Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 0.0e+00 1699.9 947 100.0
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 0.0e+00 1552.0 948 91.7
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 0.0e+00 1405.2 964 84.9
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 0.0e+00 1211.4 931 74.5
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 7.1e-293 1010.7 932 63.2
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 4.6e-276 954.9 936 60.1
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 3.4e-271 938.7 931 60.5
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 7.2e-269 931.0 935 58.3
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 9.3e-269 930.6 932 60.3
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 3.6e-268 928.7 958 58.4
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 1.3e-267 926.8 944 60.0
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 1.8e-267 926.4 932 59.3
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 1.5e-263 913.3 936 58.7
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 2.2e-262 909.4 937 59.2
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 8.5e-262 907.5 945 58.8
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 9.7e-258 894.0 937 57.8
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 6.3e-257 891.3 997 56.6
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 3.1e-256 889.0 844 62.8
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 5.9e-255 884.8 931 57.5
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 7.7e-255 884.4 942 57.5
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 2.9e-254 882.5 952 58.2
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 3.8e-254 882.1 935 58.0
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 1.4e-253 880.2 938 56.8
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 7.2e-253 877.9 924 58.4
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 3.0e-251 872.5 935 57.3
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 8.8e-251 870.9 932 56.7
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 2.4e-248 862.8 949 55.4
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 1.6e-244 850.1 957 54.4
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 1.6e-244 850.1 946 55.3
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 3.6e-244 849.0 948 55.2
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.8e-243 846.7 947 56.2
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 7.5e-242 841.3 909 57.5
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 8.2e-241 837.8 944 55.4
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 2.4e-240 836.3 942 55.2
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 9.1e-240 834.3 938 55.1
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.2e-239 833.9 940 54.6
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 1.6e-239 833.6 1085 51.0
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 2.0e-239 833.2 937 54.6
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 2.2e-238 829.7 938 55.0
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 2.5e-237 826.2 938 55.1
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 1.6e-236 823.5 971 54.1
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 1.0e-235 820.8 949 54.9
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 6.8e-235 818.1 949 53.7
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 8.8e-235 817.8 981 53.2
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 2.0e-234 816.6 942 54.8
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 8.3e-233 811.2 943 53.8
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 1.1e-232 810.8 910 55.8
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 1.4e-232 810.4 946 54.5
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 3.1e-232 809.3 947 54.4
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 4.1e-232 808.9 910 53.8
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 2.9e-230 802.7 937 53.9
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 6.5e-230 801.6 923 53.3
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 4.2e-229 798.9 935 54.0
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 3.6e-228 795.8 948 52.4
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 7.5e-226 788.1 971 52.7
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 2.2e-225 786.6 954 53.1
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 1.1e-224 784.3 941 52.1
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 4.5e-223 778.9 939 53.6
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 4.5e-223 778.9 936 52.5
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 7.8e-223 778.1 927 52.6
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 7.8e-223 778.1 941 53.2
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 2.9e-222 776.2 937 51.2
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 1.5e-221 773.9 928 51.4
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 7.3e-221 771.5 932 51.3
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 2.1e-220 770.0 930 53.0
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 2.8e-220 769.6 914 53.2
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 3.6e-220 769.2 886 54.6
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 3.6e-220 769.2 934 51.1
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 3.0e-219 766.1 934 51.7
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 8.9e-219 764.6 939 51.8
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 1.2e-218 764.2 975 50.5
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 2.0e-218 763.5 971 51.6
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 3.7e-217 759.2 1001 50.7
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 1.8e-216 756.9 932 49.9
