Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 4.7e-121 438.0 234 100.0
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 3.2e-117 425.2 236 97.0
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 2.5e-114 415.6 235 93.6
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 8.6e-99 364.0 229 85.2
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 3.3e-82 308.9 232 69.0
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 3.3e-82 308.9 233 72.5
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 8.1e-81 304.3 234 71.8
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 3.1e-80 302.4 238 67.6
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 3.1e-80 302.4 240 70.4
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 5.3e-80 301.6 227 70.0
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 9.0e-80 300.8 228 70.6
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 1.2e-79 300.4 237 70.9
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 4.5e-79 298.5 226 69.9
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 7.6e-79 297.7 234 68.8
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 9.9e-79 297.4 203 72.9
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 1.3e-78 297.0 231 72.3
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 1.7e-78 296.6 226 69.0
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 1.7e-78 296.6 230 65.2
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 2.2e-78 296.2 230 67.0
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 2.2e-78 296.2 230 66.1
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 2.2e-78 296.2 200 73.0
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 2.2e-78 296.2 232 67.7
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 4.9e-78 295.0 230 70.0
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 8.4e-78 294.3 229 69.9
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 1.9e-77 293.1 232 64.7
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 3.2e-77 292.4 230 67.4
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 3.2e-77 292.4 231 68.8
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 3.2e-77 292.4 232 66.8
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 5.4e-77 291.6 231 68.8
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 7.1e-77 291.2 240 68.3
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 7.1e-77 291.2 232 65.5
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 7.1e-77 291.2 232 65.5
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.6e-76 290.0 231 68.4
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.6e-76 290.0 232 70.7
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 2.1e-76 289.7 230 66.1
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 2.7e-76 289.3 232 66.4
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 3.5e-76 288.9 232 64.7
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 4.6e-76 288.5 233 65.7
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 6.0e-76 288.1 216 72.7
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 7.9e-76 287.7 235 63.4
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 7.9e-76 287.7 203 75.9
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 7.9e-76 287.7 230 63.5
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 1.0e-75 287.3 233 63.5
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 1.8e-75 286.6 183 74.9
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 1.8e-75 286.6 239 67.4
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 2.3e-75 286.2 232 65.1
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 2.3e-75 286.2 232 72.4
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 3.0e-75 285.8 231 71.0
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 3.0e-75 285.8 233 71.7
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 3.9e-75 285.4 232 67.7
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 6.7e-75 284.6 227 68.7
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 8.7e-75 284.3 203 75.4
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 1.1e-74 283.9 235 67.2
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 4.3e-74 282.0 230 63.5
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 1.6e-73 280.0 228 65.8
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 1.6e-73 280.0 228 65.8
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 2.8e-73 279.3 241 65.6
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 2.8e-73 279.3 235 67.2
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 2.8e-73 279.3 229 62.4
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 3.6e-73 278.9 221 67.9
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 3.6e-73 278.9 228 67.1
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 4.8e-73 278.5 234 66.2
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 6.2e-73 278.1 228 67.1
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 6.2e-73 278.1 228 67.1
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 8.1e-73 277.7 223 69.1
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 8.1e-73 277.7 233 63.1
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 8.1e-73 277.7 227 63.4
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 1.1e-72 277.3 231 62.8
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 1.1e-72 277.3 234 68.4
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 1.4e-72 276.9 230 67.4
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 1.4e-72 276.9 230 67.4
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 3.1e-72 275.8 227 66.1
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 3.1e-72 275.8 233 61.4
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 4.0e-72 275.4 227 66.5
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 5.3e-72 275.0 228 66.7
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 5.3e-72 275.0 230 68.3
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 6.9e-72 274.6 229 65.9
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 1.2e-71 273.9 233 67.0
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 1.2e-71 273.9 228 66.7
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 1.5e-71 273.5 227 67.4
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 2.6e-71 272.7 228 67.5
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 5.8e-71 271.6 232 63.8
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 7.6e-71 271.2 227 65.6
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 9.9e-71 270.8 227 60.8
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 9.9e-71 270.8 228 62.7
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 2.2e-70 269.6 227 60.8
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 2.9e-70 269.2 227 64.8
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 2.9e-70 269.2 229 67.2
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 3.8e-70 268.9 211 63.5
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 4.9e-70 268.5 227 65.6
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.4e-69 266.2 219 61.2
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 7.1e-69 264.6 233 66.5
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 2.7e-68 262.7 180 74.4
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 4.6e-68 261.9 194 66.5
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 4.6e-68 261.9 181 74.6
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 7.9e-68 261.2 189 73.5
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 1.3e-67 260.4 227 65.6
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 9.6e-66 254.2 215 65.6
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.6e-65 253.4 176 76.1
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 4.8e-65 251.9 222 64.4
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 3.1e-64 249.2 230 62.6
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 4.5e-63 245.4 211 64.0
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 1.1e-61 240.7 183 69.4
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 4.2e-61 238.8 179 69.8
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 2.7e-60 236.1 179 70.4
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 2.1e-57 226.5 171 71.3
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.7e-54 216.9 139 74.8
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 9.7e-50 201.1 134 69.4
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 9.4e-45 184.5 186 55.9
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 8.8e-43 177.9 140 62.1
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.5e-42 177.2 140 61.4
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 1.5e-42 177.2 141 56.7
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 3.3e-42 176.0 140 60.7
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 5.7e-42 175.3 140 60.0
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 9.7e-42 174.5 140 60.0
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 9.7e-42 174.5 140 60.0
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 2.2e-41 173.3 137 61.3
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 2.8e-41 172.9 140 59.3
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 2.8e-41 172.9 140 60.0
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 2.8e-41 172.9 140 59.3
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 2.8e-41 172.9 140 59.3
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 6.3e-41 171.8 140 59.3
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 6.3e-41 171.8 140 59.3
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 2.4e-40 169.9 140 55.7
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 2.4e-40 169.9 140 58.6
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 4.1e-40 169.1 157 51.0
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 1.3e-38 164.1 244 43.0
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 3.2e-37 159.5 102 77.5
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 3.0e-35 152.9 103 78.6
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 3.9e-35 152.5 176 45.5
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 4.8e-33 145.6 105 74.3
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 9.4e-29 131.3 131 61.1
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.7e-28 129.8 175 42.9
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 4.7e-28 129.0 151 44.4
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.0e-27 127.9 185 40.5
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 1.8e-27 127.1 233 44.2
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 2.3e-27 126.7 146 44.5
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 5.7e-26 122.1 93 64.5
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 1.3e-25 120.9 131 55.0
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 7.7e-23 111.7 228 41.2
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 3.8e-22 109.4 126 48.4
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 2.5e-21 106.7 193 35.2
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 6.1e-20 102.1 197 34.0
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 1.4e-19 100.9 71 63.4
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 6.8e-19 98.6 172 34.3
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 2.6e-18 96.7 103 56.3
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.3e-17 94.4 67 70.1
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 3.1e-16 89.7 116 47.4
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.2e-12 77.8 109 40.4
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 1.0e-11 74.7 48 72.9
AUR62003563 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.9e-06 56.6 80 38.8
AUR62017877 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.9e-06 56.6 80 38.8


User provided reference genes

Program Settings