Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011824.2 Cucumis melo HOM05D007616 ORTHO05D008751 7.1e-105 384.0 206 100.0
ClCG11G013320 Citrullus lanatus HOM05D007616 ORTHO05D008751 1.9e-81 306.2 198 84.3
CsaV3_5G029830 Cucumis sativus L. HOM05D001654 ORTHO05D002773 6.1e-72 274.6 181 87.3
Sed0008181 Sechium edule HOM05D007616 ORTHO05D008751 5.9e-59 231.5 201 70.6
Gohir.D01G173800 Gossypium hirsutum HOM05D007616 ORTHO05D008751 1.5e-41 173.7 200 59.0
Gorai.002G215900 Gossypium raimondii HOM05D007616 ORTHO05D008751 1.5e-41 173.7 200 59.0
Gohir.A01G182700 Gossypium hirsutum HOM05D007616 ORTHO05D008751 9.4e-41 171.0 199 57.8
Thecc.02G023400 Theobroma cacao HOM05D007616 ORTHO05D008751 3.6e-40 169.1 200 57.0
CiPaw.05G005800 Carya illinoinensis HOM05D007616 ORTHO05D008751 8.0e-40 167.9 194 61.3
Duzib132G0975 Durio zibethinus HOM05D007616 ORTHO05D008751 2.3e-39 166.4 200 58.5
Eucgr.I02753 Eucalyptus grandis HOM05D007616 ORTHO05D008751 5.7e-38 161.8 196 58.2
Duzib248G0210 Durio zibethinus HOM05D007616 ORTHO05D008751 1.7e-37 160.2 190 60.0
COL.COLO4_17740 Corchorus olitorius HOM05D007616 ORTHO05D008751 8.3e-37 157.9 200 52.5
Potri.004G222800 Populus trichocarpa HOM05D007616 ORTHO05D008751 1.1e-36 157.5 209 51.7
Potri.003G009400 Populus trichocarpa HOM05D007616 ORTHO05D008751 9.1e-36 154.5 210 52.4
FvH4_6g51930 Fragaria vesca HOM05D007616 ORTHO05D008751 2.9e-34 149.4 206 52.9
FAN14G2995 Fragaria x ananassa HOM05D007616 ORTHO05D008751 3.8e-34 149.1 206 52.9
Atru.chr4.2705 Acer truncatum HOM05D007616 ORTHO05D008751 5.0e-34 148.7 189 57.1
CSS0021835 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 6.5e-34 148.3 182 54.9
CSS0006253 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 1.1e-33 147.5 182 54.4
Medtr2g005910 Medicago truncatula HOM05D007616 ORTHO05D008751 1.9e-33 146.7 200 51.5
Manes.10G119800 Manihot esculenta HOM05D007616 ORTHO05D008751 2.5e-33 146.4 187 52.9
arahy.Tifrunner.gnm1.ann1.D7HVAZ Arachis hypogaea HOM05D007616 ORTHO05D008751 3.3e-33 146.0 196 53.1
Prupe.1G577200 Prunus persica HOM05D007616 ORTHO05D008751 3.3e-33 146.0 225 49.3
FAN09G2205 Fragaria x ananassa HOM05D007616 ORTHO05D008751 9.5e-33 144.4 210 52.4
Glyma.12G167600 Glycine max HOM05D007616 ORTHO05D008751 6.1e-32 141.7 196 50.0
QL02p100178 Quercus lobata HOM05D007616 ORTHO05D008751 1.4e-31 140.6 235 45.1
Actinidia06472 Actinidia chinensis HOM05D007616 ORTHO05D008751 4.0e-31 139.0 202 51.0
Lj6g0028114 Lotus japonicus HOM05D007616 ORTHO05D008751 1.2e-30 137.5 245 45.7
