Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011834.2 Cucumis melo HOM05D006764 ORTHO05D008516 3.4e-189 664.8 338 100.0
CsaV3_5G029880 Cucumis sativus L. HOM05D006764 ORTHO05D008516 2.6e-181 638.6 339 96.5
ClCG11G013370 Citrullus lanatus HOM05D006764 ORTHO05D008516 3.9e-177 624.8 338 93.2
Manes.07G022500 Manihot esculenta HOM05D006764 ORTHO05D008516 2.7e-133 479.2 341 70.7
Prupe.1G576600 Prunus persica HOM05D006764 ORTHO05D008516 3.2e-131 472.2 338 70.4
CiPaw.05G051400 Carya illinoinensis HOM05D006764 ORTHO05D008516 8.8e-129 464.2 337 68.5
Potri.004G222300 Populus trichocarpa HOM05D006764 ORTHO05D008516 1.5e-128 463.4 340 69.1
MD08G1240100 Malus domestica HOM05D006764 ORTHO05D008516 7.5e-128 461.1 338 68.0
GSVIVG01023281001 Vitis vinifera HOM05D006764 ORTHO05D008516 3.7e-127 458.8 329 70.5
Dinv01845 Davidia involucrata HOM05D006764 ORTHO05D008516 6.3e-127 458.0 340 68.2
Gohir.A04G130100 Gossypium hirsutum HOM05D006764 ORTHO05D008516 9.2e-126 454.1 340 66.5
TAR628G0031 Trochodendron aralioides HOM05D006764 ORTHO05D008516 1.3e-124 450.3 327 70.0
Atru.chr6.751 Acer truncatum HOM05D006764 ORTHO05D008516 1.7e-124 449.9 336 69.0
Gorai.012G166600 Gossypium raimondii HOM05D006764 ORTHO05D008516 2.3e-124 449.5 340 65.6
Gohir.D04G175300 Gossypium hirsutum HOM05D006764 ORTHO05D008516 3.8e-124 448.7 340 65.3
MD15G1432200 Malus domestica HOM05D006764 ORTHO05D008516 5.0e-124 448.4 336 66.7
Thecc.02G025400 Theobroma cacao HOM05D006764 ORTHO05D008516 4.3e-123 445.3 340 65.9
Actinidia39013 Actinidia chinensis HOM05D006764 ORTHO05D008516 3.6e-122 442.2 333 67.9
QL02p099872 Quercus lobata HOM05D006764 ORTHO05D008516 1.4e-121 440.3 337 65.3
Medtr2g006100 Medicago truncatula HOM05D006764 ORTHO05D008516 3.4e-120 435.6 325 66.8
Ciclev10001742m.g Citrus clementina HOM05D006764 ORTHO05D008516 4.4e-120 435.3 333 66.4
Psat1g221840 Pisum sativum HOM05D006764 ORTHO05D008516 5.7e-120 434.9 325 65.8
Glyma.12G168200 Glycine max HOM05D006764 ORTHO05D008516 4.1e-118 428.7 326 65.3
Glyma.16G004200 Glycine max HOM05D006764 ORTHO05D008516 4.1e-118 428.7 327 64.8
Lj6g0021331 Lotus japonicus HOM05D006764 ORTHO05D008516 4.1e-118 428.7 321 67.3
Rhsim11G0125600 Rhododendron simsii HOM05D006764 ORTHO05D008516 1.3e-116 423.7 333 65.5
THA.LOC104807147 Tarenaya hassleriana HOM05D006764 ORTHO05D008516 1.3e-116 423.7 335 63.6
RcHm_v2.0_Chr7g0220831 Rosa chinensis HOM05D006764 ORTHO05D008516 1.7e-116 423.3 333 64.6
