Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011880.2 Cucumis melo HOM05D003413 ORTHO05D004197 6.4e-81 303.9 142 100.0
CsaV3_5G030400 Cucumis sativus L. HOM05D003413 ORTHO05D004197 2.1e-60 235.7 116 94.8
Manes.13G017700 Manihot esculenta HOM05D003413 ORTHO05D004197 1.0e-57 226.9 117 90.6
Duzib268G0982 Durio zibethinus HOM05D003413 ORTHO05D004197 2.2e-57 225.7 117 89.7
TWI36G0673 Tripterygium wilfordii HOM05D003413 ORTHO05D004197 2.9e-57 225.3 117 90.6
GSVIVG01010375001 Vitis vinifera HOM05D003413 ORTHO05D004197 3.8e-57 224.9 117 89.7
Thecc.02G276700 Theobroma cacao HOM05D003413 ORTHO05D004197 6.5e-57 224.2 117 89.7
TWI18G0413 Tripterygium wilfordii HOM05D003413 ORTHO05D004197 6.5e-57 224.2 117 89.7
Sed0019386 Sechium edule HOM05D003413 ORTHO05D004197 8.5e-57 223.8 116 91.4
Gohir.A01G160500 Gossypium hirsutum HOM05D003413 ORTHO05D004197 1.1e-56 223.4 117 89.7
Gohir.D01G155200 Gossypium hirsutum HOM05D003413 ORTHO05D004197 1.1e-56 223.4 117 89.7
Gorai.002G192400 Gossypium raimondii HOM05D003413 ORTHO05D004197 1.1e-56 223.4 117 89.7
Aqoxy5G03439 Aquilegia oxysepala HOM05D003413 ORTHO05D004197 1.4e-56 223.0 117 88.9
TAR629G2699 Trochodendron aralioides HOM05D003413 ORTHO05D004197 1.4e-56 223.0 117 88.9
Cpa.g.sc43.24 Carica papaya HOM05D003413 ORTHO05D004197 1.9e-56 222.6 117 88.0
Nn3g16510 Nelumbo nucifera HOM05D003413 ORTHO05D004197 1.9e-56 222.6 117 88.9
Cfa009337 Carpinus fangiana HOM05D003413 ORTHO05D004197 2.5e-56 222.2 117 88.0
Cfa020602 Carpinus fangiana HOM05D003413 ORTHO05D004197 2.5e-56 222.2 117 88.0
Haze_12385 Corylus avellana HOM05D003413 ORTHO05D004197 2.5e-56 222.2 117 88.0
FAN17G2448 Fragaria x ananassa HOM05D003413 ORTHO05D004197 3.2e-56 221.9 115 90.4
FAN22G2268 Fragaria x ananassa HOM05D003413 ORTHO05D004197 3.2e-56 221.9 115 90.4
Manes.12G013500 Manihot esculenta HOM05D003413 ORTHO05D004197 3.2e-56 221.9 117 88.0
CiPaw.06G100800 Carya illinoinensis HOM05D003413 ORTHO05D004197 4.2e-56 221.5 117 88.0
ClCG11G013810 Citrullus lanatus HOM05D003413 ORTHO05D004197 4.2e-56 221.5 116 89.7
Gohir.D04G181800 Gossypium hirsutum HOM05D003413 ORTHO05D004197 4.2e-56 221.5 117 88.0
Gorai.012G175200 Gossypium raimondii HOM05D003413 ORTHO05D004197 4.2e-56 221.5 117 88.0
RcHm_v2.0_Chr4g0430701 Rosa chinensis HOM05D003413 ORTHO05D004197 5.5e-56 221.1 115 90.4
FAN12G0555 Fragaria x ananassa HOM05D003413 ORTHO05D004197 7.2e-56 220.7 115 89.6
Glyma.04G194700 Glycine max HOM05D003413 ORTHO05D004197 7.2e-56 220.7 117 88.9
Glyma.06G171200 Glycine max HOM05D003413 ORTHO05D004197 7.2e-56 220.7 117 88.9
MD10G1030600 Malus domestica HOM05D003413 ORTHO05D004197 7.2e-56 220.7 115 90.4
