Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011864.2 Cucumis melo HOM05D006087 ORTHO05D007479 2.2e-51 205.3 101 100.0
CsaV3_5G030260 Cucumis sativus L. HOM05D006087 ORTHO05D007479 4.6e-49 197.6 100 95.0
Eucgr.B03495 Eucalyptus grandis HOM05D006087 ORTHO05D007479 2.5e-39 165.2 96 81.2
FAN17G2012 Fragaria x ananassa HOM05D006087 ORTHO05D007479 5.7e-39 164.1 94 81.9
TWI75G0102 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 5.7e-39 164.1 95 82.1
FAN07G1634 Fragaria x ananassa HOM05D006087 ORTHO05D007479 9.6e-39 163.3 97 79.4
FAN22G0702 Fragaria x ananassa HOM05D006087 ORTHO05D007479 9.6e-39 163.3 97 79.4
FAN12G1341 Fragaria x ananassa HOM05D006087 ORTHO05D007479 1.3e-38 162.9 97 79.4
FAN12G1854 Fragaria x ananassa HOM05D006087 ORTHO05D007479 1.3e-38 162.9 97 79.4
RcHm_v2.0_Chr4g0430231 Rosa chinensis HOM05D006087 ORTHO05D007479 1.6e-38 162.5 99 78.8
AL8G17230 Arabidopsis lyrata HOM05D006087 ORTHO05D007479 3.7e-38 161.4 96 77.1
MD13G1119200 Malus domestica HOM05D006087 ORTHO05D007479 4.8e-38 161.0 95 80.0
Ciclev10033174m.g Citrus clementina HOM05D006087 ORTHO05D007479 1.1e-37 159.8 97 77.3
Lalb_Chr12g0206161 Lupinus albus HOM05D006087 ORTHO05D007479 1.1e-37 159.8 97 77.3
TAR374G1631 Trochodendron aralioides HOM05D006087 ORTHO05D007479 1.1e-37 159.8 97 78.4
THA.LOC104812595 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 1.8e-37 159.1 97 76.3
TWI18G0911 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 2.4e-37 158.7 95 78.9
Atru.chr11.2326 Acer truncatum HOM05D006087 ORTHO05D007479 3.1e-37 158.3 97 78.4
MD16G1119600 Malus domestica HOM05D006087 ORTHO05D007479 3.1e-37 158.3 95 76.8
Gohir.D12G152800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 4.1e-37 157.9 92 79.3
Gorai.008G165300 Gossypium raimondii HOM05D006087 ORTHO05D007479 4.1e-37 157.9 92 79.3
AT5G43260 Arabidopsis thaliana HOM05D006087 ORTHO05D007479 5.3e-37 157.5 96 76.0
Glyma.18G006400 Glycine max HOM05D006087 ORTHO05D007479 5.3e-37 157.5 96 80.2
Phvul.001G262000 Phaseolus vulgaris HOM05D006087 ORTHO05D007479 9.0e-37 156.8 97 78.4
Glyma.11G250700 Glycine max HOM05D006087 ORTHO05D007479 1.2e-36 156.4 96 79.2
TPR.G17782 Trifolium pratense HOM05D006087 ORTHO05D007479 1.5e-36 156.0 97 77.3
Potri.001G056601 Populus trichocarpa HOM05D006087 ORTHO05D007479 2.0e-36 155.6 97 80.4
Lj4g0011842 Lotus japonicus HOM05D006087 ORTHO05D007479 2.6e-36 155.2 99 76.8
CANSAT01G2640 Cannabis sativa HOM05D006087 ORTHO05D007479 3.4e-36 154.8 99 79.8
Duzib248G0070 Durio zibethinus HOM05D006087 ORTHO05D007479 3.4e-36 154.8 98 74.5
Manes.12G011100 Manihot esculenta HOM05D006087 ORTHO05D007479 4.5e-36 154.5 97 77.3
TAR622G0081 Trochodendron aralioides HOM05D006087 ORTHO05D007479 4.5e-36 154.5 99 75.8
