Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011729.2 Cucumis melo HOM05D005287 ORTHO05D006893 3.7e-130 469.9 784 100.0
ClCG02G013900 Citrullus lanatus HOM05D005287 ORTHO05D006893 1.3e-95 355.1 242 77.3
Sed0021424 Sechium edule HOM05D005287 ORTHO05D006893 2.6e-91 340.9 242 74.4
Dinv11806 Davidia involucrata HOM05D005287 ORTHO05D006893 6.3e-69 266.5 243 57.2
CsaV3_5G006270 Cucumis sativus L. HOM05D005287 ORTHO05D006893 8.5e-66 256.1 681 97.8
CiPaw.01G276400 Carya illinoinensis HOM05D005287 ORTHO05D006893 1.1e-65 255.8 225 57.8
CANSAT54G2917 Cannabis sativa HOM05D005287 ORTHO05D006893 1.4e-65 255.4 226 57.5
Cfa001595 Carpinus fangiana HOM05D005287 ORTHO05D006893 1.4e-65 255.4 231 57.6
QL08p056824 Quercus lobata HOM05D005287 ORTHO05D006893 4.2e-65 253.8 223 60.1
Cfa001592 Carpinus fangiana HOM05D005287 ORTHO05D006893 5.5e-65 253.4 231 57.1
Haze_16934 Corylus avellana HOM05D005287 ORTHO05D006893 1.2e-64 252.3 231 57.1
MD07G1179000 Malus domestica HOM05D005287 ORTHO05D006893 2.0e-62 245.0 226 55.8
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 2.0e-62 245.0 200 60.5
TAR628G1500 Trochodendron aralioides HOM05D005287 ORTHO05D006893 1.3e-61 242.3 222 56.8
MD01G1131000 Malus domestica HOM05D005287 ORTHO05D006893 2.2e-61 241.5 233 54.9
RcHm_v2.0_Chr1g0364091 Rosa chinensis HOM05D005287 ORTHO05D006893 7.7e-59 233.0 234 53.8
Lj5g0006814 Lotus japonicus HOM05D005287 ORTHO05D006893 6.5e-58 229.9 228 56.1
Manes.10G042800 Manihot esculenta HOM05D005287 ORTHO05D006893 2.5e-57 228.0 237 52.7
Aqoxy5G00866 Aquilegia oxysepala HOM05D005287 ORTHO05D006893 4.2e-57 227.3 225 49.3
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 2.1e-56 224.9 221 54.8
Rhsim06G0174700 Rhododendron simsii HOM05D005287 ORTHO05D006893 2.7e-56 224.6 225 52.4
Lalb_Chr06g0171161 Lupinus albus HOM05D005287 ORTHO05D006893 3.0e-55 221.1 233 53.2
Atru.chr12.633 Acer truncatum HOM05D005287 ORTHO05D006893 8.8e-55 219.5 234 52.1
FvH4_7g20132 Fragaria vesca HOM05D005287 ORTHO05D006893 3.3e-54 217.6 226 50.0
FAN03G3353 Fragaria x ananassa HOM05D005287 ORTHO05D006893 3.3e-54 217.6 238 49.6
FAN06G3074 Fragaria x ananassa HOM05D005287 ORTHO05D006893 3.3e-54 217.6 226 50.0
Sopen01g053530 Solanum pennellii HOM05D005287 ORTHO05D006893 4.4e-54 217.2 223 52.9
Prupe.2G218100 Prunus persica HOM05D005287 ORTHO05D006893 5.7e-54 216.9 233 51.5
FAN01G0321 Fragaria x ananassa HOM05D005287 ORTHO05D006893 7.5e-54 216.5 233 48.5
Hma1.2p1_0286F.1_g114160 Hydrangea macrophylla HOM05D005287 ORTHO05D006893 7.5e-54 216.5 233 54.1
Solyc01g111470.4 Solanum lycopersicum HOM05D005287 ORTHO05D006893 4.1e-52 210.7 223 52.0
Ciclev10033834m.g Citrus clementina HOM05D005287 ORTHO05D006893 5.9e-51 206.8 238 50.0
