Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011777.2 Cucumis melo HOM05D006588 ORTHO05D008272 7.3e-175 617.1 301 100.0
CsaV3_5G029260 Cucumis sativus L. HOM05D006588 ORTHO05D008272 8.3e-163 577.0 296 95.6
ClCG11G012860 Citrullus lanatus HOM05D006588 ORTHO05D008272 5.2e-149 531.2 295 89.5
Sed0004057 Sechium edule HOM05D006588 ORTHO05D008272 2.4e-138 495.7 296 83.8
Atru.chr7.1520 Acer truncatum HOM05D006588 ORTHO05D008272 2.5e-82 309.7 289 52.2
CSS0027625 Camellia sinensis var. sinensis HOM05D006588 ORTHO05D008272 1.2e-81 307.4 290 53.8
Thecc.09G094100 Theobroma cacao HOM05D006588 ORTHO05D008272 6.1e-81 305.1 290 52.8
Dinv36733 Davidia involucrata HOM05D006588 ORTHO05D008272 2.8e-78 296.2 275 55.3
Duzib150G1363 Durio zibethinus HOM05D006588 ORTHO05D008272 4.1e-77 292.4 290 50.7
Hma1.2p1_1074F.1_g254320 Hydrangea macrophylla HOM05D006588 ORTHO05D008272 1.5e-74 283.9 289 51.2
Gohir.D06G069300 Gossypium hirsutum HOM05D006588 ORTHO05D008272 3.3e-74 282.7 292 48.3
Gorai.010G080900 Gossypium raimondii HOM05D006588 ORTHO05D008272 3.3e-74 282.7 292 48.3
Haze_25873 Corylus avellana HOM05D006588 ORTHO05D008272 4.7e-73 278.9 291 50.2
Rhsim05G0031800 Rhododendron simsii HOM05D006588 ORTHO05D008272 6.8e-72 275.0 290 49.0
QL02p063459 Quercus lobata HOM05D006588 ORTHO05D008272 1.2e-71 274.2 290 49.3
MSTRG.10583 Avicennia marina HOM05D006588 ORTHO05D008272 1.7e-70 270.4 289 47.8
Cfa003132 Carpinus fangiana HOM05D006588 ORTHO05D008272 2.2e-70 270.0 284 50.0
Sc15g0003870 Simmondsia chinensis HOM05D006588 ORTHO05D008272 3.7e-70 269.2 294 46.6
TAR636G2459 Trochodendron aralioides HOM05D006588 ORTHO05D008272 4.9e-70 268.9 291 45.7
Ciclev10008264m.g Citrus clementina HOM05D006588 ORTHO05D008272 8.3e-70 268.1 290 47.2
Oeu018228.1 Olea europaea HOM05D006588 ORTHO05D008272 2.4e-69 266.5 290 48.3
Lj4C316T0 Lonicera japonica HOM05D006588 ORTHO05D008272 2.0e-68 263.5 293 48.5
CANSAT56G3648 Cannabis sativa HOM05D006588 ORTHO05D008272 2.7e-68 263.1 290 46.6
vmacro10821 Vaccinium macrocarpon HOM05D006588 ORTHO05D008272 2.7e-68 263.1 293 46.8
CANSAT56G2228 Cannabis sativa HOM05D006588 ORTHO05D008272 1.0e-67 261.2 290 46.6
VMungo0251G0425 Vigna mungo HOM05D006588 ORTHO05D008272 2.9e-67 259.6 292 44.9
Glyma.08G030700 Glycine max HOM05D006588 ORTHO05D008272 1.9e-66 256.9 292 44.9
Manes.03G030400 Manihot esculenta HOM05D006588 ORTHO05D008272 3.3e-66 256.1 292 45.5
Lalb_Chr09g0331761 Lupinus albus HOM05D006588 ORTHO05D008272 2.8e-65 253.1 289 43.9
Migut.K00574 Erythranthe guttata HOM05D006588 ORTHO05D008272 3.6e-65 252.7 292 46.2
Phvul.002G305400 Phaseolus vulgaris HOM05D006588 ORTHO05D008272 2.3e-64 250.0 292 43.8
Rhsim05G0031600 Rhododendron simsii HOM05D006588 ORTHO05D008272 4.0e-64 249.2 293 46.1
TWI34G1517 Tripterygium wilfordii HOM05D006588 ORTHO05D008272 4.0e-64 249.2 294 47.3
SalBow1G2363 Salvia bowleyana HOM05D006588 ORTHO05D008272 6.8e-64 248.4 291 44.7
SalBow1G2795 Salvia bowleyana HOM05D006588 ORTHO05D008272 6.8e-64 248.4 291 44.7