CiPaw.05G109600 Carya illinoinensis HOM05D006087 ORTHO05D007479 5.9e-36 154.1 97 77.3
COL.COLO4_20404 Corchorus olitorius HOM05D006087 ORTHO05D007479 5.9e-36 154.1 98 76.5
Psat5g096360 Pisum sativum HOM05D006087 ORTHO05D007479 5.9e-36 154.1 97 77.3
Sp2g08050 Schrenkiella parvula HOM05D006087 ORTHO05D007479 5.9e-36 154.1 97 75.3
CARHR180610 Cardamine hirsuta HOM05D006087 ORTHO05D007479 1.0e-35 153.3 96 74.0
Carub.0008s0544 Capsella rubella HOM05D006087 ORTHO05D007479 1.3e-35 152.9 97 75.3
Ca_16458_v3 Cicer arietinum L. HOM05D006087 ORTHO05D007479 1.7e-35 152.5 97 77.3
TWI36G1569 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 1.7e-35 152.5 94 75.5
QL03p052667 Quercus lobata HOM05D006087 ORTHO05D007479 2.9e-35 151.8 97 77.3
Sc04g0010140 Simmondsia chinensis HOM05D006087 ORTHO05D007479 5.0e-35 151.0 97 75.3
unitig_749.g13305 Utricularia gibba HOM05D006087 ORTHO05D007479 5.0e-35 151.0 98 74.5
Medtr3g085300 Medicago truncatula HOM05D006087 ORTHO05D007479 6.5e-35 150.6 98 77.6
A06p47950 Brassica napus HOM05D006087 ORTHO05D007479 8.4e-35 150.2 97 73.2
C07p25860 Brassica napus HOM05D006087 ORTHO05D007479 8.4e-35 150.2 97 73.2
BolC7t43103H Brassica oleracea HOM05D006087 ORTHO05D007479 8.4e-35 150.2 97 73.2
BraA06t27665Z Brassica rapa HOM05D006087 ORTHO05D007479 8.4e-35 150.2 97 73.2
Ah.03g136140 Amaranthus hybridus HOM05D006087 ORTHO05D007479 1.1e-34 149.8 91 75.8
Gohir.D04G182800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 1.1e-34 149.8 92 76.1
Gorai.012G175800 Gossypium raimondii HOM05D006087 ORTHO05D007479 1.1e-34 149.8 92 76.1
Actinidia20712 Actinidia chinensis HOM05D006087 ORTHO05D007479 1.4e-34 149.4 97 75.3
Cfa009371 Carpinus fangiana HOM05D006087 ORTHO05D007479 1.4e-34 149.4 97 76.3
Haze_12421 Corylus avellana HOM05D006087 ORTHO05D007479 1.4e-34 149.4 97 76.3
BraA09t37633Z Brassica rapa HOM05D006087 ORTHO05D007479 1.9e-34 149.1 97 74.2
Thecc.02G208200 Theobroma cacao HOM05D006087 ORTHO05D007479 1.9e-34 149.1 98 75.5
BcaB07g31021 Brassica carinata HOM05D006087 ORTHO05D007479 2.5e-34 148.7 97 73.2
BcaC04g21941 Brassica carinata HOM05D006087 ORTHO05D007479 2.5e-34 148.7 97 73.2
C09p25630 Brassica napus HOM05D006087 ORTHO05D007479 2.5e-34 148.7 97 73.2
BolC9t55466H Brassica oleracea HOM05D006087 ORTHO05D007479 2.5e-34 148.7 97 73.2
CDE02G3899 Ceratophyllum demersum HOM05D006087 ORTHO05D007479 2.5e-34 148.7 96 69.8
A09p20220 Brassica napus HOM05D006087 ORTHO05D007479 3.2e-34 148.3 97 74.2
Prupe.1G225600 Prunus persica HOM05D006087 ORTHO05D007479 3.2e-34 148.3 95 75.8
CiPaw.06G102800 Carya illinoinensis HOM05D006087 ORTHO05D007479 4.2e-34 147.9 97 74.2
Gohir.A12G148826 Gossypium hirsutum HOM05D006087 ORTHO05D007479 4.2e-34 147.9 92 75.0
Duzib251G0251 Durio zibethinus HOM05D006087 ORTHO05D007479 5.5e-34 147.5 92 76.1