Dinv14816 Davidia involucrata HOM05D003413 ORTHO05D004197 9.3e-56 220.3 117 88.0
QL04p035333 Quercus lobata HOM05D003413 ORTHO05D004197 9.3e-56 220.3 117 87.2
VMungo1309G0564 Vigna mungo HOM05D003413 ORTHO05D004197 9.3e-56 220.3 117 88.0
Dinv10975 Davidia involucrata HOM05D003413 ORTHO05D004197 1.2e-55 219.9 117 88.0
Phvul.009G167300 Phaseolus vulgaris HOM05D003413 ORTHO05D004197 1.2e-55 219.9 117 88.9
CANSAT01G2316 Cannabis sativa HOM05D003413 ORTHO05D004197 1.6e-55 219.5 117 87.2
CiPaw.05G112700 Carya illinoinensis HOM05D003413 ORTHO05D004197 2.1e-55 219.2 116 87.9
ClCG08G010150 Citrullus lanatus HOM05D003413 ORTHO05D004197 2.1e-55 219.2 116 88.8
PGR119G0878 Punica granatum HOM05D003413 ORTHO05D004197 2.1e-55 219.2 117 87.2
Duzib251G0571 Durio zibethinus HOM05D003413 ORTHO05D004197 2.7e-55 218.8 115 88.7
Nitab4.5_0000582g0200 Nicotiana tabacum HOM05D003413 ORTHO05D004197 4.6e-55 218.0 115 89.6
Prupe.1G229300 Prunus persica HOM05D003413 ORTHO05D004197 4.6e-55 218.0 116 88.8
Atru.chr11.2293 Acer truncatum HOM05D003413 ORTHO05D004197 6.1e-55 217.6 117 87.2
Lj1g0010419 Lotus japonicus HOM05D003413 ORTHO05D004197 6.1e-55 217.6 116 88.8
Oeu020301.1 Olea europaea HOM05D003413 ORTHO05D004197 7.9e-55 217.2 117 87.2
Peaxi162Scf00858g00310 Petunia axillaris HOM05D003413 ORTHO05D004197 7.9e-55 217.2 115 89.6
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 1.0e-54 216.9 114 89.5
Lalb_Chr12g0202151 Lupinus albus HOM05D003413 ORTHO05D004197 1.3e-54 216.5 118 84.7
Nitab4.5_0004212g0060 Nicotiana tabacum HOM05D003413 ORTHO05D004197 1.3e-54 216.5 115 88.7
Gohir.A04G138900 Gossypium hirsutum HOM05D003413 ORTHO05D004197 1.8e-54 216.1 117 86.3
MD16G1116800 Malus domestica HOM05D003413 ORTHO05D004197 1.8e-54 216.1 116 87.9
COL.COLO4_20354 Corchorus olitorius HOM05D003413 ORTHO05D004197 2.3e-54 215.7 117 86.3
Nitab4.5_0000071g0160 Nicotiana tabacum HOM05D003413 ORTHO05D004197 2.3e-54 215.7 115 87.8
Nitab4.5_0012482g0010 Nicotiana tabacum HOM05D003413 ORTHO05D004197 2.3e-54 215.7 115 87.8
Oeu056675.1 Olea europaea HOM05D003413 ORTHO05D004197 2.3e-54 215.7 116 87.1
Solyc05g056160.3 Solanum lycopersicum HOM05D003413 ORTHO05D004197 2.3e-54 215.7 115 88.7
Sopen05g034570 Solanum pennellii HOM05D003413 ORTHO05D004197 2.3e-54 215.7 115 88.7
PGSC0003DMG400023337 Solanum tuberosum HOM05D003413 ORTHO05D004197 2.3e-54 215.7 115 88.7
ATR1120G105 Amborella trichopoda HOM05D003413 ORTHO05D004197 3.9e-54 214.9 116 87.1
Eucgr.H04655 Eucalyptus grandis HOM05D003413 ORTHO05D004197 3.9e-54 214.9 115 87.8
Migut.E00028 Erythranthe guttata HOM05D003413 ORTHO05D004197 5.1e-54 214.5 116 87.1
