Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 0.0e+00 1356.3 684 100.0
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 0.0e+00 1132.1 853 72.0
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 4.2e-303 1044.3 684 76.5
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 7.9e-294 1013.4 556 93.3
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 6.1e-177 625.2 701 50.6
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 9.1e-165 584.7 699 48.1
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 3.0e-160 569.7 704 48.3
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 8.2e-158 561.6 744 45.2
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 1.7e-155 553.9 755 44.0
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 2.7e-145 520.0 702 44.6
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 4.4e-143 512.7 627 47.2
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 7.5e-143 511.9 696 45.4
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 1.3e-142 511.1 733 44.3
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 6.3e-142 508.8 647 46.5
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 1.2e-140 504.6 681 43.6
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 1.2e-140 504.6 701 44.5
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 1.2e-140 504.6 697 44.0
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.5e-140 503.1 765 40.9
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 2.5e-138 496.9 675 43.7
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 5.6e-138 495.7 690 41.6
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 1.4e-136 491.1 765 40.4
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 3.0e-136 490.0 686 42.9
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 3.7e-134 483.0 735 42.3
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 1.8e-133 480.7 623 46.7
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 1.0e-131 474.9 686 41.3
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 1.7e-131 474.2 760 40.5
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 3.9e-131 473.0 687 43.4
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 3.6e-129 466.5 659 43.1
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 1.4e-128 464.5 694 42.5
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 4.0e-128 463.0 712 39.9
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.4e-126 455.7 699 41.1
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 3.2e-125 453.4 677 40.2
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 7.0e-125 452.2 739 40.5
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 7.0e-125 452.2 683 42.3
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 1.2e-124 451.4 690 41.7
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 2.7e-124 450.3 702 39.2
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 4.6e-124 449.5 764 38.1
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 1.0e-123 448.4 686 40.2
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 1.3e-123 448.0 801 37.5
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.7e-123 447.6 762 40.0
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 1.7e-123 447.6 709 40.1
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 6.6e-123 445.7 683 41.3
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 7.3e-122 442.2 868 34.8
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.1e-121 440.7 749 39.3
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 3.1e-120 436.8 673 42.1
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 1.2e-119 434.9 681 42.1
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 3.2e-117 426.8 704 38.6
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 7.1e-117 425.6 676 40.2
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 9.5e-114 415.2 824 34.6
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 1.8e-112 411.0 835 35.3
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 5.8e-111 406.0 642 38.6
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 2.9e-110 403.7 655 39.8
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 2.7e-108 397.1 683 38.2
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 4.3e-106 389.8 796 35.6
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 1.1e-101 375.2 736 35.5
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 4.6e-100 369.8 468 48.1
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 3.0e-99 367.1 613 38.2
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 5.1e-99 366.3 598 38.1
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 7.3e-98 362.5 689 36.0
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 1.1e-96 358.6 683 35.1
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 4.0e-96 356.7 805 33.4
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 9.9e-95 352.1 692 36.7
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 2.2e-94 350.9 670 35.4
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 2.2e-94 350.9 728 35.9
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 1.1e-93 348.6 779 34.1
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.1e-93 348.6 729 34.0
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 1.4e-93 348.2 696 36.2
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 5.4e-93 346.3 796 33.7
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 9.3e-93 345.5 688 35.3
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 6.0e-92 342.8 672 35.3
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 7.9e-92 342.4 447 42.7
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 1.3e-91 341.7 708 35.9
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 3.0e-91 340.5 671 35.0
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 6.7e-91 339.3 675 35.6
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 1.1e-90 338.6 671 35.3
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 3.3e-90 337.0 671 33.4
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 4.8e-89 333.2 695 34.5
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 6.2e-89 332.8 687 34.8
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 5.3e-88 329.7 708 34.5
