Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011810.2 Cucumis melo HOM05D007594 ORTHO05D009607 0.0e+00 1511.9 774 100.0
CsaV3_5G029660 Cucumis sativus L. HOM05D007594 ORTHO05D009607 0.0e+00 1313.9 824 84.7
ClCG11G013140 Citrullus lanatus HOM05D007594 ORTHO05D009607 0.0e+00 1131.3 826 73.1
Sed0005696 Sechium edule HOM05D007594 ORTHO05D009607 2.2e-252 875.9 828 60.1
Haze_02988 Corylus avellana HOM05D007594 ORTHO05D009607 1.6e-101 374.8 801 37.7
Prupe.2G044000 Prunus persica HOM05D007594 ORTHO05D009607 1.4e-84 318.5 863 33.1
MD00G1152500 Malus domestica HOM05D007594 ORTHO05D009607 3.7e-82 310.5 864 32.3
RcHm_v2.0_Chr1g0327541 Rosa chinensis HOM05D007594 ORTHO05D009607 2.7e-80 304.3 857 32.4
Dinv03295 Davidia involucrata HOM05D007594 ORTHO05D009607 5.1e-79 300.1 864 32.9
Atru.chr12.1243 Acer truncatum HOM05D007594 ORTHO05D009607 1.4e-73 282.0 866 32.0
TAR633G1990 Trochodendron aralioides HOM05D007594 ORTHO05D009607 5.1e-71 273.5 908 30.2
Duzib128G1040 Durio zibethinus HOM05D007594 ORTHO05D009607 9.6e-70 269.2 854 30.1
Potri.003G193100 Populus trichocarpa HOM05D007594 ORTHO05D009607 3.4e-67 260.8 863 31.3
CiPaw.13G016300 Carya illinoinensis HOM05D007594 ORTHO05D009607 2.9e-66 257.7 790 31.9
Thecc.10G140800 Theobroma cacao HOM05D007594 ORTHO05D009607 2.9e-66 257.7 833 29.9
CANSAT56G2828 Cannabis sativa HOM05D007594 ORTHO05D009607 1.0e-63 249.2 849 31.3
FvH4_7g03921 Fragaria vesca HOM05D007594 ORTHO05D009607 3.0e-63 247.7 854 29.3
FAN06G1277 Fragaria x ananassa HOM05D007594 ORTHO05D009607 3.9e-63 247.3 863 29.2
FAN01G0543 Fragaria x ananassa HOM05D007594 ORTHO05D009607 1.5e-62 245.4 815 31.3
FAN03G3082 Fragaria x ananassa HOM05D000688 ORTHO05D003888 7.3e-62 243.0 850 29.1
Glyma.11G170937 Glycine max HOM05D007594 ORTHO05D009607 7.3e-62 243.0 838 29.4
Lj3g0014217 Lotus japonicus HOM05D007594 ORTHO05D009607 3.6e-61 240.7 831 29.1
Hma1.2p1_1342F.1_g276950 Hydrangea macrophylla HOM05D007594 ORTHO05D009607 1.3e-58 232.3 844 30.3
Gorai.011G220800 Gossypium raimondii HOM05D007594 ORTHO05D009607 1.0e-55 222.6 701 31.1
Actinidia06215 Actinidia chinensis HOM05D007594 ORTHO05D009607 5.1e-55 220.3 865 28.2
Gohir.D10G197300 Gossypium hirsutum HOM05D007594 ORTHO05D009607 1.1e-54 219.2 691 31.7
VMungo1080G0650 Vigna mungo HOM05D007594 ORTHO05D009607 1.1e-54 219.2 877 27.9
Gohir.A10G189500 Gossypium hirsutum HOM05D007594 ORTHO05D009607 2.5e-54 218.0 688 31.5
Phvul.005G018200 Phaseolus vulgaris HOM05D007594 ORTHO05D009607 1.8e-52 211.8 863 27.5
GSVIVG01036598001 Vitis vinifera HOM05D007594 ORTHO05D009607 2.0e-51 208.4 657 32.1
vmacro13773 Vaccinium macrocarpon HOM05D007594 ORTHO05D009607 7.6e-51 206.5 849 29.1
Aqoxy1G00415 Aquilegia oxysepala HOM05D007594 ORTHO05D009607 9.9e-51 206.1 904 27.5
Manes.04G156000 Manihot esculenta HOM05D007594 ORTHO05D009607 3.8e-50 204.1 856 29.6
Medtr3g013490 Medicago truncatula HOM05D007594 ORTHO05D009607 1.4e-49 202.2 875 27.1
Lalb_Chr24g0402831 Lupinus albus HOM05D007594 ORTHO05D009607 1.9e-49 201.8 849 28.0
Hma1.2p1_1730F.1_g299670 Hydrangea macrophylla HOM05D007594 ORTHO05D009607 3.2e-49 201.1 733 29.9
Rhsim07G0071100 Rhododendron simsii HOM05D007594 ORTHO05D009607 3.9e-47 194.1 800 28.4
Ciclev10003355m.g Citrus clementina HOM05D007594 ORTHO05D009607 5.1e-47 193.7 740 28.5
arahy.Tifrunner.gnm1.ann1.IJ2ITM Arachis hypogaea HOM05D007594 ORTHO05D009607 6.7e-47 193.4 856 26.4
DCAR_006600 Daucus carota HOM05D007594 ORTHO05D009607 1.9e-46 191.8 885 27.3
arahy.Tifrunner.gnm1.ann1.HR2C9L Arachis hypogaea HOM05D007594 ORTHO05D009607 2.5e-46 191.4 854 26.1