Lsat_1_v5_gn_9_67461 Lactuca sativa HOM05D005287 ORTHO05D006893 2.2e-50 204.9 244 46.7
Peaxi162Scf00016g01355 Petunia axillaris HOM05D005287 ORTHO05D006893 5.0e-50 203.8 226 48.7
CAN.G588.65 Capsicum annuum HOM05D005287 ORTHO05D006893 1.5e-49 202.2 218 52.3
Psat6g186200 Pisum sativum HOM05D005287 ORTHO05D006893 4.2e-49 200.7 226 52.7
Cc09_g02740 Coffea canephora HOM05D005287 ORTHO05D006893 5.5e-49 200.3 229 50.7
PSO566G0007 Papaver somniferum HOM05D005287 ORTHO05D006893 1.2e-48 199.1 228 48.2
DCAR_015277 Daucus carota HOM05D005287 ORTHO05D006893 6.8e-47 193.4 247 45.7
Medtr1g095880 Medicago truncatula HOM05D005287 ORTHO05D006893 6.8e-47 193.4 227 48.9
HanXRQChr09g0246581 Helianthus annuus HOM05D005287 ORTHO05D006893 2.0e-46 191.8 201 49.3
Aa31LG8G14080 Aethionema arabicum HOM05D005287 ORTHO05D006893 3.4e-46 191.0 225 48.4
SHI08859 Sapria himalayana HOM05D005287 ORTHO05D006893 7.5e-46 189.9 242 47.1
CARHR107150 Cardamine hirsuta HOM05D005287 ORTHO05D006893 2.2e-45 188.3 230 48.7
Sp3g30160 Schrenkiella parvula HOM05D005287 ORTHO05D006893 3.7e-45 187.6 229 48.0
Thhalv10022574m.g Eutrema salsugineum HOM05D005287 ORTHO05D006893 1.8e-44 185.3 229 48.0
AL3G49590 Arabidopsis lyrata HOM05D005287 ORTHO05D006893 2.4e-44 184.9 229 46.3
Potri.010G217600 Populus trichocarpa HOM05D005287 ORTHO05D006893 9.1e-44 183.0 249 45.0
AT2G16880 Arabidopsis thaliana HOM05D005287 ORTHO05D006893 1.2e-43 182.6 229 45.9
Ca_10593_v3 Cicer arietinum L. HOM05D005287 ORTHO05D006893 2.0e-43 181.8 227 46.3
Gohir.D04G136700 Gossypium hirsutum HOM05D005287 ORTHO05D006893 3.5e-43 181.0 226 44.2
A07p04270 Brassica napus HOM05D005287 ORTHO05D006893 7.7e-43 179.9 230 46.1
BraA07t28218Z Brassica rapa HOM05D005287 ORTHO05D006893 7.7e-43 179.9 230 46.1
BcaB03g16413 Brassica carinata HOM05D005287 ORTHO05D006893 1.0e-42 179.5 228 46.1
MSTRG.8165 Avicennia marina HOM05D005287 ORTHO05D006893 2.9e-42 177.9 226 48.2
EL10Ac2g03556 Beta vulgaris HOM05D005287 ORTHO05D006893 1.5e-41 175.6 160 55.6
Cpa.g.sc53.25 Carica papaya HOM05D005287 ORTHO05D006893 2.5e-41 174.9 224 46.0
DCAR_001539 Daucus carota HOM05D005287 ORTHO05D006893 7.2e-41 173.3 230 42.2
Oeu007697.1 Olea europaea HOM05D005287 ORTHO05D006893 1.2e-40 172.6 227 47.1
Thecc.10G068400 Theobroma cacao HOM05D005287 ORTHO05D006893 1.6e-40 172.2 225 43.1
BcaC06g36186 Brassica carinata HOM05D005287 ORTHO05D006893 3.6e-40 171.0 231 45.0
C07p06750 Brassica napus HOM05D005287 ORTHO05D006893 3.6e-40 171.0 231 45.0
SGA_v2.0_scaffold122G33244 Striga asiatica HOM05D005287 ORTHO05D006893 4.7e-40 170.6 227 45.8
BolC7t41098H Brassica oleracea HOM05D005287 ORTHO05D006893 1.4e-39 169.1 231 44.6
Gorai.012G120500 Gossypium raimondii HOM05D005287 ORTHO05D006893 1.8e-39 168.7 226 42.0
