Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 0.0e+00 1229.5 624 100.0
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 0.0e+00 1219.5 621 99.5
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 0.0e+00 1199.1 624 97.6
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 0.0e+00 1138.3 625 92.6
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 1.4e-281 972.6 604 81.1
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 9.2e-281 969.9 599 81.5
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 1.6e-280 969.1 598 81.9
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 3.8e-279 964.5 604 81.3
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 2.3e-276 955.3 619 79.3
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 2.0e-275 952.2 598 80.4
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 2.9e-274 948.3 622 78.9
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 4.9e-274 947.6 624 77.6
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 6.4e-274 947.2 620 77.9
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 8.3e-274 946.8 600 80.5
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 2.7e-272 941.8 599 80.3
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 3.9e-271 937.9 588 80.8
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 1.1e-270 936.4 621 78.1
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 1.5e-270 936.0 589 80.3
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 2.5e-270 935.3 592 78.7
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 7.3e-270 933.7 620 76.8
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 2.1e-269 932.2 599 79.6
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 6.2e-269 930.6 605 78.5
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 3.1e-268 928.3 604 78.1
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 4.0e-268 927.9 593 79.1
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 4.0e-268 927.9 597 78.9
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 6.8e-268 927.2 604 78.5
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 3.4e-267 924.9 589 79.5
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.4e-267 924.9 605 78.0
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 5.8e-267 924.1 619 76.4
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 1.7e-266 922.5 605 77.9
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 2.9e-266 921.8 607 76.9
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.7e-266 921.4 593 78.9
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 3.7e-266 921.4 637 76.0
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 6.4e-266 920.6 620 76.5
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.1e-265 919.8 607 78.4
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 3.2e-265 918.3 589 78.6
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 5.4e-265 917.5 600 78.2
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 1.2e-264 916.4 622 75.6
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 2.1e-264 915.6 589 79.1
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 7.8e-264 913.7 589 78.9
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 2.3e-263 912.1 588 79.3
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 8.6e-263 910.2 609 77.5
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 8.6e-263 910.2 609 77.5
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 2.5e-262 908.7 609 77.3
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 3.3e-262 908.3 610 77.2
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 5.6e-262 907.5 589 78.4
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 2.8e-261 905.2 584 78.8
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 3.6e-261 904.8 610 75.9
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 3.6e-261 904.8 625 76.0
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.8e-260 902.5 597 77.6
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 3.1e-260 901.7 584 78.4
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 4.0e-260 901.4 594 77.9
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 8.9e-260 900.2 610 76.2
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 8.9e-260 900.2 610 75.2
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 1.7e-258 896.0 572 78.7
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 2.2e-258 895.6 610 75.9
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 4.9e-258 894.4 607 76.9
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 1.9e-257 892.5 604 75.2
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 7.1e-257 890.6 578 78.4
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.6e-256 889.4 624 74.7
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.1e-256 889.0 578 78.4
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 3.5e-256 888.3 599 76.5
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 4.6e-256 887.9 596 76.5
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.0e-255 885.2 574 79.1
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 1.5e-254 882.9 601 75.5
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.3e-254 881.7 603 76.3
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 1.6e-253 879.4 582 78.0
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 1.6e-253 879.4 644 72.8
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 1.6e-253 879.4 601 76.4
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 2.1e-253 879.0 596 74.7
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 3.6e-253 878.2 614 74.3
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 1.4e-252 876.3 611 73.6
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 1.8e-252 875.9 605 74.4
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 3.4e-251 871.7 597 74.4
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 6.0e-248 860.9 571 76.9
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 6.2e-245 850.9 552 79.2
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 5.3e-244 847.8 520 81.5
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 3.2e-241 838.6 606 71.1
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 7.1e-241 837.4 593 73.2
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 1.2e-240 836.6 598 71.2
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 3.5e-240 835.1 618 70.4
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 6.0e-240 834.3 589 73.3
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 7.8e-240 833.9 625 70.7
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 1.0e-239 833.6 674 66.2
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 1.3e-239 833.2 530 78.9
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 3.9e-239 831.6 613 70.5
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 8.7e-239 830.5 615 70.7
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 2.5e-238 828.9 572 74.8