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 6.9e-88 329.3 691 34.9
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 5.8e-87 326.2 805 33.0
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 1.3e-86 325.1 704 33.5
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 1.7e-86 324.7 273 63.0
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.1e-85 322.0 312 53.8
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 4.6e-84 316.6 310 53.9
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 7.9e-84 315.8 319 52.4
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 7.4e-82 309.3 326 50.9
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 8.1e-81 305.8 831 29.1
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 1.0e-78 298.9 329 50.2
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 3.8e-78 297.0 685 33.4
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 5.5e-77 293.1 673 32.5
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 7.1e-77 292.7 823 30.5
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 1.2e-76 292.0 620 35.3
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.0e-76 289.7 300 51.3
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 5.1e-75 286.6 682 32.1
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.9e-74 284.6 566 35.0
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 3.3e-74 283.9 714 30.0
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 1.3e-73 282.0 311 48.9
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 8.2e-73 279.3 304 49.0
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 6.5e-70 269.6 311 47.6
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 8.5e-70 269.2 725 29.8
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 1.9e-69 268.1 718 32.3
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 9.3e-69 265.8 316 44.9
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 2.1e-68 264.6 310 45.5
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 8.7e-67 259.2 309 44.7
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 1.1e-64 252.3 697 30.8
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 1.4e-64 251.9 283 48.1
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 1.5e-63 248.4 308 45.8
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 3.4e-63 247.3 307 45.9
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 1.3e-62 245.4 305 44.6
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.7e-62 245.0 265 50.2
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 2.7e-60 237.7 271 45.0
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.9e-59 233.8 224 53.6
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 6.3e-57 226.5 768 28.4
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 6.3e-57 226.5 691 29.7
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 1.4e-56 225.3 227 55.1
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.2e-55 222.2 310 43.5
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 2.0e-55 221.5 607 31.3
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 3.4e-55 220.7 319 39.2
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 1.7e-54 218.4 434 36.6
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 7.2e-53 213.0 269 46.1
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 2.7e-52 211.1 226 51.3
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 2.0e-50 204.9 676 28.7
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 1.7e-46 191.8 190 53.2
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 2.5e-45 188.0 298 38.9
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 4.0e-43 180.6 306 37.9
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 5.7e-42 176.8 311 37.9
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 4.8e-41 173.7 184 50.5
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 5.3e-40 170.2 193 49.2
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 5.3e-40 170.2 193 49.2
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 3.5e-39 167.5 258 42.6
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 3.8e-30 137.5 229 40.6
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 5.5e-29 133.7 173 41.0
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 7.2e-29 133.3 139 51.8
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 8.0e-28 129.8 173 41.6
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 1.4e-27 129.0 173 40.5
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 5.2e-27 127.1 310 28.7
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 2.8e-25 121.3 194 38.1
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 4.9e-25 120.6 175 38.9
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 6.3e-25 120.2 479 26.1
Ciclev10022885m.g Citrus clementina HOM05D004076 ORTHO05D004606 8.3e-25 119.8 123 52.0
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 2.4e-24 118.2 189 38.1
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 4.5e-23 114.0 153 39.9
Lj8A15T42 Lonicera japonica HOM05D004076 ORTHO05D004606 8.6e-22 109.8 141 44.7
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 4.3e-21 107.5 686 22.9
Hund12007 Selenicereus undatus HOM05D004076 ORTHO05D004606 1.0e-19 102.8 129 43.4
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 1.4e-19 102.4 121 43.0
Cc03_g11430 Coffea canephora HOM05D004076 ORTHO05D004606 9.8e-18 96.3 136 40.4
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 9.8e-18 96.3 103 45.6
Peaxi162Scf00297g01127 Petunia axillaris HOM05D004076 ORTHO05D004606 1.3e-17 95.9 126 40.5
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 2.9e-17 94.7 336 29.8
BcaC07g42096 Brassica carinata HOM05D000961 ORTHO05D000841 1.0e-14 86.3 188 32.4
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 2.3e-14 85.1 77 61.0
MBI08_g23495_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D003073 8.6e-14 83.2 133 37.6
SEGI_15340 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 1.5e-10 72.4 110 38.2
Lj8A15T43 Lonicera japonica HOM05D004076 ORTHO05D004606 3.2e-08 64.7 120 36.7
MBI08_g23496_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 1.3e-06 59.3 52 55.8


User provided reference genes

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