Gohir.A04G096900 Gossypium hirsutum HOM05D005287 ORTHO05D006893 2.3e-39 168.3 226 42.0
Sc06g0001790 Simmondsia chinensis HOM05D005287 ORTHO05D006893 2.3e-39 168.3 140 59.3
TWI15G0219 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 2.3e-39 168.3 229 45.9
Ah.16g108250 Amaranthus hybridus HOM05D005287 ORTHO05D006893 6.8e-39 166.8 161 52.8
arahy.Tifrunner.gnm1.ann1.JQA4UT Arachis hypogaea HOM05D005287 ORTHO05D006893 7.5e-38 163.3 230 46.1
Duzib114G0447 Durio zibethinus HOM05D005287 ORTHO05D006893 7.5e-38 163.3 226 41.6
arahy.Tifrunner.gnm1.ann1.NBNI0E Arachis hypogaea HOM05D005287 ORTHO05D006893 2.8e-37 161.4 230 44.8
PSO782G5729 Papaver somniferum HOM05D005287 ORTHO05D006893 4.9e-37 160.6 228 43.0
THA.LOC104805786 Tarenaya hassleriana HOM05D005287 ORTHO05D006893 8.3e-37 159.8 225 42.2
TWI63G1618 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 7.0e-36 156.8 226 45.6
arahy.Tifrunner.gnm1.ann1.VJ1NN4 Arachis hypogaea HOM05D005287 ORTHO05D006893 7.7e-35 153.3 244 42.6
AUR62027913 Chenopodium quinoa HOM05D005287 ORTHO05D006893 1.3e-34 152.5 158 51.3
AUR62043641 Chenopodium quinoa HOM05D005287 ORTHO05D006893 1.3e-34 152.5 158 51.3
arahy.Tifrunner.gnm1.ann1.VE562J Arachis hypogaea HOM05D005287 ORTHO05D006893 3.8e-34 151.0 232 45.3
PSO210G1683 Papaver somniferum HOM05D005287 ORTHO05D006893 5.0e-34 150.6 200 45.5
AUR62020786 Chenopodium quinoa HOM05D005287 ORTHO05D006893 7.3e-33 146.7 158 49.4
PSO210G6828 Papaver somniferum HOM05D005287 ORTHO05D006893 1.2e-32 146.0 198 46.0
Glyma.10G213600 Glycine max HOM05D005287 ORTHO05D006893 4.7e-32 144.1 233 39.5
HanXRQChr09g0246521 Helianthus annuus HOM05D005287 ORTHO05D006893 6.4e-29 133.7 151 46.4
SalBow6G0018 Salvia bowleyana HOM05D005287 ORTHO05D006893 1.2e-27 129.4 226 39.8
arahy.Tifrunner.gnm1.ann1.IRN669 Arachis hypogaea HOM05D005287 ORTHO05D006893 5.9e-27 127.1 138 53.6
Carub.0003s3067 Capsella rubella HOM05D005287 ORTHO05D006893 5.9e-27 127.1 173 43.9
arahy.Tifrunner.gnm1.ann1.TR9913 Arachis hypogaea HOM05D005287 ORTHO05D006893 5.0e-26 124.0 229 41.9
HPP92_023661 Vanilla planifolia HOM05D005287 ORTHO05D006893 7.3e-25 120.2 240 36.7
Migut.F01800 Erythranthe guttata HOM05D005287 ORTHO05D006893 2.9e-21 108.2 108 52.8
CSS0048123 Camellia sinensis var. sinensis HOM05D005287 ORTHO05D006893 3.7e-21 107.8 77 66.2
arahy.Tifrunner.gnm1.ann1.KW58JW Arachis hypogaea HOM05D005287 ORTHO05D006893 4.9e-21 107.5 222 40.1
Eucgr.G02802 Eucalyptus grandis HOM05D005287 ORTHO05D006893 1.6e-19 102.4 74 62.2
Actinidia03030 Actinidia chinensis HOM05D005287 ORTHO05D006893 7.8e-19 100.1 88 54.5
Lj1E922T3 Lonicera japonica HOM05D005287 ORTHO05D006893 3.3e-17 94.7 89 51.7
Actinidia38253 Actinidia chinensis HOM05D005287 ORTHO05D006893 5.6e-17 94.0 90 51.1