Oeu049152.1 Olea europaea HOM05D003413 ORTHO05D004197 5.1e-54 214.5 115 87.0
Sed0004676 Sechium edule HOM05D003413 ORTHO05D004197 5.1e-54 214.5 116 86.2
Sed0010714 Sechium edule HOM05D003413 ORTHO05D004197 5.1e-54 214.5 116 86.2
Lalb_Chr06g0172271 Lupinus albus HOM05D003413 ORTHO05D004197 8.7e-54 213.8 114 86.8
Lalb_Chr07g0183311 Lupinus albus HOM05D003413 ORTHO05D004197 8.7e-54 213.8 114 86.8
arahy.Tifrunner.gnm1.ann1.DD2PIM Arachis hypogaea HOM05D003413 ORTHO05D004197 1.1e-53 213.4 117 84.6
Psat0s14g0120 Pisum sativum HOM05D003413 ORTHO05D004197 1.5e-53 213.0 117 85.5
SalBow1G2866 Salvia bowleyana HOM05D003413 ORTHO05D004197 1.5e-53 213.0 115 87.8
Ca_24508_v3 Cicer arietinum L. HOM05D003413 ORTHO05D004197 1.9e-53 212.6 117 84.6
CSS0015662 Camellia sinensis var. sinensis HOM05D003413 ORTHO05D004197 2.5e-53 212.2 114 87.7
AUR62005593 Chenopodium quinoa HOM05D003413 ORTHO05D004197 2.5e-53 212.2 117 84.6
AUR62024135 Chenopodium quinoa HOM05D003413 ORTHO05D004197 2.5e-53 212.2 117 84.6
arahy.Tifrunner.gnm1.ann1.3BP915 Arachis hypogaea HOM05D001045 ORTHO05D004836 3.3e-53 211.8 117 83.8
HPP92_020236 Vanilla planifolia HOM05D003413 ORTHO05D004197 4.3e-53 211.5 116 84.5
Lj3C1066T5 Lonicera japonica HOM05D003413 ORTHO05D004197 5.7e-53 211.1 116 84.5
Medtr3g089040 Medicago truncatula HOM05D003413 ORTHO05D004197 5.7e-53 211.1 117 84.6
arahy.Tifrunner.gnm1.ann1.R6HZSL Arachis hypogaea HOM05D003413 ORTHO05D004197 7.4e-53 210.7 117 82.1
Hund21776 Selenicereus undatus HOM05D003413 ORTHO05D004197 7.4e-53 210.7 118 83.9
Sopen03g016110 Solanum pennellii HOM05D003413 ORTHO05D004197 9.7e-53 210.3 115 86.1
SGA_v2.0_scaffold96G29099 Striga asiatica HOM05D003413 ORTHO05D004197 9.7e-53 210.3 116 83.6
MSTRG.2454 Avicennia marina HOM05D003413 ORTHO05D004197 2.2e-52 209.1 116 85.3
CAN.G694.91 Capsicum annuum HOM05D003413 ORTHO05D004197 2.2e-52 209.1 115 85.2
Thhalv10004762m.g Eutrema salsugineum HOM05D003413 ORTHO05D004197 2.2e-52 209.1 116 83.6
vmacro20451 Vaccinium macrocarpon HOM05D003413 ORTHO05D004197 2.2e-52 209.1 116 84.5
Ah.03g136290 Amaranthus hybridus HOM05D003413 ORTHO05D004197 2.8e-52 208.8 117 84.6
PSO063G0094 Papaver somniferum HOM05D003413 ORTHO05D004197 2.8e-52 208.8 115 84.3
CDE07G0715 Ceratophyllum demersum HOM05D003413 ORTHO05D004197 3.7e-52 208.4 118 82.2
CSS0027762 Camellia sinensis var. sinensis HOM05D003413 ORTHO05D004197 6.3e-52 207.6 114 85.1
THA.LOC104812691 Tarenaya hassleriana HOM05D003413 ORTHO05D004197 6.3e-52 207.6 114 84.2
THA.LOC104814351 Tarenaya hassleriana HOM05D003413 ORTHO05D004197 6.3e-52 207.6 114 84.2
DCAR_026471 Daucus carota HOM05D003413 ORTHO05D004197 8.2e-52 207.2 116 82.8
