Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011587.2 Cucumis melo HOM05D003443 ORTHO05D008640 2.4e-90 335.5 172 100.0
CsaV3_6G003590 Cucumis sativus L. HOM05D003443 ORTHO05D008640 2.2e-75 285.8 151 96.0
MELO3C011304.2 Cucumis melo HOM05D003443 ORTHO05D008640 4.1e-74 281.6 163 92.0
ClCG08G005410 Citrullus lanatus HOM05D003443 ORTHO05D008640 3.4e-60 235.3 228 60.5
Sed0028054 Sechium edule HOM05D003443 ORTHO05D008640 2.4e-53 212.6 151 74.2
AUR62004720 Chenopodium quinoa HOM05D003443 ORTHO05D008640 4.8e-30 135.2 148 53.4
Dinv40389 Davidia involucrata HOM05D003443 ORTHO05D008640 4.1e-29 132.1 157 50.3
Cfa015987 Carpinus fangiana HOM05D003443 ORTHO05D009887 6.9e-29 131.3 134 53.7
Thecc.08G121300 Theobroma cacao HOM05D003443 ORTHO05D008640 9.0e-29 131.0 162 46.9
Haze_00480 Corylus avellana HOM05D003443 ORTHO05D008640 1.5e-28 130.2 134 53.7
QL08p024382 Quercus lobata HOM05D003443 ORTHO05D008640 2.0e-28 129.8 133 55.6
Cpa.g.sc70.11 Carica papaya HOM05D003443 ORTHO05D008640 2.6e-28 129.4 141 49.6
PSO170G0931 Papaver somniferum HOM05D003443 ORTHO05D008640 2.6e-28 129.4 140 54.3
DCAR_014106 Daucus carota HOM05D003443 ORTHO05D008640 3.4e-28 129.0 150 51.3
GSVIVG01008902001 Vitis vinifera HOM05D003443 ORTHO05D008640 3.4e-28 129.0 141 53.9
Ca_26970_v3 Cicer arietinum L. HOM05D003443 ORTHO05D008640 5.9e-28 128.3 133 56.4
Ciclev10002759m.g Citrus clementina HOM05D003443 ORTHO05D008640 5.9e-28 128.3 146 52.1
Sc01g0001350 Simmondsia chinensis HOM05D003443 ORTHO05D008640 5.9e-28 128.3 147 46.3
Medtr5g058660 Medicago truncatula HOM05D003443 ORTHO05D008640 7.6e-28 127.9 148 51.4
Medtr5g059030 Medicago truncatula HOM05D003443 ORTHO05D008640 7.6e-28 127.9 148 51.4
Nn4g26023 Nelumbo nucifera HOM05D003443 ORTHO05D008640 7.6e-28 127.9 136 52.9
Psat2g087720 Pisum sativum HOM05D003443 ORTHO05D008640 2.2e-27 126.3 133 55.6
Manes.18G075200 Manihot esculenta HOM05D003443 ORTHO05D008640 2.9e-27 125.9 140 49.3
PGSC0003DMG400000906 Solanum tuberosum HOM05D003443 ORTHO05D008640 2.9e-27 125.9 136 54.4
MD15G1353300 Malus domestica HOM05D003443 ORTHO05D008640 5.0e-27 125.2 140 51.4
Nitab4.5_0002883g0010 Nicotiana tabacum HOM05D003443 ORTHO05D008640 5.0e-27 125.2 136 53.7
AL6G41970 Arabidopsis lyrata HOM05D003443 ORTHO05D008640 6.5e-27 124.8 140 47.1
MD03G1200300 Malus domestica HOM05D003443 ORTHO05D008640 6.5e-27 124.8 140 51.4
Atru.chr13.1408 Acer truncatum HOM05D003443 ORTHO05D008640 8.5e-27 124.4 136 52.2
Actinidia23064 Actinidia chinensis HOM05D003443 ORTHO05D008640 8.5e-27 124.4 153 49.0
Nitab4.5_0001926g0050 Nicotiana tabacum HOM05D003443 ORTHO05D008640 8.5e-27 124.4 136 52.9
RcHm_v2.0_Chr6g0295401 Rosa chinensis HOM05D003443 ORTHO05D008640 8.5e-27 124.4 140 49.3
Solyc11g013020.2 Solanum lycopersicum HOM05D003443 ORTHO05D008640 8.5e-27 124.4 136 53.7
THA.LOC104817138 Tarenaya hassleriana HOM05D003443 ORTHO05D008640 8.5e-27 124.4 140 50.7
Sabra02G0067600 Salix brachista HOM05D003443 ORTHO05D008640 1.1e-26 124.0 140 48.6
Glyma.14G162600 Glycine max HOM05D003443 ORTHO05D008640 1.4e-26 123.6 133 48.1