TPR.G2075 Trifolium pratense HOM05D006764 ORTHO05D008516 3.9e-116 422.2 325 64.9
VMungo0540G1274 Vigna mungo HOM05D006764 ORTHO05D008516 4.3e-115 418.7 328 63.7
Eucgr.G00355 Eucalyptus grandis HOM05D006764 ORTHO05D008516 7.3e-115 417.9 330 64.8
Phvul.006G217900 Phaseolus vulgaris HOM05D006764 ORTHO05D008516 1.6e-114 416.8 326 63.5
Sabra01G0168400 Salix brachista HOM05D006764 ORTHO05D008516 3.6e-114 415.6 340 63.8
FvH4_5g28680 Fragaria vesca HOM05D006764 ORTHO05D008516 4.7e-114 415.2 333 64.6
PGR042G2798 Punica granatum HOM05D006764 ORTHO05D008516 4.7e-114 415.2 312 66.3
CSS0013576 Camellia sinensis var. sinensis HOM05D006764 ORTHO05D008516 3.4e-112 409.1 332 64.2
Sc16g0001680 Simmondsia chinensis HOM05D006764 ORTHO05D008516 5.8e-112 408.3 325 64.6
Nn5g27693 Nelumbo nucifera HOM05D006764 ORTHO05D008516 7.5e-112 407.9 318 64.8
AL6G41260 Arabidopsis lyrata HOM05D006764 ORTHO05D008516 3.7e-111 405.6 319 64.9
CARHR260060 Cardamine hirsuta HOM05D006764 ORTHO05D008516 3.7e-111 405.6 320 64.7
arahy.Tifrunner.gnm1.ann1.0E87YT Arachis hypogaea HOM05D006764 ORTHO05D008516 6.4e-111 404.8 317 63.4
arahy.Tifrunner.gnm1.ann1.FMX4TW Arachis hypogaea HOM05D006764 ORTHO05D008516 4.1e-110 402.1 317 63.1
EL10Ac6g14065 Beta vulgaris HOM05D006764 ORTHO05D008516 1.6e-109 400.2 336 61.6
HanXRQChr10g0294521 Helianthus annuus HOM05D006764 ORTHO05D008516 6.0e-109 398.3 341 60.7
AT4G06676 Arabidopsis thaliana HOM05D006764 ORTHO05D008516 7.8e-109 397.9 320 64.7
Sed0008550 Sechium edule HOM05D000755 ORTHO05D000642 3.0e-108 396.0 276 77.5
ECA234G3405 Erigeron canadensis HOM05D006764 ORTHO05D008516 3.9e-108 395.6 340 60.3
CANSAT54G1059 Cannabis sativa HOM05D006764 ORTHO05D008516 2.5e-107 392.9 323 61.3
Cc02_g22970 Coffea canephora HOM05D006764 ORTHO05D008516 5.6e-107 391.7 322 61.8
Lalb_Chr18g0061021 Lupinus albus HOM05D006764 ORTHO05D008516 1.2e-106 390.6 323 62.8
Carub.0006s2639 Capsella rubella HOM05D006764 ORTHO05D008516 4.7e-106 388.7 324 63.0
Solyc10g044910.2 Solanum lycopersicum HOM05D006764 ORTHO05D008516 4.7e-106 388.7 335 59.1
Sopen10g013910 Solanum pennellii HOM05D006764 ORTHO05D008516 1.8e-105 386.7 335 59.1
TWI59G0639 Tripterygium wilfordii HOM05D006764 ORTHO05D008516 1.8e-105 386.7 338 60.4
BcaB01g01263 Brassica carinata HOM05D006764 ORTHO05D008516 4.0e-105 385.6 316 62.0
PSO170G2545 Papaver somniferum HOM05D006764 ORTHO05D008516 4.4e-104 382.1 332 59.0
BraA09t38619Z Brassica rapa HOM05D006764 ORTHO05D008516 1.7e-103 380.2 317 61.5