unitig_52.g17190 Utricularia gibba HOM05D003413 ORTHO05D004197 8.2e-52 207.2 116 82.8
HanXRQChr08g0207581 Helianthus annuus HOM05D003413 ORTHO05D004197 1.1e-51 206.8 114 84.2
PSO782G4279 Papaver somniferum HOM05D003413 ORTHO05D004197 1.1e-51 206.8 115 83.5
Hund25449 Selenicereus undatus HOM05D003413 ORTHO05D004197 1.1e-51 206.8 116 85.3
unitig_62.g23655 Utricularia gibba HOM05D003413 ORTHO05D004197 1.1e-51 206.8 116 82.8
Thhalv10008454m.g Eutrema salsugineum HOM05D003413 ORTHO05D004197 1.4e-51 206.5 116 82.8
Actinidia08079 Actinidia chinensis HOM05D003413 ORTHO05D004197 1.8e-51 206.1 114 85.1
Lsat_1_v5_gn_8_149501 Lactuca sativa HOM05D003413 ORTHO05D004197 1.8e-51 206.1 114 84.2
SGA_v2.0_scaffold87G27141 Striga asiatica HOM05D003413 ORTHO05D004197 1.8e-51 206.1 114 83.3
Actinidia30663 Actinidia chinensis HOM05D003413 ORTHO05D004197 3.1e-51 205.3 114 85.1
BcaNung06606 Brassica carinata HOM05D003413 ORTHO05D004197 4.1e-51 204.9 116 81.9
A08p32480 Brassica napus HOM05D003413 ORTHO05D004197 4.1e-51 204.9 116 81.9
BolC8t49206H Brassica oleracea HOM05D003413 ORTHO05D004197 4.1e-51 204.9 116 81.9
BraA08t35172Z Brassica rapa HOM05D003413 ORTHO05D004197 4.1e-51 204.9 116 81.9
Sp1g11610 Schrenkiella parvula HOM05D003413 ORTHO05D004197 4.1e-51 204.9 116 81.9
Carub.0005s0426 Capsella rubella HOM05D003413 ORTHO05D004197 5.3e-51 204.5 116 81.0
ECA246G0095 Erigeron canadensis HOM05D003413 ORTHO05D004197 5.3e-51 204.5 114 82.5
HanXRQChr12g0372411 Helianthus annuus HOM05D003413 ORTHO05D004197 5.3e-51 204.5 114 83.3
C08p15800 Brassica napus HOM05D003413 ORTHO05D004197 6.9e-51 204.1 116 81.9
vmacro01074 Vaccinium macrocarpon HOM05D003413 ORTHO05D004197 9.1e-51 203.8 114 84.2
Aa31LG2G6170 Aethionema arabicum HOM05D003413 ORTHO05D004197 1.2e-50 203.4 116 81.9
MBI04_g08407_MAGBIO Magnolia biondii HOM05D003413 ORTHO05D004197 1.2e-50 203.4 116 82.8
MELO3C011449.2 Cucumis melo HOM05D003413 ORTHO05D004197 2.6e-50 202.2 148 69.6
ECA233G4198 Erigeron canadensis HOM05D003413 ORTHO05D004197 2.6e-50 202.2 114 82.5
Sp2g15490 Schrenkiella parvula HOM05D003413 ORTHO05D004197 2.6e-50 202.2 116 81.0
AT1G13060 Arabidopsis thaliana HOM05D003413 ORTHO05D004197 3.4e-50 201.8 116 81.0
BcaB08g34231 Brassica carinata HOM05D003413 ORTHO05D004197 3.4e-50 201.8 116 81.0
BcaC05g25088 Brassica carinata HOM05D003413 ORTHO05D004197 3.4e-50 201.8 116 81.0
A06p08660 Brassica napus HOM05D003413 ORTHO05D004197 3.4e-50 201.8 116 81.0
Cc11_g16770 Coffea canephora HOM05D003413 ORTHO05D004197 4.5e-50 201.4 116 82.8
Sc01g0009880 Simmondsia chinensis HOM05D003413 ORTHO05D004197 5.9e-50 201.1 116 80.2
BraA06t24062Z Brassica rapa HOM05D003413 ORTHO05D004197 7.7e-50 200.7 116 80.2