Sopen11g007760 Solanum pennellii HOM05D003443 ORTHO05D008640 1.4e-26 123.6 136 53.7
FvH4_2g26530 Fragaria vesca HOM05D003443 ORTHO05D008640 2.5e-26 122.9 140 47.9
Prupe.1G501600 Prunus persica HOM05D003443 ORTHO05D008640 2.5e-26 122.9 136 53.7
AT4G08240 Arabidopsis thaliana HOM05D003443 ORTHO05D008640 4.2e-26 122.1 140 46.4
CSS0034050 Camellia sinensis var. sinensis HOM05D003443 ORTHO05D008640 4.2e-26 122.1 140 50.0
CiPaw.05G224500 Carya illinoinensis HOM05D003443 ORTHO05D008640 4.2e-26 122.1 140 50.0
Gohir.A05G233400 Gossypium hirsutum HOM05D003443 ORTHO05D008640 4.2e-26 122.1 154 46.8
FAN24G2127 Fragaria x ananassa HOM05D003443 ORTHO05D008640 5.5e-26 121.7 140 47.1
Gorai.009G244100 Gossypium raimondii HOM05D003443 ORTHO05D008640 5.5e-26 121.7 154 46.8
Lalb_Chr10g0101911 Lupinus albus HOM05D003443 ORTHO05D008640 9.3e-26 120.9 135 48.9
Peaxi162Scf00395g00717 Petunia axillaris HOM05D003443 ORTHO05D008640 9.3e-26 120.9 136 48.5
CARHR259340 Cardamine hirsuta HOM05D003443 ORTHO05D008640 1.6e-25 120.2 136 47.8
Gohir.D05G235800 Gossypium hirsutum HOM05D003443 ORTHO05D008640 1.6e-25 120.2 154 46.1
VMungo0647G0179 Vigna mungo HOM05D003443 ORTHO05D008640 1.6e-25 120.2 133 50.4
Peaxi162Scf00198g00098 Petunia axillaris HOM05D003443 ORTHO05D008640 2.7e-25 119.4 136 48.5
Potri.002G086200 Populus trichocarpa HOM05D003443 ORTHO05D008640 4.6e-25 118.6 140 48.6
FAN15G0021 Fragaria x ananassa HOM05D003443 ORTHO05D008640 7.9e-25 117.9 140 46.4
FAN27G2419 Fragaria x ananassa HOM05D003443 ORTHO05D008640 7.9e-25 117.9 140 47.1
BcaB01g02870 Brassica carinata HOM05D003443 ORTHO05D008640 1.0e-24 117.5 140 45.7
Thhalv10029053m.g Eutrema salsugineum HOM05D003443 ORTHO05D008640 1.0e-24 117.5 150 44.7
A03p27990 Brassica napus HOM05D003443 ORTHO05D008640 1.8e-24 116.7 140 45.0
BraA03t12014Z Brassica rapa HOM05D003443 ORTHO05D008640 2.3e-24 116.3 140 45.0
Cc10_g11000 Coffea canephora HOM05D003443 ORTHO05D008640 5.1e-24 115.2 136 50.0
CAN.G513.1 Capsicum annuum HOM05D003443 ORTHO05D008640 6.7e-24 114.8 136 49.3
BcaC01g04776 Brassica carinata HOM05D003443 ORTHO05D008640 8.7e-24 114.4 140 44.3
C03p33840 Brassica napus HOM05D003443 ORTHO05D008640 8.7e-24 114.4 140 44.3
BolC3t15700H Brassica oleracea HOM05D003443 ORTHO05D008640 8.7e-24 114.4 140 44.3
Actinidia02607 Actinidia chinensis HOM05D003443 ORTHO05D008640 1.1e-23 114.0 143 49.7
Aa31LG9G14320 Aethionema arabicum HOM05D003443 ORTHO05D008640 2.5e-23 112.8 130 48.5
Rhsim06G0105400 Rhododendron simsii HOM05D003443 ORTHO05D008640 4.3e-23 112.1 154 46.1
vmacro12548 Vaccinium macrocarpon HOM05D003443 ORTHO05D008640 4.3e-23 112.1 160 45.0
arahy.Tifrunner.gnm1.ann1.ZIXY5S Arachis hypogaea HOM05D003443 ORTHO05D008640 5.7e-23 111.7 138 49.3
Sp6g09810 Schrenkiella parvula HOM05D003443 ORTHO05D008640 5.7e-23 111.7 140 43.6
Carub.0006s2677 Capsella rubella HOM05D003443 ORTHO05D008640 7.4e-23 111.3 140 42.9
HPP92_002301 Vanilla planifolia HOM05D003443 ORTHO05D008640 9.7e-23 110.9 131 49.6
CANSAT25G1680 Cannabis sativa HOM05D003443 ORTHO05D008640 2.2e-22 109.8 138 49.3
