Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 2.4e-78 295.4 149 100.0
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 1.0e-76 290.0 149 98.0
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 2.9e-76 288.5 149 97.3
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 6.3e-71 270.8 149 89.3
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 1.7e-60 236.1 148 76.4
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 5.6e-59 231.1 150 74.0
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 5.6e-59 231.1 150 74.0
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 5.6e-59 231.1 150 74.0
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 2.8e-58 228.8 150 74.7
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 3.6e-58 228.4 150 76.0
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 6.1e-58 227.6 150 73.3
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 8.0e-58 227.3 150 72.7
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 8.0e-58 227.3 150 72.7
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 3.0e-57 225.3 150 72.0
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 3.0e-57 225.3 150 74.0
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 5.2e-57 224.6 150 72.0
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 5.2e-57 224.6 150 72.0
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 6.8e-57 224.2 150 72.0
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 8.9e-57 223.8 149 71.8
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 1.2e-56 223.4 150 72.0
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 1.2e-56 223.4 149 73.2
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 1.5e-56 223.0 148 74.3
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.0e-56 222.6 149 71.1
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 2.0e-56 222.6 150 72.7
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.6e-56 222.2 150 70.7
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.6e-56 222.2 150 71.3
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 3.4e-56 221.9 150 71.3
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 3.4e-56 221.9 150 73.3
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 5.7e-56 221.1 148 71.6
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 1.3e-55 219.9 150 72.0
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 1.3e-55 219.9 150 73.3
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 1.7e-55 219.5 150 71.3
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 2.2e-55 219.2 146 72.6
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 2.2e-55 219.2 149 69.8
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 2.2e-55 219.2 150 71.3
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 2.9e-55 218.8 150 72.7
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 2.9e-55 218.8 150 70.7
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 3.7e-55 218.4 150 68.0
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 3.7e-55 218.4 151 70.9
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 1.1e-54 216.9 162 67.3
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 1.4e-54 216.5 148 71.6
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 1.8e-54 216.1 149 69.1
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 1.8e-54 216.1 147 72.1
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.8e-54 216.1 150 68.7
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.4e-54 215.7 150 69.3
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 3.2e-54 215.3 146 69.9
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 4.1e-54 214.9 146 71.9
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 5.4e-54 214.5 150 69.3
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 7.0e-54 214.2 147 71.4
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 7.0e-54 214.2 148 68.2
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 9.2e-54 213.8 147 68.0
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 1.2e-53 213.4 148 68.9
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.6e-53 213.0 150 68.7
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 1.6e-53 213.0 146 68.5
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.6e-53 213.0 147 68.7
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.0e-53 212.6 150 68.7
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 2.0e-53 212.6 147 70.7
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 3.5e-53 211.8 150 66.7
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 4.6e-53 211.5 151 66.9
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 4.6e-53 211.5 147 67.3
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 4.6e-53 211.5 149 67.8
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 4.6e-53 211.5 146 71.2
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 6.0e-53 211.1 147 69.4
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 7.8e-53 210.7 148 68.2
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 7.8e-53 210.7 146 67.8
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 7.8e-53 210.7 146 70.5
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 3.0e-52 208.8 147 70.1
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 3.0e-52 208.8 144 70.8
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.0e-52 208.8 145 70.3
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.0e-52 208.8 145 70.3
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.0e-52 208.8 144 70.8
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.0e-52 208.8 144 70.8
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 3.9e-52 208.4 150 68.0
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 3.9e-52 208.4 146 66.4
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 5.0e-52 208.0 147 68.0
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 6.6e-52 207.6 144 70.1
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 8.6e-52 207.2 147 68.7
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 8.6e-52 207.2 144 70.1
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 8.6e-52 207.2 147 69.4
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 1.1e-51 206.8 147 68.0
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 1.5e-51 206.5 146 67.1
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.9e-51 206.1 150 67.3
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 1.9e-51 206.1 182 58.2
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 2.5e-51 205.7 146 67.8
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 3.3e-51 205.3 146 65.8
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 3.3e-51 205.3 146 67.1
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 3.3e-51 205.3 146 66.4
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 3.3e-51 205.3 144 69.4
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 4.3e-51 204.9 146 65.8