Nitab4.5_0004215g0020 Nicotiana tabacum HOM05D007594 ORTHO05D009607 9.6e-46 189.5 833 28.5
MBI13_g07373_MAGBIO Magnolia biondii HOM05D007594 ORTHO05D009607 4.8e-45 187.2 900 27.1
Nitab4.5_0004358g0020 Nicotiana tabacum HOM05D007594 ORTHO05D009607 4.8e-45 187.2 834 29.0
Nn7g36922 Nelumbo nucifera HOM05D007594 ORTHO05D009607 1.1e-44 186.0 834 28.5
TWI63G1387 Tripterygium wilfordii HOM05D007594 ORTHO05D009607 1.1e-44 186.0 774 29.2
Ca_14092_v3 Cicer arietinum L. HOM05D007594 ORTHO05D009607 1.5e-43 182.2 821 27.3
Hund03165 Selenicereus undatus HOM05D007594 ORTHO05D009607 1.5e-43 182.2 927 27.3
Hund03166 Selenicereus undatus HOM05D007594 ORTHO05D009607 1.7e-42 178.7 916 27.2
Peaxi162Scf02035g00032 Petunia axillaris HOM05D007594 ORTHO05D009607 4.3e-38 164.1 887 27.2
CAN.G897.9 Capsicum annuum HOM05D007594 ORTHO05D009607 3.7e-37 161.0 838 27.0
Ca_14091_v3 Cicer arietinum L. HOM05D007594 ORTHO05D009607 4.8e-37 160.6 781 27.7
TPR.G1438 Trifolium pratense HOM05D007594 ORTHO05D009607 4.8e-37 160.6 845 26.6
SGA_v2.0_scaffold124G33645 Striga asiatica HOM05D007594 ORTHO05D009607 1.1e-36 159.5 838 26.0
AUR62023865 Chenopodium quinoa HOM05D007594 ORTHO05D009607 1.8e-36 158.7 898 25.8
SalBow5G4015 Salvia bowleyana HOM05D007594 ORTHO05D009607 2.0e-35 155.2 832 25.7
EL10Ac3g05954 Beta vulgaris HOM05D007594 ORTHO05D009607 1.0e-34 152.9 866 25.3
Cc00_g06100 Coffea canephora HOM05D007594 ORTHO05D009607 1.1e-33 149.4 848 26.1
ECA246G0181 Erigeron canadensis HOM05D007594 ORTHO05D009607 4.2e-33 147.5 869 26.2
AUR62002319 Chenopodium quinoa HOM05D007594 ORTHO05D009607 9.3e-33 146.4 884 25.5
Solyc07g048100.3 Solanum lycopersicum HOM05D007594 ORTHO05D009607 2.7e-32 144.8 851 26.2
Psat5g215360 Pisum sativum HOM05D007594 ORTHO05D009607 3.6e-32 144.4 1043 24.4
HanXRQChr05g0146261 Helianthus annuus HOM05D007594 ORTHO05D009607 1.4e-31 142.5 800 27.5
Sopen07g024530 Solanum pennellii HOM05D007594 ORTHO05D009607 1.4e-31 142.5 769 26.3
THA.LOC104826746 Tarenaya hassleriana HOM05D007594 ORTHO05D009607 8.8e-31 139.8 642 27.9
Nn7g38492 Nelumbo nucifera HOM05D007594 ORTHO05D009607 8.2e-29 133.3 460 30.9
Os03g0811200 Oryza sativa ssp. japonica HOM05D007594 ORTHO05D009607 2.9e-26 124.8 666 26.9
ATR0307G127 Amborella trichopoda HOM05D007594 ORTHO05D009607 1.9e-25 122.1 993 24.3
Eucgr.G03206 Eucalyptus grandis HOM05D007594 ORTHO05D009607 1.9e-25 122.1 493 29.8
PSO339G5236 Papaver somniferum HOM05D007594 ORTHO05D009607 2.3e-23 115.2 670 26.0
PSO384G4678 Papaver somniferum HOM05D007594 ORTHO05D009607 3.3e-22 111.3 669 25.7
Aqoxy1G00417 Aquilegia oxysepala HOM05D007594 ORTHO05D009607 7.7e-19 100.1 460 27.0
Lsat_1_v5_gn_1_118241 Lactuca sativa HOM05D007594 ORTHO05D009607 1.0e-18 99.8 704 24.3
unitig_22.g5331 Utricularia gibba HOM05D007594 ORTHO05D009607 1.3e-18 99.4 638 23.8
Sc11g0006290 Simmondsia chinensis HOM05D007594 ORTHO05D009607 3.6e-16 91.3 345 28.1
Sc11g0006300 Simmondsia chinensis HOM05D007594 ORTHO05D009607 1.8e-15 89.0 397 28.0
Lj9P657T24 Lonicera japonica HOM05D007594 ORTHO05D009607 3.7e-13 81.3 161 34.2
PGSC0003DMG400006140 Solanum tuberosum HOM05D007594 ORTHO05D009607 2.6e-11 75.1 405 26.2
Zm00001eb062110 Zea mays HOM05D007594 ORTHO05D009607 3.2e-09 68.2 660 22.9
ATR0445G001 Amborella trichopoda HOM05D007594 ORTHO05D009607 1.6e-08 65.9 200 29.5
TPR.G20651 Trifolium pratense HOM05D007594 ORTHO05D009607 2.3e-07 62.0 183 30.1
SEGI_25891 Sequoiadendron giganteum HOM05D007594 ORTHO05D009607 5.2e-07 60.8 160 32.5
COL.COLO4_04921 Corchorus olitorius HOM05D007594 ORTHO05D009607 1.2e-06 59.7 60 41.7


User provided reference genes

Program Settings