Cc06_g10980 Coffea canephora HOM05D006588 ORTHO05D008272 1.5e-63 247.3 289 45.0
SGA_v2.0_scaffold28G11949 Striga asiatica HOM05D006588 ORTHO05D008272 7.5e-63 245.0 295 44.4
AL7G22970 Arabidopsis lyrata HOM05D006588 ORTHO05D008272 1.3e-62 244.2 292 43.2
Thhalv10025196m.g Eutrema salsugineum HOM05D006588 ORTHO05D008272 1.7e-62 243.8 293 44.0
AT4G29420 Arabidopsis thaliana HOM05D006588 ORTHO05D008272 4.9e-62 242.3 293 43.7
CARHR237240 Cardamine hirsuta HOM05D006588 ORTHO05D008272 5.4e-61 238.8 293 43.7
Carub.0007s1112 Capsella rubella HOM05D006588 ORTHO05D008272 9.2e-61 238.0 292 43.2
Sp7g27300 Schrenkiella parvula HOM05D006588 ORTHO05D008272 9.2e-61 238.0 292 43.2
Aa31LG2G21010 Aethionema arabicum HOM05D006588 ORTHO05D008272 1.2e-60 237.7 292 43.8
Lj4g0006334 Lotus japonicus HOM05D006588 ORTHO05D008272 1.2e-60 237.7 295 43.4
CANSAT56G0790 Cannabis sativa HOM05D006588 ORTHO05D008272 3.5e-60 236.1 253 48.6
MBI04_g06220_MAGBIO Magnolia biondii HOM05D006588 ORTHO05D008272 4.6e-60 235.7 292 42.5
BraA01t00812Z Brassica rapa HOM05D006588 ORTHO05D008272 2.3e-59 233.4 292 42.8
BolC1t00966H Brassica oleracea HOM05D006588 ORTHO05D008272 3.9e-59 232.6 292 42.5
A01p08610 Brassica napus HOM05D006588 ORTHO05D008272 1.5e-58 230.7 292 42.5
CANSAT56G3251 Cannabis sativa HOM05D006588 ORTHO05D008272 1.9e-58 230.3 271 44.3
THA.LOC104814599 Tarenaya hassleriana HOM05D006588 ORTHO05D008272 1.9e-58 230.3 287 44.9
C01p10080 Brassica napus HOM05D006588 ORTHO05D008272 2.5e-58 229.9 292 42.1
BcaC09g51727 Brassica carinata HOM05D006588 ORTHO05D008272 5.6e-58 228.8 293 42.0
Nn6g35407 Nelumbo nucifera HOM05D006588 ORTHO05D008272 1.6e-57 227.3 281 44.1
Psat7g018800 Pisum sativum HOM05D006588 ORTHO05D008272 1.1e-56 224.6 298 40.3
Eucgr.C00929 Eucalyptus grandis HOM05D006588 ORTHO05D008272 1.8e-56 223.8 287 44.3
Lsat_1_v5_gn_7_39041 Lactuca sativa HOM05D006588 ORTHO05D008272 3.1e-56 223.0 291 40.5
ECA240G3150 Erigeron canadensis HOM05D006588 ORTHO05D008272 5.2e-56 222.2 292 42.1
TPR.G25442 Trifolium pratense HOM05D006588 ORTHO05D008272 2.0e-55 220.3 297 40.1
Ca_17389_v3 Cicer arietinum L. HOM05D006588 ORTHO05D008272 1.3e-54 217.6 294 40.5
unitig_699.g19309 Utricularia gibba HOM05D006588 ORTHO05D008272 8.3e-54 214.9 289 40.5
HanXRQChr09g0238251 Helianthus annuus HOM05D006588 ORTHO05D008272 9.2e-53 211.5 291 39.9
Gohir.A06G070700 Gossypium hirsutum HOM05D006588 ORTHO05D008272 2.1e-49 200.3 178 56.2
CiPaw.03G219600 Carya illinoinensis HOM05D006588 ORTHO05D008272 2.8e-49 199.9 162 62.3
Medtr8g101930 Medicago truncatula HOM05D006588 ORTHO05D008272 1.1e-48 198.0 289 39.1
Eucgr.L03123 Eucalyptus grandis HOM05D006588 ORTHO05D008272 5.2e-48 195.7 290 41.4
COL.COLO4_18239 Corchorus olitorius HOM05D006588 ORTHO05D008272 6.8e-48 195.3 215 44.2
Lsat_1_v5_gn_7_38780 Lactuca sativa HOM05D006588 ORTHO05D008272 2.0e-47 193.7 290 36.9
Lsat_1_v5_gn_7_38020 Lactuca sativa HOM05D006588 ORTHO05D008272 1.4e-45 187.6 290 36.9
Lsat_1_v5_gn_7_38040 Lactuca sativa HOM05D006588 ORTHO05D008272 3.2e-45 186.4 290 36.9