COL.COLO4_23731 Corchorus olitorius HOM05D005287 ORTHO05D006893 7.3e-17 93.6 77 57.1
TAR376G0736 Trochodendron aralioides HOM05D005287 ORTHO05D006893 9.5e-17 93.2 68 63.2
SalBow2G1472 Salvia bowleyana HOM05D005287 ORTHO05D006893 2.1e-16 92.0 99 48.5
arahy.Tifrunner.gnm1.ann1.W4HSG5 Arachis hypogaea HOM05D005287 ORTHO05D006893 2.8e-16 91.7 86 53.5
Sabra10G0168300 Salix brachista HOM05D005287 ORTHO05D006893 4.7e-16 90.9 88 54.5
FAN10G3161 Fragaria x ananassa HOM05D005287 ORTHO05D006893 4.0e-15 87.8 77 53.2
MBI16_g17961_MAGBIO Magnolia biondii HOM05D005287 ORTHO05D006893 5.2e-15 87.4 76 52.6
arahy.Tifrunner.gnm1.ann1.0HW3LW Arachis hypogaea HOM05D005287 ORTHO05D006893 1.5e-14 85.9 229 37.1
arahy.Tifrunner.gnm1.ann1.K64M7Y Arachis hypogaea HOM05D005287 ORTHO05D006893 1.7e-13 82.4 79 54.4
Nitab4.5_0000061g0180 Nicotiana tabacum HOM05D005287 ORTHO05D006893 8.3e-13 80.1 79 49.4
PGSC0003DMG401006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 1.9e-12 79.0 74 50.0
PGSC0003DMG402006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 1.9e-12 79.0 74 50.0
Phvul.007G091900 Phaseolus vulgaris HOM05D005287 ORTHO05D006893 2.4e-12 78.6 77 51.9
VMungo0720G1141 Vigna mungo HOM05D005287 ORTHO05D006893 2.1e-11 75.5 78 50.0
SEGI_19561 Sequoiadendron giganteum HOM05D007496 ORTHO05D009431 7.8e-11 73.6 223 28.7
PGSC0003DMG400004236 Solanum tuberosum HOM05D005287 ORTHO05D006893 1.3e-10 72.8 67 50.7
SalBow2G3146 Salvia bowleyana HOM05D005287 ORTHO05D006893 3.9e-10 71.2 127 34.6
arahy.Tifrunner.gnm1.ann1.C25YBK Arachis hypogaea HOM05D005287 ORTHO05D006893 8.6e-10 70.1 71 47.9
arahy.Tifrunner.gnm1.ann1.SZH9K7 Arachis hypogaea HOM05D005287 ORTHO05D006893 8.6e-10 70.1 71 47.9
Zm00001eb007770 Zea mays HOM05D005287 ORTHO05D006893 8.6e-10 70.1 220 28.2
arahy.Tifrunner.gnm1.ann1.V5M9Y5 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.1e-09 69.7 76 47.4
arahy.Tifrunner.gnm1.ann1.J60LCZ Arachis hypogaea HOM05D005287 ORTHO05D006893 1.5e-09 69.3 71 47.9
SalBow1G2833 Salvia bowleyana HOM05D005287 ORTHO05D006893 1.5e-09 69.3 67 50.7
SalBow4G1805 Salvia bowleyana HOM05D005287 ORTHO05D006893 1.5e-09 69.3 67 50.7
CDE01G0711 Ceratophyllum demersum HOM05D005287 ORTHO05D006893 2.1e-08 65.5 63 47.6
arahy.Tifrunner.gnm1.ann1.4R3XMY Arachis hypogaea HOM05D005287 ORTHO05D006893 2.8e-08 65.1 71 46.5
ECA232G3557 Erigeron canadensis HOM05D005287 ORTHO05D006893 5.2e-07 60.8 70 41.4
arahy.Tifrunner.gnm1.ann1.KL2II8 Arachis hypogaea HOM05D005287 ORTHO05D006893 7.6e-06 57.0 70 45.7
arahy.Tifrunner.gnm1.ann1.XEFQ2J Arachis hypogaea HOM05D005287 ORTHO05D006893 7.6e-06 57.0 70 45.7


User provided reference genes

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