MD08G1240500 Malus domestica HOM05D007616 ORTHO05D008751 2.6e-30 136.3 216 48.6
arahy.Tifrunner.gnm1.ann1.4HSG2Y Arachis hypogaea HOM05D007616 ORTHO05D008751 5.7e-30 135.2 200 50.5
Ca_00046_v3 Cicer arietinum L. HOM05D001654 ORTHO05D002773 5.7e-30 135.2 144 61.1
Manes.07G023000 Manihot esculenta HOM05D007616 ORTHO05D008751 5.7e-30 135.2 196 53.1
Sabra03G0004800 Salix brachista HOM05D007616 ORTHO05D008751 1.3e-29 134.0 196 50.5
Phvul.006G218400 Phaseolus vulgaris HOM05D007616 ORTHO05D008751 2.2e-29 133.3 179 52.5
VMungo0540G1916 Vigna mungo HOM05D007616 ORTHO05D008751 3.7e-29 132.5 180 51.7
TPR.G2142 Trifolium pratense HOM05D007616 ORTHO05D008751 4.9e-29 132.1 212 45.8
CiPaw.06G173100 Carya illinoinensis HOM05D007616 ORTHO05D008751 1.1e-28 131.0 200 47.5
MSTRG.20315 Avicennia marina HOM05D007616 ORTHO05D008751 1.8e-28 130.2 200 50.0
Nitab4.5_0002596g0080 Nicotiana tabacum HOM05D007616 ORTHO05D008751 1.8e-28 130.2 225 43.6
Oeu000131.1 Olea europaea HOM05D007616 ORTHO05D008751 1.8e-28 130.2 197 48.2
RcHm_v2.0_Chr2g0173411 Rosa chinensis HOM05D007616 ORTHO05D008751 1.8e-28 130.2 209 48.8
PSO170G4229 Papaver somniferum HOM05D007616 ORTHO05D008751 2.4e-28 129.8 230 43.0
Peaxi162Scf00011g00934 Petunia axillaris HOM05D007616 ORTHO05D008751 4.1e-28 129.0 225 48.9
Sopen01g046110 Solanum pennellii HOM05D007616 ORTHO05D008751 1.2e-27 127.5 193 50.3
PGSC0003DMG400024897 Solanum tuberosum HOM05D007616 ORTHO05D008751 1.6e-27 127.1 214 45.3
Psat1g223480 Pisum sativum HOM05D007616 ORTHO05D008751 2.0e-27 126.7 231 43.7
Solyc01g103700.3 Solanum lycopersicum HOM05D007616 ORTHO05D008751 2.0e-27 126.7 197 49.2
Aqoxy6G00124 Aquilegia oxysepala HOM05D007616 ORTHO05D008751 3.5e-27 125.9 206 45.1
CANSAT54G0672 Cannabis sativa HOM05D007616 ORTHO05D008751 3.5e-27 125.9 216 44.4
Nitab4.5_0000948g0040 Nicotiana tabacum HOM05D007616 ORTHO05D008751 5.9e-27 125.2 227 42.3
Lalb_Chr18g0061041 Lupinus albus HOM05D007616 ORTHO05D008751 1.0e-26 124.4 215 45.6
DCAR_025356 Daucus carota HOM05D007616 ORTHO05D008751 1.7e-26 123.6 207 45.9
ECA236G1993 Erigeron canadensis HOM05D007616 ORTHO05D008751 2.9e-26 122.9 135 58.5
Nn5g27765 Nelumbo nucifera HOM05D007616 ORTHO05D008751 5.0e-26 122.1 202 45.5
PSO782G2099 Papaver somniferum HOM05D007616 ORTHO05D008751 6.6e-26 121.7 231 40.7
MD15G1433700 Malus domestica HOM05D007616 ORTHO05D008751 1.5e-25 120.6 223 46.6
Rhsim05G0186200 Rhododendron simsii HOM05D007616 ORTHO05D008751 1.5e-25 120.6 195 45.1
THA.LOC104816807 Tarenaya hassleriana HOM05D007616 ORTHO05D008751 5.6e-25 118.6 250 41.6