Cc11_g16920 Coffea canephora HOM05D006087 ORTHO05D007479 1.2e-33 146.4 101 75.2
Oeu036868.1 Olea europaea HOM05D006087 ORTHO05D007479 1.2e-33 146.4 99 73.7
Gohir.A04G139600 Gossypium hirsutum HOM05D006087 ORTHO05D007479 1.6e-33 146.0 92 73.9
PSO017G6027 Papaver somniferum HOM05D006087 ORTHO05D007479 2.7e-33 145.2 96 74.0
PSO478G2574 Papaver somniferum HOM05D006087 ORTHO05D007479 2.7e-33 145.2 96 74.0
SGA_v2.0_scaffold9G04680 Striga asiatica HOM05D006087 ORTHO05D007479 2.7e-33 145.2 101 72.3
Aa31LG9G13330 Aethionema arabicum HOM05D006087 ORTHO05D007479 3.5e-33 144.8 96 74.0
PGSC0003DMG400014051 Solanum tuberosum HOM05D006087 ORTHO05D007479 7.9e-33 143.7 96 76.0
ATR0561G204 Amborella trichopoda HOM05D006087 ORTHO05D007479 1.0e-32 143.3 96 68.8
Ah.02g130900 Amaranthus hybridus HOM05D006087 ORTHO05D007479 1.3e-32 142.9 91 71.4
EL10Ac6g13503 Beta vulgaris HOM05D006087 ORTHO05D007479 2.3e-32 142.1 91 71.4
Solyc05g015470.1 Solanum lycopersicum HOM05D006087 ORTHO05D007479 2.3e-32 142.1 96 75.0
Sopen05g010780 Solanum pennellii HOM05D006087 ORTHO05D007479 2.3e-32 142.1 96 75.0
CAN.G163.9 Capsicum annuum HOM05D006087 ORTHO05D007479 3.9e-32 141.4 98 73.5
HanXRQChr10g0310621 Helianthus annuus HOM05D006087 ORTHO05D007479 1.5e-31 139.4 93 72.0
Duzib268G0474 Durio zibethinus HOM05D006087 ORTHO05D007479 2.5e-31 138.7 95 69.5
Oeu004448.1 Olea europaea HOM05D006087 ORTHO05D007479 3.3e-31 138.3 99 69.7
Potri.003G171800 Populus trichocarpa HOM05D006087 ORTHO05D007479 3.3e-31 138.3 98 73.5
ECA234G0111 Erigeron canadensis HOM05D006087 ORTHO05D007479 5.7e-31 137.5 87 75.9
Hma1.2p1_0065F.1_g035460 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 7.4e-31 137.1 99 68.7
Lsat_1_v5_gn_4_3481 Lactuca sativa HOM05D006087 ORTHO05D007479 7.4e-31 137.1 102 68.6
Nitab4.5_0001808g0020 Nicotiana tabacum HOM05D006087 ORTHO05D007479 1.6e-30 136.0 96 75.0
Nitab4.5_0000039g0180 Nicotiana tabacum HOM05D006087 ORTHO05D007479 8.2e-30 133.7 88 76.1
MELO3C010741.2 Cucumis melo HOM05D006087 ORTHO05D007479 1.8e-29 132.5 95 68.4
Cpa.g.sc43.59 Carica papaya HOM05D006087 ORTHO05D007479 2.4e-29 132.1 97 69.1
THA.LOC104820522 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 6.9e-29 130.6 97 64.9
Lalb_Chr23g0278081 Lupinus albus HOM05D006087 ORTHO05D007479 1.2e-28 129.8 97 68.0
Mapoly0062s0032 Marchantia polymorpha HOM05D006087 ORTHO05D007479 1.2e-28 129.8 99 62.6
Rhsim12G0025700 Rhododendron simsii HOM05D006087 ORTHO05D007479 2.6e-28 128.6 100 67.0
Aqoxy5G03370 Aquilegia oxysepala HOM05D006087 ORTHO05D007479 5.9e-28 127.5 93 68.8
THA.LOC104807129 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 1.3e-27 126.3 99 64.6
THA.LOC104825505 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 2.9e-27 125.2 99 63.6
