e-100 368.6 202 90.1
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 3.1e-100 368.6 203 91.1
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 3.1e-100 368.6 208 89.4
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 4.1e-100 368.2 203 89.2
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 5.3e-100 367.9 203 90.1
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 5.3e-100 367.9 207 89.9
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 5.3e-100 367.9 202 89.6
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 7.0e-100 367.5 203 90.1
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 7.0e-100 367.5 203 89.7
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 7.0e-100 367.5 203 89.7
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 7.0e-100 367.5 203 89.7
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 7.0e-100 367.5 203 90.6
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 9.1e-100 367.1 203 90.6
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 1.2e-99 366.7 206 88.3
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 1.6e-99 366.3 209 87.6
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 2.0e-99 365.9 209 87.1
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 2.0e-99 365.9 209 87.1
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 2.6e-99 365.5 209 87.1
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 3.5e-99 365.2 203 89.7
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 4.5e-99 364.8 204 88.7
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 1.0e-98 363.6 203 89.2
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 1.3e-98 363.2 203 88.7
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 1.3e-98 363.2 203 89.2
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 1.7e-98 362.8 203 89.2
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 1.7e-98 362.8 203 89.2
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 2.2e-98 362.5 204 88.2
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 5.0e-98 361.3 203 89.7
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 1.1e-97 360.1 203 87.7
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 1.5e-97 359.8 210 87.1
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 1.5e-97 359.8 210 87.1
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 1.5e-97 359.8 210 87.1
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 1.9e-97 359.4 210 87.1
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 1.9e-97 359.4 202 88.1
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 2.5e-97 359.0 203 87.7
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 2.5e-97 359.0 196 91.8
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 7.2e-97 357.5 210 86.7
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 7.2e-97 357.5 210 86.7
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 9.4e-97 357.1 203 87.7
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 1.6e-96 356.3 213 84.0
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 2.1e-96 355.9 210 86.2
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 4.7e-96 354.8 210 86.2
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 4.7e-96 354.8 207 87.0
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 4.7e-96 354.8 203 88.2
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 2.3e-95 352.4 210 85.2
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 5.2e-95 351.3 203 85.2
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 5.2e-95 351.3 210 85.2
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 2.6e-94 349.0 203 84.7
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 2.6e-94 349.0 203 87.7
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 2.2e-93 345.9 203 82.8
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 2.2e-93 345.9 203 82.3
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.8e-92 342.8 202 85.6
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.8e-92 342.8 202 85.6
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 2.4e-92 342.4 203 85.2
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 3.1e-92 342.0 202 85.6
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 7.7e-91 337.4 210 82.9
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.9e-90 335.5 202 83.7
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 4.2e-89 331.6 206 83.5
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.0e-87 327.0 173 91.9
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 3.0e-87 325.5 203 82.8
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 5.2e-87 324.7 174 92.0
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 2.0e-86 322.8 174 90.8
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 9.8e-86 320.5 208 81.7
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 3.7e-85 318.5 174 90.8
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 1.1e-84 317.0 203 74.9
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 4.1e-84 315.1 190 82.6
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 1.2e-83 313.5 167 92.2
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 4.5e-83 311.6 178 86.0
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 1.9e-81 306.2 174 85.1
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 9.5e-81 303.9 203 79.3
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 2.4e-76 289.3 204 72.5
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 7.0e-76 287.7 207 73.4
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 7.8e-75 284.3 151 94.0
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 3.3e-73 278.9 151 90.7
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 2.0e-67 259.6 203 61.6
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 4.6e-67 258.5 200 62.5
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 7.8e-67 257.7 202 61.9
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 7.8e-67 257.7 229 62.4
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 1.1e-65 253.8 199 63.3
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 2.8e-64 249.2 203 66.5
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 5.4e-60 235.0 198 57.1
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 1.2e-59 233.8 157 77.7
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 7.3e-57 224.6 133 88.0
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 7.5e-54 214.5 115 90.4
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 1.3e-53 213.8 207 52.7
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 1.1e-52 210.7 208 54.3
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 5.1e-50 201.8 198 49.0
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 3.3e-49 199.1 164 65.2
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 1.6e-48 196.8 208 54.8
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 3.6e-48 195.7 146 71.2
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 4.9e-45 185.3 196 44.4
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 3.5e-43 179.1 230 43.5
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 5.6e-41 171.8 160 62.5
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 1.1e-39 167.5 97 83.5
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 2.2e-37 159.8 203 48.8
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 7.8e-35 151.4 203 47.8
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 1.3e-32 144.1 187 39.0
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 1.5e-30 137.1 99 71.7
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 5.8e-30 135.2 74 89.2
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 1.9e-28 130.2 91 76.9
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.6e-27 127.1 83 74.7
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 9.6e-25 117.9 89 69.7
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 8.1e-24 114.8 132 51.5
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 4.0e-23 112.5 73 79.5
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 4.5e-22 109.0 60 88.3
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 1.3e-21 107.5 55 87.3
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 1.2e-19 100.9 79 65.8
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 7.9e-11 71.6 57 61.4
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 5.1e-10 68.9 62 64.5
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.3e-08 64.3 38 78.9
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 5.3e-07 58.9 137 24.8
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 1.5e-06 57.4 39 64.1
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 1.5e-06 57.4 58 62.1


User provided reference genes

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