BcaC04g20869 Brassica carinata HOM05D006764 ORTHO05D008516 5.4e-102 375.2 316 60.8
Aqoxy6G00131 Aquilegia oxysepala HOM05D006764 ORTHO05D008516 4.6e-101 372.1 331 54.7
HPP92_009268 Vanilla planifolia HOM05D006764 ORTHO05D008516 1.2e-98 364.0 325 57.2
vmacro01728 Vaccinium macrocarpon HOM05D006764 ORTHO05D008516 1.6e-98 363.6 276 66.7
Aa31LG3G14080 Aethionema arabicum HOM05D006764 ORTHO05D008516 6.2e-98 361.7 352 56.5
MBI17_g21477_MAGBIO Magnolia biondii HOM05D006764 ORTHO05D008516 8.1e-98 361.3 322 57.8
Thhalv10028801m.g Eutrema salsugineum HOM05D006764 ORTHO05D008516 2.3e-97 359.8 316 60.1
A09p30490 Brassica napus HOM05D006764 ORTHO05D008516 5.2e-97 358.6 331 57.4
AUR62042713 Chenopodium quinoa HOM05D006764 ORTHO05D008516 3.2e-94 349.4 337 55.8
SGA_v2.0_scaffold304G47898 Striga asiatica HOM05D006764 ORTHO05D008516 5.4e-94 348.6 271 64.2
Nitab4.5_0000667g0120 Nicotiana tabacum HOM05D006764 ORTHO05D008516 2.1e-93 346.7 330 56.4
Oeu023412.2 Olea europaea HOM05D006764 ORTHO05D008516 6.6e-92 341.7 266 65.8
unitig_748.g8283 Utricularia gibba HOM05D006764 ORTHO05D008516 1.9e-91 340.1 317 57.1
COL.COLO4_17757 Corchorus olitorius HOM05D006764 ORTHO05D008516 3.6e-90 335.9 335 57.0
Migut.B00802 Erythranthe guttata HOM05D006764 ORTHO05D008516 6.9e-89 331.6 326 54.6
Duzib132G0537 Durio zibethinus HOM05D006764 ORTHO05D008516 1.3e-87 327.4 309 55.7
ATR0709G017 Amborella trichopoda HOM05D006764 ORTHO05D008516 1.4e-86 323.9 335 51.9
Sp6g10710 Schrenkiella parvula HOM05D006764 ORTHO05D008516 1.9e-86 323.6 314 56.4
CAN.G1108.5 Capsicum annuum HOM05D006764 ORTHO05D008516 2.7e-85 319.7 281 59.1
FAN13G1303 Fragaria x ananassa HOM05D006764 ORTHO05D008516 1.9e-83 313.5 299 56.9
Haze_01822 Corylus avellana HOM05D006764 ORTHO05D008516 2.8e-82 309.7 348 51.4
FAN18G3575 Fragaria x ananassa HOM05D006764 ORTHO05D008516 4.0e-81 305.8 272 60.3
Peaxi162Scf00002g00261 Petunia axillaris HOM05D006764 ORTHO05D008516 1.5e-80 303.9 323 51.7
FAN08G1175 Fragaria x ananassa HOM05D006764 ORTHO05D008516 4.5e-80 302.4 287 57.8
BolC9t56687H Brassica oleracea HOM05D006764 ORTHO05D008516 7.1e-78 295.0 250 59.2
Zm00001eb082660 Zea mays HOM05D006764 ORTHO05D008516 9.3e-78 294.7 324 50.0
SEGI_07291 Sequoiadendron giganteum HOM05D006764 ORTHO05D008516 2.1e-77 293.5 318 50.9
Ca_00050_v3 Cicer arietinum L. HOM05D006764 ORTHO05D008516 9.6e-75 284.6 242 59.9
C09p38380 Brassica napus HOM05D006764 ORTHO05D008516 2.1e-74 283.5 258 56.2
AUR62014213 Chenopodium quinoa HOM05D006764 ORTHO05D008516 2.4e-73 280.0 334 49.1