Hma1.2p1_0073F.1_g038390 Hydrangea macrophylla HOM05D003443 ORTHO05D008640 2.8e-22 109.4 134 47.8
Lj1g0013808 Lotus japonicus HOM05D003443 ORTHO05D008640 2.8e-22 109.4 140 44.3
Migut.C01148 Erythranthe guttata HOM05D003443 ORTHO05D008640 3.7e-22 109.0 139 46.0
SGA_v2.0_scaffold52G18981 Striga asiatica HOM05D003443 ORTHO05D008640 4.8e-22 108.6 134 45.5
arahy.Tifrunner.gnm1.ann1.B00VWE Arachis hypogaea HOM05D003443 ORTHO05D008640 6.3e-22 108.2 138 47.8
MBI15_g35999_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D008640 1.1e-21 107.5 139 48.2
MBI06_g44272_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D008640 1.4e-21 107.1 139 48.2
SalBow7G2413 Salvia bowleyana HOM05D003443 ORTHO05D008640 1.4e-21 107.1 137 43.8
SalBow7G4791 Salvia bowleyana HOM05D003443 ORTHO05D008640 1.4e-21 107.1 137 43.8
Aqoxy6G00163 Aquilegia oxysepala HOM05D003443 ORTHO05D008640 5.3e-21 105.1 125 45.6
TPR.G8499 Trifolium pratense HOM05D028375 ORTHO05D008640 2.6e-20 102.8 134 47.0
MSTRG.1460 Avicennia marina HOM05D003443 ORTHO05D008640 5.9e-20 101.7 136 43.4
Hund27039 Selenicereus undatus HOM05D003443 ORTHO05D008640 5.0e-19 98.6 222 34.7
ECA232G0443 Erigeron canadensis HOM05D003443 ORTHO05D008640 8.5e-19 97.8 138 42.0
HanXRQChr09g0254131 Helianthus annuus HOM05D003443 ORTHO05D008640 1.9e-18 96.7 136 42.6
AUR62023639 Chenopodium quinoa HOM05D003443 ORTHO05D008640 3.2e-18 95.9 136 41.2
Zm00001eb244530 Zea mays HOM05D003443 ORTHO05D008640 9.4e-18 94.4 137 41.6
CDE08G0113 Ceratophyllum demersum HOM05D003443 ORTHO05D008640 1.6e-17 93.6 118 46.6
MD08G1167900 Malus domestica HOM05D003443 ORTHO05D008640 1.6e-17 93.6 145 41.4
Lsat_1_v5_gn_4_136221 Lactuca sativa HOM05D003443 ORTHO05D008640 2.7e-17 92.8 136 43.4
CDE06G0537 Ceratophyllum demersum HOM05D003443 ORTHO05D008640 3.6e-17 92.4 118 46.6
PGR044G0044 Punica granatum HOM05D003443 ORTHO05D008640 3.6e-17 92.4 133 44.4
ATR0121G005 Amborella trichopoda HOM05D003443 ORTHO05D008640 1.8e-16 90.1 130 40.8
Os02g0567000 Oryza sativa ssp. japonica HOM05D003443 ORTHO05D008640 5.1e-16 88.6 148 41.2
Oeu047933.1 Olea europaea HOM05D003443 ORTHO05D008640 6.7e-16 88.2 156 39.7
unitig_747.g21488 Utricularia gibba HOM05D003443 ORTHO05D008640 5.7e-15 85.1 141 37.6
Ah.16g110170 Amaranthus hybridus HOM05D003443 ORTHO05D008640 2.2e-14 83.2 87 47.1
TAR628G1666 Trochodendron aralioides HOM05D003443 ORTHO05D008640 4.8e-14 82.0 79 50.6
Eucgr.L01689 Eucalyptus grandis HOM05D003443 ORTHO05D008640 8.2e-14 81.3 69 55.1
SEGI_04119 Sequoiadendron giganteum HOM05D003443 ORTHO05D008640 8.2e-14 81.3 124 38.7
Phvul.008G165400 Phaseolus vulgaris HOM05D003443 ORTHO05D008640 4.1e-13 79.0 88 52.3
Duzib093G0610 Durio zibethinus HOM05D003443 ORTHO05D008640 5.9e-12 75.1 153 37.3
TWI12G0841 Tripterygium wilfordii HOM05D003443 ORTHO05D008640 2.9e-11 72.8 72 50.0
Migut.G00969 Erythranthe guttata HOM05D003443 ORTHO05D008640 1.8e-08 63.5 136 36.8
Cfa009666 Carpinus fangiana HOM05D003443 ORTHO05D008640 8.8e-08 61.2 74 47.3


User provided reference genes

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