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 4.3e-51 204.9 143 67.8
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 5.6e-51 204.5 154 64.3
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 7.3e-51 204.1 131 72.5
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.2e-50 203.4 147 66.0
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 1.2e-50 203.4 147 66.0
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.2e-50 203.4 147 65.3
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 1.6e-50 203.0 150 67.3
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 2.8e-50 202.2 150 67.3
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 4.7e-50 201.4 147 67.3
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 4.7e-50 201.4 147 65.3
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 1.1e-49 200.3 157 61.8
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 1.4e-49 199.9 146 67.1
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 1.8e-49 199.5 147 66.0
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 3.1e-49 198.7 158 61.4
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 1.2e-48 196.8 147 63.9
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 1.2e-48 196.8 147 64.6
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 2.6e-48 195.7 149 63.8
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 4.4e-48 194.9 147 63.3
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 5.8e-48 194.5 147 66.7
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 5.8e-48 194.5 161 60.2
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 6.4e-47 191.0 149 61.1
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 1.9e-46 189.5 147 64.6
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 4.1e-46 188.3 150 59.3
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.3e-44 183.3 143 61.5
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 1.7e-44 183.0 141 62.4
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.3e-44 182.6 170 57.6
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 3.0e-44 182.2 219 47.0
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 1.1e-43 180.3 193 52.3
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 2.5e-43 179.1 149 60.4
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 3.3e-43 178.7 149 59.1
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 5.6e-43 177.9 135 62.2
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 1.6e-42 176.4 147 59.9
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 2.8e-42 175.6 147 63.3
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 3.6e-42 175.3 141 61.0
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 4.7e-42 174.9 140 58.6
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 8.1e-42 174.1 141 60.3
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 8.1e-42 174.1 140 57.9
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 1.4e-41 173.3 150 54.7
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 1.4e-41 173.3 150 54.7
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 2.3e-41 172.6 140 58.6
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 1.2e-40 170.2 143 55.9
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 1.2e-40 170.2 143 55.9
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 1.2e-40 170.2 143 55.9
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 1.5e-40 169.9 142 62.0
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 9.9e-40 167.2 140 56.4
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.9e-39 165.6 140 56.4
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 3.7e-39 165.2 146 56.2
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 4.9e-39 164.9 140 55.0
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 2.7e-37 159.1 107 71.0
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 4.6e-37 158.3 146 56.2
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 5.6e-35 151.4 148 55.4
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 7.3e-35 151.0 129 59.7
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 7.3e-35 151.0 129 59.7
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 2.1e-34 149.4 105 65.7
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 6.2e-34 147.9 143 51.0
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 8.1e-34 147.5 108 64.8
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 8.1e-34 147.5 108 64.8
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 5.2e-33 144.8 99 69.7
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 7.6e-32 141.0 89 73.0
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 3.8e-31 138.7 103 66.0
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 4.1e-30 135.2 142 47.2
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.1e-29 132.9 133 53.4
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 6.0e-29 131.3 105 60.0
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.7e-28 129.8 89 69.7
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 5.1e-28 128.3 89 69.7
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 1.2e-26 123.6 146 46.6
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 6.9e-25 117.9 80 66.2
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 8.4e-23 110.9 132 40.2
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 1.1e-22 110.5 86 57.0
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 9.3e-22 107.5 91 53.8
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.2e-21 107.1 103 49.5
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 1.0e-20 104.0 138 37.0
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 1.3e-20 103.6 142 40.1
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 9.0e-17 90.9 73 60.3
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 9.0e-17 90.9 136 30.9
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 3.2e-14 82.4 52 71.2
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 3.2e-14 82.4 147 29.3
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 3.5e-13 79.0 101 43.6
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 6.0e-13 78.2 80 48.8
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 2.3e-12 76.3 87 44.8
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 2.3e-12 76.3 104 31.7
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 1.5e-11 73.6 44 72.7
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 2.1e-10 69.7 129 27.1
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 5.3e-09 65.1 140 26.4
Cre12.g551900 Chlamydomonas reinhardtii HOM05D003922 ORTHO05D004492 2.2e-07 59.7 134 26.9
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 6.4e-07 58.2 46 54.3
AL1G15650 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 3.2e-06 55.8 80 40.0


User provided reference genes

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