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 2.1e-237 825.9 632 69.3
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 6.2e-237 824.3 623 70.3
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 5.3e-236 821.2 608 70.7
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.2e-235 820.1 617 70.3
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.5e-235 819.7 610 70.2
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 4.5e-235 818.1 597 71.0
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.3e-234 816.6 574 73.7
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 1.3e-234 816.6 620 69.7
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 6.4e-234 814.3 594 71.4
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 6.4e-234 814.3 594 71.4
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 2.4e-233 812.4 615 69.3
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 7.1e-233 810.8 574 72.8
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 4.6e-232 808.1 623 69.7
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 1.1e-230 803.5 596 70.0
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 1.1e-230 803.5 577 72.1
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 4.3e-230 801.6 577 71.9
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 9.6e-230 800.4 616 68.5
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 9.6e-230 800.4 569 73.1
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 2.8e-229 798.9 577 71.9
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 1.1e-228 797.0 604 68.5
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 1.1e-228 797.0 604 68.5
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 4.5e-227 791.6 611 68.4
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 5.8e-227 791.2 585 70.9
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 9.9e-227 790.4 612 67.5
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 2.9e-226 788.9 558 72.4
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 2.9e-226 788.9 558 72.4
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 8.4e-226 787.3 580 71.2
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 8.4e-226 787.3 580 71.2
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 7.9e-224 780.8 593 70.7
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.7e-218 763.1 594 68.9
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 6.5e-218 761.1 572 70.1
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 1.1e-214 750.4 560 71.4
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.7e-214 748.0 586 66.0
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 2.2e-213 746.1 523 72.7
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 4.1e-212 741.9 584 67.6
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 6.9e-212 741.1 529 72.4
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 9.0e-212 740.7 602 63.1
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.4e-209 733.4 574 67.1
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 2.1e-208 729.6 525 70.3
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 1.5e-206 723.4 594 65.2
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 1.3e-205 720.3 589 63.5
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 3.7e-205 718.8 593 67.3
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.4e-204 716.8 519 70.5
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 1.7e-202 709.9 420 84.0
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 1.8e-199 699.9 523 68.8
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.4e-198 695.3 527 68.1
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.7e-197 692.2 407 83.8
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.8e-197 691.8 527 67.9
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.2e-195 687.2 412 82.0
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.0e-195 686.4 527 67.4
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 1.2e-192 677.2 412 82.8
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 8.0e-192 674.5 623 59.9
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.1e-188 664.1 495 68.5
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.4e-188 662.9 527 66.0
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 5.3e-188 661.8 513 67.3
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.0e-183 647.5 540 62.2
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 3.7e-173 612.5 463 70.8
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 5.9e-163 578.6 582 52.6
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 6.4e-157 558.5 476 59.9
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 2.0e-155 553.5 379 73.6
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 1.5e-150 537.3 524 57.4
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 2.9e-141 506.5 335 77.3
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 4.7e-136 489.2 340 75.0
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.9e-132 477.2 465 57.2
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 3.3e-105 386.7 239 79.5
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.3e-69 268.5 157 85.4
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 1.2e-65 255.4 145 87.6
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 1.3e-48 198.7 163 62.6
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 3.7e-48 197.2 163 60.1
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 9.2e-47 192.6 160 60.0
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 5.9e-46 189.9 160 59.4
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 8.6e-37 159.5 131 62.6
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 3.6e-35 154.1 97 79.4
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 3.1e-26 124.4 94 66.0
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.1e-23 115.9 94 61.7
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.2e-22 112.5 312 28.5
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.5e-22 110.9 493 24.1
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 1.5e-20 105.5 115 52.2
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 2.4e-18 98.2 60 81.7
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 4.9e-16 90.5 127 37.0
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 9.3e-15 86.3 100 52.0
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.6e-14 85.5 190 27.9
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 2.1e-14 85.1 70 72.9
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 6.0e-14 83.6 226 29.2
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 5.1e-13 80.5 86 50.0
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.3e-10 70.5 65 61.5
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 2.6e-09 68.2 60 53.3
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 9.3e-07 59.7 61 52.5


User provided reference genes

Program Settings