Lsat_1_v5_gn_5_103781 Lactuca sativa HOM05D006764 ORTHO05D008516 3.1e-73 279.6 242 61.2
Pp3c15_15530 Physcomitrium patens HOM05D006764 ORTHO05D008516 3.1e-73 279.6 305 49.2
PSO017G2259 Papaver somniferum HOM05D006764 ORTHO05D008516 2.6e-72 276.6 227 61.7
SHI04828 Sapria himalayana HOM05D006764 ORTHO05D008516 9.9e-72 274.6 258 58.5
Nitab4.5_0008098g0020 Nicotiana tabacum HOM05D006764 ORTHO05D008516 3.5e-69 266.2 336 46.4
SMO367G0572 Selaginella moellendorffii HOM05D006764 ORTHO05D008516 9.0e-65 251.5 305 49.2
Cpa.g.sc30.47 Carica papaya HOM05D006764 ORTHO05D008516 7.6e-64 248.4 157 77.1
Mapoly0025s0102 Marchantia polymorpha HOM05D006764 ORTHO05D008516 1.3e-63 247.7 315 42.9
SalBow7G3863 Salvia bowleyana HOM05D006764 ORTHO05D008516 2.7e-61 240.0 219 58.0
DCAR_029270 Daucus carota HOM05D006764 ORTHO05D008516 3.0e-52 209.9 340 39.4
AagrBONN_evm.TU.Sc2ySwM_228.3284 Anthoceros agrestis HOM05D006764 ORTHO05D008516 1.4e-41 174.5 214 43.0
Cfa005482 Carpinus fangiana HOM05D006764 ORTHO05D008516 1.4e-41 174.5 122 69.7
Hund12938 Selenicereus undatus HOM05D006764 ORTHO05D008516 5.0e-39 166.0 129 65.1
SEGI_28644 Sequoiadendron giganteum HOM05D006764 ORTHO05D008516 3.2e-38 163.3 181 48.6
FAN04G0462 Fragaria x ananassa HOM05D006764 ORTHO05D008516 5.2e-36 156.0 84 84.5
Lj5A261T39 Lonicera japonica HOM05D006764 ORTHO05D008516 4.8e-34 149.4 247 39.7
CBR_g19125 Chara braunii HOM05D006764 ORTHO05D008516 1.4e-33 147.9 182 44.5
Cre01.g032350 Chlamydomonas reinhardtii HOM05D006764 ORTHO05D008516 8.8e-28 128.6 328 30.8
Os04g0433200 Oryza sativa ssp. japonica HOM05D006764 ORTHO05D008516 1.2e-27 128.3 131 49.6
Hund29476 Selenicereus undatus HOM05D006764 ORTHO05D008516 1.0e-23 115.2 106 56.6
Hund29477 Selenicereus undatus HOM05D006764 ORTHO05D008516 1.0e-23 115.2 106 56.6
MCO04G067 Micromonas commoda HOM05D006764 ORTHO05D008516 2.2e-23 114.0 319 27.6
Nn6g34108 Nelumbo nucifera HOM05D006764 ORTHO05D008516 9.5e-14 82.0 124 43.5
Nn3g16387 Nelumbo nucifera HOM05D006764 ORTHO05D008516 4.4e-11 73.2 69 53.6
MBI17_g13541_MAGBIO Magnolia biondii HOM05D006764 ORTHO05D008516 1.6e-08 64.7 61 50.8
VMungo1309G2004 Vigna mungo HOM05D006764 ORTHO05D008516 4.5e-08 63.2 60 48.3
Nn1g06486 Nelumbo nucifera HOM05D027421 ORTHO05D008516 1.3e-07 61.6 75 44.0
Cc00_g10410 Coffea canephora HOM05D006764 ORTHO05D008516 3.8e-07 60.1 59 57.6


User provided reference genes

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