Lsat_1_v5_gn_9_120740 Lactuca sativa HOM05D007616 ORTHO05D008751 2.8e-24 116.3 131 58.8
Sabra01G0168700 Salix brachista HOM05D007616 ORTHO05D008751 8.0e-24 114.8 197 44.2
Cc02_g23010 Coffea canephora HOM05D007616 ORTHO05D008751 6.8e-23 111.7 222 45.5
HPP92_005665 Vanilla planifolia HOM05D007616 ORTHO05D008751 8.9e-23 111.3 209 41.6
Migut.B00786 Erythranthe guttata HOM05D007616 ORTHO05D008751 2.6e-22 109.8 216 43.1
HanXRQChr06g0181301 Helianthus annuus HOM05D007616 ORTHO05D008751 4.4e-22 109.0 132 53.0
Sc20g0001190 Simmondsia chinensis HOM05D007616 ORTHO05D008751 1.3e-21 107.5 173 50.3
AUR62037671 Chenopodium quinoa HOM05D002239 ORTHO05D002408 1.4e-20 104.0 278 36.7
AUR62034500 Chenopodium quinoa HOM05D007616 ORTHO05D008751 3.2e-20 102.8 277 36.1
AL2G17970 Arabidopsis lyrata HOM05D012662 ORTHO05D008751 4.1e-20 102.4 234 37.2
BcaC02g10705 Brassica carinata HOM05D007616 ORTHO05D008751 5.4e-20 102.1 211 43.6
Cfa004508 Carpinus fangiana HOM05D007616 ORTHO05D008751 1.2e-19 100.9 215 42.8
CAN.G798.53 Capsicum annuum HOM05D007616 ORTHO05D008751 7.8e-19 98.2 216 40.3
Oeu058636.1 Olea europaea HOM05D007616 ORTHO05D008751 7.8e-19 98.2 119 52.9
SGA_v2.0_scaffold272G46374 Striga asiatica HOM05D007616 ORTHO05D008751 1.7e-18 97.1 205 38.5
ATR0090G002 Amborella trichopoda HOM05D007616 ORTHO05D008751 6.6e-18 95.1 186 41.9
Potri.019G021000 Populus trichocarpa HOM05D007616 ORTHO05D008751 6.6e-18 95.1 210 42.4
Haze_10065 Corylus avellana HOM05D001654 ORTHO05D002773 3.3e-17 92.8 189 43.4
A09p18580 Brassica napus HOM05D012662 ORTHO05D008751 1.2e-16 90.9 198 40.4
ECA240G3878 Erigeron canadensis HOM05D007616 ORTHO05D008751 1.4e-15 87.4 146 44.5
PGR142G0501 Punica granatum HOM05D007616 ORTHO05D008751 4.0e-15 85.9 127 51.2
vmacro19869 Vaccinium macrocarpon HOM05D007616 ORTHO05D008751 2.0e-14 83.6 95 61.1
Nn1g08457 Nelumbo nucifera HOM05D007616 ORTHO05D008751 7.5e-14 81.6 194 37.1
Rhsim05G0130500 Rhododendron simsii HOM05D007616 ORTHO05D008751 2.2e-13 80.1 111 57.7
C01p35720 Brassica napus HOM05D007616 ORTHO05D008751 3.7e-13 79.3 154 41.6
BolC1t03530H Brassica oleracea HOM05D007616 ORTHO05D008751 3.7e-13 79.3 154 41.6
Ah.06g187740 Amaranthus hybridus HOM05D007616 ORTHO05D008751 5.4e-12 75.5 117 47.0
Os11g0195800 Oryza sativa ssp. japonica HOM05D007616 ORTHO05D008751 1.6e-11 73.9 179 36.9
GSVIVG01023272001 Vitis vinifera HOM05D007616 ORTHO05D008751 2.7e-11 73.2 109 47.7
C04p26930 Brassica napus HOM05D007616 ORTHO05D008751 3.5e-11 72.8 118 51.7
BolC4t24105H Brassica oleracea HOM05D007616 ORTHO05D008751 3.5e-11 72.8 118 51.7
