Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1783.1 887 100.0
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1645.6 834 98.0
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1537.3 834 91.1
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1532.7 836 92.5
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1377.5 838 80.2
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1370.9 845 79.3
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1370.1 838 80.0
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1360.9 838 78.5
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1357.0 838 79.5
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1355.9 837 79.9
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1353.6 838 79.4
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1350.9 840 79.5
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1350.9 838 79.4
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1350.1 838 78.9
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1348.6 868 77.5
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1348.2 839 79.7
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1344.7 838 78.3
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1343.9 838 78.9
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1340.1 838 79.4
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1337.4 840 78.8
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1336.2 838 78.0
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1336.2 838 79.0
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1335.9 841 78.1
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1335.1 858 77.3
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1334.7 838 78.3
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1332.8 838 78.6
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1331.2 839 77.7
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1330.9 838 78.6
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1326.2 838 78.5
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1326.2 826 79.2
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1325.8 837 77.8
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1325.1 838 78.3
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1320.1 830 78.7
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1319.7 840 78.6
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1319.7 838 78.4
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1319.3 838 77.9
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1317.8 838 77.7
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1317.8 838 77.7
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1317.4 840 77.4
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1317.0 838 77.2
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1316.2 838 77.6
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1316.2 838 78.0
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1315.4 838 78.3
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1315.4 838 77.3
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1313.5 844 77.8
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1313.1 839 77.5
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1313.1 838 77.1
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1312.0 838 77.3
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1311.2 843 75.6
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1309.3 838 77.9
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1308.5 839 77.6
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1308.5 838 77.9
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1307.4 843 76.3
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1307.0 838 77.4
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1306.6 838 76.7
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1304.7 838 77.4
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1303.9 838 77.6
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1302.7 838 76.3
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1302.3 845 77.2
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1301.6 839 77.5
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1300.8 839 77.6
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1300.8 915 72.6
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1300.0 870 74.0
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1299.3 845 76.8
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1298.9 838 77.4
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1297.3 845 76.9
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1295.4 838 77.3
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1295.4 845 76.4
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1293.9 838 77.1
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1293.1 838 75.5
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1292.7 838 75.3
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1281.2 967 68.6
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1278.5 911 71.2
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1271.9 841 74.6
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1271.1 904 72.3
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1265.8 838 75.4
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1261.5 851 73.7
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1260.4 858 73.8
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1258.0 911 71.1
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1251.9 748 82.9
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1245.3 867 73.1
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1240.7 821 75.9
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1239.6 842 74.5
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1224.5 826 74.1
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1223.8 781 77.3
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1217.2 764 78.0
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1211.4 751 79.0
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1207.2 765 78.4
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1206.8 842 73.5
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1201.8 839 70.3
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1199.1 764 77.0
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1194.1 838 71.7
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1191.8 839 72.2
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1187.2 775 77.0
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1185.2 858 68.8
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1159.8 823 69.1
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1154.8 788 72.0
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1151.0 844 68.0
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1115.5 685 79.3
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 0.0e+00 1108.2 852 65.0
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 0.0e+00 1094.7 839 65.8
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1089.7 838 67.1
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 0.0e+00 1085.9 697 76.5
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 0.0e+00 1084.3 839 65.2
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 1.2e-307 1059.7 848 63.4
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 6.2e-299 1030.8 655 77.3
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 6.1e-270 934.5 845 60.6
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 1.0e-253 880.6 642 69.8
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 2.2e-235 819.7 542 73.6
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 2.5e-215 753.1 513 71.2
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 1.9e-202 710.3 418 83.7
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 4.5e-156 556.2 329 83.0
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 1.9e-114 417.9 300 74.0
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 1.2e-111 408.7 254 80.7
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.0e-111 407.9 307 64.2
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 3.0e-107 394.0 285 69.8
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 1.7e-94 351.7 194 85.6
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 1.7e-86 325.1 384 49.7
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 1.7e-83 315.1 265 63.0
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 8.7e-67 259.6 271 54.2
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 3.6e-65 254.2 182 71.4
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.8e-51 208.8 139 76.3
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.6e-49 202.2 140 70.0
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 1.9e-42 178.7 117 76.1
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 3.9e-35 154.5 94 76.6
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 1.7e-33 149.1 83 81.9
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 2.0e-31 142.1 176 44.9
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 7.2e-29 133.7 82 79.3
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 9.7e-26 123.2 85 67.1
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 9.1e-24 116.7 76 72.4
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 2.6e-23 115.2 84 66.7
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 3.5e-23 114.8 73 78.1
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 2.1e-20 105.5 67 76.1
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 4.1e-16 91.3 68 58.8
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 5.5e-13 80.9 105 47.6
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 2.8e-09 68.6 47 68.1
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.7e-09 68.2 42 81.0
Lsat_1_v5_gn_2_31840 Lactuca sativa HOM05D005173 ORTHO05D006214 4.1e-08 64.7 118 33.1
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 1.0e-06 60.1 41 70.7
Lsat_1_v5_gn_5_73601 Lactuca sativa HOM05D000051 ORTHO05D000015 2.2e-06 58.9 49 59.2


User provided reference genes

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