AL5G15110 Arabidopsis lyrata HOM05D003413 ORTHO05D004197 1.0e-49 200.3 116 80.2
Carub.0001s1281 Capsella rubella HOM05D003413 ORTHO05D004197 1.3e-49 199.9 116 80.2
AL1G24710 Arabidopsis lyrata HOM05D003413 ORTHO05D004197 1.7e-49 199.5 116 80.2
C08p46910 Brassica napus HOM05D003413 ORTHO05D004197 1.7e-49 199.5 116 80.2
BolC8t52226H Brassica oleracea HOM05D003413 ORTHO05D004197 1.7e-49 199.5 116 80.2
BraA09t41695Z Brassica rapa HOM05D003413 ORTHO05D004197 1.7e-49 199.5 116 80.2
CARHR147350 Cardamine hirsuta HOM05D003413 ORTHO05D004197 3.8e-49 198.4 116 79.3
Actinidia09660 Actinidia chinensis HOM05D003413 ORTHO05D004197 5.0e-49 198.0 114 81.6
AT3G26340 Arabidopsis thaliana HOM05D003413 ORTHO05D004197 5.0e-49 198.0 116 79.3
AagrBONN_evm.TU.Sc2ySwM_117.841 Anthoceros agrestis HOM05D003413 ORTHO05D004197 6.5e-49 197.6 116 78.4
Rhsim12G0102400 Rhododendron simsii HOM05D003413 ORTHO05D004197 6.5e-49 197.6 136 72.1
Sabra08G0134800 Salix brachista HOM05D003413 ORTHO05D004197 6.5e-49 197.6 104 87.5
Aa31LG1G1740 Aethionema arabicum HOM05D003413 ORTHO05D004197 8.5e-49 197.2 116 78.4
C05p10270 Brassica napus HOM05D003413 ORTHO05D004197 8.5e-49 197.2 117 80.3
BolC5t29773H Brassica oleracea HOM05D003413 ORTHO05D004197 8.5e-49 197.2 117 80.3
Potri.008G177000 Populus trichocarpa HOM05D003413 ORTHO05D004197 8.5e-49 197.2 104 85.6
Rhsim12G0028500 Rhododendron simsii HOM05D003413 ORTHO05D004197 8.5e-49 197.2 114 81.6
A09p63450 Brassica napus HOM05D003413 ORTHO05D004197 1.4e-48 196.4 116 79.3
Potri.010G058100 Populus trichocarpa HOM05D003413 ORTHO05D004197 1.9e-48 196.1 116 81.0
CARHR013390 Cardamine hirsuta HOM05D003413 ORTHO05D004197 2.5e-48 195.7 116 78.4
Mapoly0021s0078 Marchantia polymorpha HOM05D003413 ORTHO05D004197 9.4e-48 193.7 113 77.9
Lj6A824T74 Lonicera japonica HOM05D003413 ORTHO05D004197 1.2e-47 193.4 115 76.5
Sabra10G0047300 Salix brachista HOM05D003413 ORTHO05D004197 1.6e-47 193.0 104 84.6
DCAR_026523 Daucus carota HOM05D003413 ORTHO05D004197 2.1e-47 192.6 108 83.3
Pp3c11_2970 Physcomitrium patens HOM05D003413 ORTHO05D004197 2.7e-47 192.2 116 76.7
Psat6g126880 Pisum sativum HOM05D003413 ORTHO05D004197 6.1e-47 191.0 116 75.0
Os06g0153800 Oryza sativa ssp. japonica HOM05D003413 ORTHO05D004197 3.0e-46 188.7 114 78.1
SMO147G0030 Selaginella moellendorffii HOM05D003413 ORTHO05D004197 5.7e-45 184.5 114 72.8
Solyc03g063420.2 Solanum lycopersicum HOM05D003413 ORTHO05D004197 2.8e-44 182.2 136 67.6
Zm00001eb376670 Zea mays HOM05D003413 ORTHO05D004197 2.8e-44 182.2 114 75.4
EL10Ac6g13472 Beta vulgaris HOM05D003413 ORTHO05D004197 8.2e-44 180.6 115 77.4