TWI14G0953 Tripterygium wilfordii HOM05D007616 ORTHO05D008751 3.5e-11 72.8 195 33.8
Dinv07475 Davidia involucrata HOM05D001654 ORTHO05D002773 1.3e-10 70.9 186 39.8
SalBow3G1194 Salvia bowleyana HOM05D007616 ORTHO05D008751 1.3e-10 70.9 98 51.0
Carub.0002s0656 Capsella rubella HOM05D012662 ORTHO05D008751 2.3e-10 70.1 213 33.3
FAN05G5322 Fragaria x ananassa HOM05D007616 ORTHO05D008751 2.5e-09 66.6 98 51.0
QL11p039511 Quercus lobata HOM05D007616 ORTHO05D008751 4.3e-09 65.9 44 70.5
unitig_21.g20913 Utricularia gibba HOM05D007616 ORTHO05D008751 2.8e-08 63.2 118 41.5
BcaC04g22113 Brassica carinata HOM05D012662 ORTHO05D008751 4.7e-08 62.4 97 44.3
C09p23200 Brassica napus HOM05D012662 ORTHO05D008751 4.7e-08 62.4 97 44.3
BolC9t55239H Brassica oleracea HOM05D012662 ORTHO05D008751 4.7e-08 62.4 97 44.3
Zm00001eb202050 Zea mays HOM05D007616 ORTHO05D008751 1.4e-07 60.8 247 28.3
Zm00001eb391910 Zea mays HOM05D036147 ORTHO05D008751 2.3e-07 60.1 130 36.9
Rhsim07G0246900 Rhododendron simsii HOM05D002661 ORTHO05D002786 3.1e-07 59.7 110 40.0
Zm00001eb243820 Zea mays HOM05D036147 ORTHO05D008751 4.0e-07 59.3 128 35.9
BraA09t37484Z Brassica rapa HOM05D012662 ORTHO05D008751 5.2e-07 58.9 198 33.8
MBI05_g15357_MAGBIO Magnolia biondii HOM05D002661 ORTHO05D002786 6.8e-07 58.5 191 30.9
AUR62003372 Chenopodium quinoa HOM05D002661 ORTHO05D002786 1.2e-06 57.8 98 40.8
Hma1.2p1_0427F.1_g150730 Hydrangea macrophylla HOM05D007616 ORTHO05D008751 1.2e-06 57.8 98 49.0
MD08G1013500 Malus domestica HOM05D002661 ORTHO05D002786 1.2e-06 57.8 106 40.6
SalBow7G2684 Salvia bowleyana HOM05D002661 ORTHO05D002786 1.2e-06 57.8 96 38.5
FAN20G0494 Fragaria x ananassa HOM05D002661 ORTHO05D002786 1.5e-06 57.4 99 41.4
Os02g0554200 Oryza sativa ssp. japonica HOM05D036147 ORTHO05D008751 1.5e-06 57.4 123 37.4
AUR62029460 Chenopodium quinoa HOM05D002661 ORTHO05D002786 2.6e-06 56.6 98 39.8
Haze_22627 Corylus avellana HOM05D002661 ORTHO05D002786 2.6e-06 56.6 97 40.2
Hma1.2p1_1108F.1_g257940 Hydrangea macrophylla HOM05D007616 ORTHO05D008751 2.6e-06 56.6 188 31.9
C02p33750 Brassica napus HOM05D002661 ORTHO05D002786 3.4e-06 56.2 84 42.9
Prupe.1G366100 Prunus persica HOM05D002661 ORTHO05D002786 4.4e-06 55.8 110 37.3
vmacro04348 Vaccinium macrocarpon HOM05D002661 ORTHO05D002786 4.4e-06 55.8 106 38.7
Ciclev10003995m.g Citrus clementina HOM05D007616 ORTHO05D008751 5.8e-06 55.5 36 72.2
Sp2g05500 Schrenkiella parvula HOM05D012662 ORTHO05D008751 7.5e-06 55.1 204 33.3


User provided reference genes

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