Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 4.7e-277 957.2 475 100.0
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 7.9e-192 674.1 478 74.3
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 4.6e-184 648.3 474 73.0
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 1.8e-140 503.4 472 59.3
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 8.1e-104 381.7 487 46.0
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 5.3e-103 379.0 491 46.4
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 6.9e-103 378.6 482 46.7
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 1.3e-101 374.4 486 47.5
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 4.9e-101 372.5 491 46.4
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 3.2e-100 369.8 470 47.0
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 1.2e-99 367.9 483 46.4
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 1.0e-98 364.8 476 46.6
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 2.3e-98 363.6 478 46.7
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 2.3e-98 363.6 480 46.2
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 1.1e-97 361.3 485 45.4
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 2.5e-97 360.1 516 46.1
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 3.3e-97 359.8 488 46.9
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 4.3e-97 359.4 416 49.3
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 7.4e-97 358.6 431 49.0
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 1.1e-95 354.8 464 46.8
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 1.1e-95 354.8 433 48.0
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 1.1e-95 354.8 474 46.2
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 1.4e-95 354.4 491 45.2
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 1.8e-95 354.0 469 45.2
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 3.1e-95 353.2 417 48.4
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 6.9e-95 352.1 469 45.0
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 1.2e-94 351.3 478 46.4
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 2.0e-94 350.5 478 45.0
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 5.8e-94 349.0 472 45.8
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 5.8e-94 349.0 443 47.9
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 7.6e-94 348.6 380 51.8
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 2.2e-93 347.1 470 46.2
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 2.2e-93 347.1 422 46.9
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 4.9e-93 345.9 465 46.0
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 8.4e-93 345.1 365 52.9
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 1.4e-92 344.4 419 49.4
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 1.9e-92 344.0 460 46.1
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 7.1e-92 342.0 415 48.9
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 9.3e-92 341.7 488 43.4
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 1.2e-91 341.3 427 45.9
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 3.5e-91 339.7 488 44.7
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 6.0e-91 339.0 383 50.1
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 1.0e-90 338.2 482 42.3
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 2.3e-90 337.0 496 43.5
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 3.0e-90 336.7 487 45.0
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 3.9e-90 336.3 477 42.8
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 8.7e-90 335.1 483 44.9
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 8.7e-90 335.1 383 49.3
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 1.1e-89 334.7 484 44.0
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 1.5e-89 334.3 485 42.7
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 2.5e-89 333.6 375 49.9
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 2.5e-89 333.6 488 44.7
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 3.3e-89 333.2 480 42.5
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 4.3e-89 332.8 432 46.3
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 5.6e-89 332.4 481 44.5
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 1.6e-88 330.9 481 42.6
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 2.1e-88 330.5 474 44.5
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 3.7e-88 329.7 482 44.6
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 4.8e-88 329.3 403 47.1
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 4.8e-88 329.3 433 45.0
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 4.8e-88 329.3 457 45.3
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 6.2e-88 328.9 489 42.5
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 6.2e-88 328.9 478 44.6
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 6.2e-88 328.9 482 42.1
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 8.2e-88 328.6 483 41.6
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 8.2e-88 328.6 480 41.9
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 8.2e-88 328.6 480 41.9
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 8.2e-88 328.6 380 48.9
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 1.8e-87 327.4 410 46.1
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 1.8e-87 327.4 483 42.4
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 4.0e-87 326.2 478 42.7
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 6.9e-87 325.5 395 48.4
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 6.9e-87 325.5 364 50.5
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 9.0e-87 325.1 487 41.9
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 4.5e-86 322.8 363 49.6
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 4.5e-86 322.8 382 49.0
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 4.5e-86 322.8 386 49.0
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 7.6e-86 322.0 226 69.5
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 7.6e-86 322.0 386 48.7
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 8.4e-85 318.5 409 44.0
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 1.4e-84 317.8 482 41.1
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 4.2e-84 316.2 365 49.0
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 1.2e-83 314.7 362 49.7
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 1.6e-83 314.3 366 49.2
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 3.5e-83 313.2 493 41.2
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 7.9e-83 312.0 364 48.1
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 1.0e-82 311.6 370 47.8
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 2.3e-82 310.5 381 47.5
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 2.3e-82 310.5 495 40.2
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 3.3e-81 306.6 461 43.4
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 2.2e-80 303.9 376 47.6
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 2.2e-80 303.9 228 67.5
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 2.8e-80 303.5 377 46.9
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 3.7e-80 303.1 366 48.1
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 5.3e-79 299.3 369 46.1
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 6.9e-79 298.9 372 46.8
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 6.9e-79 298.9 487 41.3
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 1.7e-77 294.3 366 45.6
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 1.7e-77 294.3 351 47.6
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 8.5e-77 292.0 411 43.1
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 4.2e-76 289.7 365 45.8
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 6.1e-75 285.8 486 38.7
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 6.1e-75 285.8 365 45.8
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 1.0e-74 285.0 423 41.1
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 3.0e-74 283.5 381 44.6
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 1.1e-73 281.6 493 39.1
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 4.3e-73 279.6 333 48.6
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 9.1e-71 271.9 411 41.1
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 5.9e-70 269.2 365 43.8
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 1.9e-68 264.2 355 45.4
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 3.6e-67 260.0 370 43.5
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 9.1e-63 245.4 211 58.3
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 4.7e-59 233.0 374 39.3
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 4.1e-55 219.9 368 35.6
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 1.9e-52 211.1 293 44.7
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 4.2e-52 209.9 368 37.0
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 2.8e-48 197.2 418 34.9
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 3.7e-48 196.8 371 33.2
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 5.9e-46 189.5 282 37.9
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 2.7e-43 180.6 137 65.0
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 7.0e-31 139.4 142 56.3
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 8.6e-29 132.5 231 34.2
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 6.1e-27 126.3 310 31.6
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 1.6e-19 101.7 67 74.6
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 4.9e-16 90.1 48 85.4
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 1.9e-12 78.2 402 24.6
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 1.8e-10 71.6 46 71.7
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 5.2e-10 70.1 80 42.5


User provided reference genes

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