PGR102G3303 Punica granatum HOM05D006087 ORTHO05D007479 5.0e-27 124.4 96 65.6
Migut.K00735 Erythranthe guttata HOM05D006087 ORTHO05D007479 6.5e-27 124.0 99 63.6
CSS0016505 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 1.4e-26 122.9 85 72.9
CSS0027394 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 1.4e-26 122.9 85 72.9
AUR62005621 Chenopodium quinoa HOM05D006087 ORTHO05D007479 3.2e-26 121.7 92 64.1
MD05G1114700 Malus domestica HOM05D006087 ORTHO05D007479 7.2e-26 120.6 78 70.5
ECA233G2512 Erigeron canadensis HOM05D006443 ORTHO05D007797 9.4e-26 120.2 81 70.4
arahy.Tifrunner.gnm1.ann1.1Z01XL Arachis hypogaea HOM05D006087 ORTHO05D007479 1.6e-25 119.4 101 65.3
AUR62028927 Chenopodium quinoa HOM05D006087 ORTHO05D007479 1.6e-25 119.4 92 64.1
MBI11_g44422_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 2.7e-25 118.6 95 65.3
Pp3c18_21810 Physcomitrium patens HOM05D006087 ORTHO05D007479 4.6e-25 117.9 101 60.4
Sed0007875 Sechium edule HOM05D006087 ORTHO05D007479 1.0e-24 116.7 95 57.9
Pp3c22_5660 Physcomitrium patens HOM05D006087 ORTHO05D007479 5.1e-24 114.4 104 56.7
ClCG08G017160 Citrullus lanatus HOM05D006087 ORTHO05D007479 6.7e-24 114.0 95 60.0
Migut.E00016 Erythranthe guttata HOM05D006087 ORTHO05D007479 1.5e-23 112.8 95 58.9
MSTRG.8005 Avicennia marina HOM05D006087 ORTHO05D007479 2.0e-23 112.5 96 62.5
CsaV3_2G025430 Cucumis sativus L. HOM05D006087 ORTHO05D007479 4.3e-23 111.3 79 69.6
Pp3c21_520 Physcomitrium patens HOM05D006087 ORTHO05D007479 9.7e-23 110.2 98 57.1
HPP92_024307 Vanilla planifolia HOM05D006087 ORTHO05D007479 1.1e-21 106.7 94 62.8
MBI11_g05327_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 2.4e-21 105.5 65 76.9
Pp3c14_11460 Physcomitrium patens HOM05D006087 ORTHO05D007479 2.4e-21 105.5 102 53.9
HPP92_024290 Vanilla planifolia HOM05D006087 ORTHO05D007479 2.4e-21 105.5 95 63.2
Pp3c17_7480 Physcomitrium patens HOM05D006087 ORTHO05D007479 3.6e-17 91.7 98 46.9
Hma1.2p1_0349F.1_g132260 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 1.3e-14 83.2 97 54.6
Zm00001eb241730 Zea mays HOM05D006087 ORTHO05D007479 1.1e-13 80.1 95 44.2
Os02g0506600 Oryza sativa ssp. japonica HOM05D006087 ORTHO05D007479 1.8e-13 79.3 98 45.9
Zm00001eb180950 Zea mays HOM05D006087 ORTHO05D007479 1.8e-13 79.3 100 44.0
Cre10.g432100 Chlamydomonas reinhardtii HOM05D006087 ORTHO05D007479 3.8e-11 71.6 86 45.3
MD16G1189100 Malus domestica HOM05D006087 ORTHO05D007479 2.1e-09 65.9 40 67.5
CDE05G3495 Ceratophyllum demersum HOM05D006087 ORTHO05D007479 6.1e-09 64.3 56 58.9
Zm00001eb421040 Zea mays HOM05D006087 ORTHO05D007479 5.2e-08 61.2 99 38.4
Oeu016235.1 Olea europaea HOM05D006087 ORTHO05D007479 8.2e-06 53.9 41 70.7


User provided reference genes

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