FAN12G2439 Fragaria x ananassa HOM05D003413 ORTHO05D004197 2.2e-41 172.6 90 90.0
CBR_g34466 Chara braunii HOM05D003413 ORTHO05D004197 1.2e-39 166.8 103 70.9
CBR_g23349 Chara braunii HOM05D003413 ORTHO05D004197 6.1e-39 164.5 102 69.6
MCO06G264 Micromonas commoda HOM05D003413 ORTHO05D004197 3.9e-38 161.8 109 70.6
Hma1.2p1_0458F.1_g157100 Hydrangea macrophylla HOM05D003413 ORTHO05D004197 4.4e-37 158.3 126 62.7
QL03p054247 Quercus lobata HOM05D003413 ORTHO05D004197 9.7e-37 157.1 117 67.5
Pp3c7_21050 Physcomitrium patens HOM05D003413 ORTHO05D004197 2.2e-36 156.0 157 52.9
Cre10.g461950 Chlamydomonas reinhardtii HOM05D003413 ORTHO05D004197 4.8e-36 154.8 102 68.6
PRCOL_00003194 Prasinoderma coloniale HOM05D003413 ORTHO05D004197 2.4e-35 152.5 102 64.7
Hma1.2p1_0531F.1_g173410 Hydrangea macrophylla HOM05D003413 ORTHO05D004197 4.2e-32 141.7 108 65.7
A03p26430 Brassica napus HOM05D003413 ORTHO05D004197 2.3e-30 136.0 76 82.9
BraA01t00949Z Brassica rapa HOM05D003413 ORTHO05D004197 2.3e-30 136.0 76 82.9
BraA03t11858Z Brassica rapa HOM05D003413 ORTHO05D004197 2.3e-30 136.0 76 82.9
Psat6g126800 Pisum sativum HOM05D003413 ORTHO05D004197 5.2e-30 134.8 116 57.8
CDE05G0059 Ceratophyllum demersum HOM05D003413 ORTHO05D004197 8.2e-28 127.5 68 89.7
Peaxi162Scf01227g00031 Petunia axillaris HOM05D003413 ORTHO05D004197 1.1e-27 127.1 116 56.0
HanXRQChr06g0180701 Helianthus annuus HOM05D003413 ORTHO05D004197 3.1e-27 125.6 76 77.6
Haze_26535 Corylus avellana HOM05D003413 ORTHO05D004197 7.7e-26 120.9 101 55.4
MBI04_g47462_MAGBIO Magnolia biondii HOM05D003413 ORTHO05D004197 1.7e-20 103.2 104 53.8
FvH4_4g24020 Fragaria vesca HOM05D003413 ORTHO05D004197 2.1e-15 86.3 44 86.4
RcHm_v2.0_Chr5g0003071 Rosa chinensis HOM05D003413 ORTHO05D029654 2.5e-08 62.8 106 33.0
ATR0626G170 Amborella trichopoda HOM05D003380 ORTHO05D004232 5.6e-08 61.6 117 33.3
SHI04151 Sapria himalayana HOM05D003413 ORTHO05D004197 3.6e-07 58.9 34 79.4
FAN20G2550 Fragaria x ananassa HOM05D013605 ORTHO05D046327 1.0e-06 57.4 90 38.9
Cc07_g08060 Coffea canephora HOM05D003413 ORTHO05D004197 2.3e-06 56.2 47 57.4
PRCOL_00005615 Prasinoderma coloniale HOM05D003380 ORTHO05D004232 2.3e-06 56.2 85 35.3
EL10Ac2g03687 Beta vulgaris HOM05D003380 ORTHO05D004232 3.0e-06 55.8 75 41.3
FvH4_3g18090 Fragaria vesca HOM05D013605 ORTHO05D029654 4.0e-06 55.5 107 29.9
FAN16G3424 Fragaria x ananassa HOM05D013605 ORTHO05D029654 4.0e-06 55.5 107 29.9
AUR62020647 Chenopodium quinoa HOM05D003380 ORTHO05D004232 6.8e-06 54.7 85 36.5
PGR044G1928 Punica granatum HOM05D003380 ORTHO05D004232 8.9e-06 54.3 105 32.4


User provided reference genes

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