Lsat_1_v5_gn_7_38281 Lactuca sativa HOM05D006588 ORTHO05D008272 4.1e-45 186.0 295 36.9
Lsat_1_v5_gn_7_37981 Lactuca sativa HOM05D006588 ORTHO05D008272 3.5e-44 183.0 294 34.4
Lsat_1_v5_gn_7_38001 Lactuca sativa HOM05D006588 ORTHO05D008272 3.5e-44 183.0 294 34.4
Os01g0193500 Oryza sativa ssp. japonica HOM05D006588 ORTHO05D008272 1.3e-43 181.0 287 38.3
HPP92_003983 Vanilla planifolia HOM05D006588 ORTHO05D008272 3.1e-40 169.9 285 33.3
Zm00001eb121140 Zea mays HOM05D006588 ORTHO05D008272 7.6e-39 165.2 292 38.0
ATR0789G046 Amborella trichopoda HOM05D006588 ORTHO05D008272 1.3e-38 164.5 297 34.7
CDE06G2665 Ceratophyllum demersum HOM05D006588 ORTHO05D008272 2.2e-38 163.7 284 35.6
HanXRQChr03g0061101 Helianthus annuus HOM05D006588 ORTHO05D008272 9.2e-37 158.3 291 32.6
HanXRQChr03g0060991 Helianthus annuus HOM05D006588 ORTHO05D008272 1.0e-35 154.8 297 33.7
HanXRQChr03g0060631 Helianthus annuus HOM05D006588 ORTHO05D008272 1.5e-34 151.0 289 35.6
SEGI_25649 Sequoiadendron giganteum HOM05D006588 ORTHO05D008272 9.6e-34 148.3 298 33.2
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 1.4e-32 144.4 291 33.0
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 2.4e-32 143.7 295 31.5
HanXRQChr05g0142321 Helianthus annuus HOM05D006588 ORTHO05D008272 9.0e-32 141.7 223 39.5
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 1.2e-31 141.4 296 31.4
Actinidia39746 Actinidia chinensis HOM05D006588 ORTHO05D008272 2.9e-30 136.7 290 32.4
Nn7g36587 Nelumbo nucifera HOM05D006588 ORTHO05D008272 6.7e-19 99.0 79 64.6
Lsat_1_v5_gn_7_38181 Lactuca sativa HOM05D006588 ORTHO05D008272 1.1e-18 98.2 284 29.9
HanXRQChr03g0061001 Helianthus annuus HOM05D006588 ORTHO05D008272 9.6e-18 95.1 114 46.5
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 1.1e-16 91.7 159 36.5
Rhsim05G0031700 Rhododendron simsii HOM05D006588 ORTHO05D008272 7.6e-15 85.5 95 46.3
HanXRQChr03g0060621 Helianthus annuus HOM05D006588 ORTHO05D008272 5.5e-13 79.3 97 45.4
Pp3c1_20980 Physcomitrium patens HOM05D006588 ORTHO05D008272 3.3e-10 70.1 221 27.6
unitig_699.g19308 Utricularia gibba HOM05D006588 ORTHO05D008272 4.3e-10 69.7 142 32.4
Pp3c19_6110 Physcomitrium patens HOM05D006588 ORTHO05D008272 2.4e-08 63.9 128 29.7
Pp3c22_1680 Physcomitrium patens HOM05D006588 ORTHO05D008272 9.0e-08 62.0 133 30.8
Pp3c18_21550 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.5e-07 61.2 247 26.7
Pp3c13_20140 Physcomitrium patens HOM05D006588 ORTHO05D008272 2.6e-07 60.5 133 30.1
Pp3c21_900 Physcomitrium patens HOM05D006588 ORTHO05D008272 4.5e-07 59.7 120 30.0
Actinidia25278 Actinidia chinensis HOM05D006588 ORTHO05D008272 5.8e-07 59.3 40 75.0
Glyma.05G223602 Glycine max HOM05D006588 ORTHO05D008272 1.0e-06 58.5 101 34.7
Pp3c4_15950 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.3e-06 58.2 133 32.3
Pp3c21_980 Physcomitrium patens HOM05D006588 ORTHO05D008272 2.2e-06 57.4 117 29.9


User provided reference genes

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