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 2.0e-215 753.4 930 50.5
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 3.5e-215 752.7 854 53.3
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 6.0e-215 751.9 933 50.5
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 6.0e-215 751.9 937 51.4
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 6.0e-215 751.9 948 51.8
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 5.0e-214 748.8 931 51.2
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 1.1e-213 747.7 1029 49.9
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 2.8e-212 743.0 934 50.9
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 9.8e-210 734.6 937 50.4
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 1.3e-209 734.2 931 49.9
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 1.3e-209 734.2 931 49.9
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 2.2e-209 733.4 935 50.2
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 2.7e-207 726.5 929 50.4
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 1.9e-205 720.3 936 49.9
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 1.8e-203 713.8 956 50.1
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 3.0e-198 696.4 932 49.1
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 3.3e-197 693.0 886 51.1
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 1.9e-192 677.2 942 48.2
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 1.9e-181 640.6 811 51.0
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 3.8e-169 599.7 929 43.8
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 1.6e-164 584.3 959 42.8
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 4.8e-164 582.8 959 42.0
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 8.7e-158 562.0 934 42.8
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 1.8e-142 511.1 443 59.8
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 6.7e-142 509.2 699 49.5
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 9.7e-133 478.8 394 64.5
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 1.4e-126 458.4 588 51.5
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.3e-126 457.6 616 49.5
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 7.2e-120 436.0 833 41.5
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 5.4e-115 419.9 623 45.3
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 2.9e-113 414.1 516 53.7
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.2e-85 322.4 495 47.3
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 3.5e-82 310.8 622 38.3
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.9e-75 288.5 264 60.6
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 8.1e-71 273.1 311 56.9
TAR623G0736 Trochodendron aralioides HOM05D004844 ORTHO05D006036 6.9e-70 270.0 322 53.1
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 3.8e-68 264.2 299 55.2
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.9e-64 251.9 265 50.9
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 3.1e-62 244.6 260 50.8
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 6.9e-62 243.4 968 28.2
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.2e-58 232.6 409 45.5
Glyma.18G236167 Glycine max HOM05D004844 ORTHO05D006036 1.5e-56 225.7 211 62.6
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.6e-50 205.7 330 45.5
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 1.9e-48 198.7 368 40.5
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 4.3e-48 197.6 1142 24.3
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 2.3e-41 175.3 192 51.6
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 8.5e-28 130.2 321 40.5
Actinidia04686 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.9e-27 129.0 131 58.8
SEGI_26642 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 3.2e-27 128.3 134 53.0
Actinidia04727 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.6e-26 125.9 133 56.4
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 1.6e-26 125.9 736 26.4
Actinidia04685 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.1e-26 125.6 102 67.6
SEGI_11983 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 4.7e-26 124.4 127 53.5
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 6.1e-26 124.0 694 24.2
unitig_62.g23698 Utricularia gibba HOM05D004844 ORTHO05D006036 3.7e-23 114.8 217 40.6
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 1.8e-22 112.5 352 34.7
SEGI_15727 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.3e-20 106.3 116 55.2
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 1.7e-20 105.9 104 53.8
BolC2t08646H Brassica oleracea HOM05D004844 ORTHO05D006036 8.0e-18 97.1 88 55.7
C02p25770 Brassica napus HOM05D004844 ORTHO05D006036 4.0e-17 94.7 88 55.7
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 1.5e-16 92.8 120 46.7
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 9.7e-16 90.1 157 39.5
Actinidia27764 Actinidia chinensis HOM05D004844 ORTHO05D006036 4.8e-15 87.8 52 82.7
Rhsim10G0117900 Rhododendron simsii HOM05D004844 ORTHO05D006036 5.3e-14 84.3 88 55.7
MD13G1058800 Malus domestica HOM05D004844 ORTHO05D006036 2.0e-13 82.4 72 68.1
Actinidia04726 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.6e-13 82.0 52 80.8
Rhsim04G0142900 Rhododendron simsii HOM05D004844 ORTHO05D006036 3.2e-11 75.1 55 70.9
Rhsim04G0143200 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.6e-10 72.8 70 62.9
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 1.4e-09 69.7 58 63.8
Dinv34035 Davidia involucrata HOM05D004844 ORTHO05D006036 5.2e-09 67.8 134 35.1
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 2.0e-08 65.9 205 27.8
TAR629G1217 Trochodendron aralioides HOM05D004844 ORTHO05D006036 3.4e-08 65.1 94 43.6
ATR0735G001 Amborella trichopoda HOM05D004844 ORTHO05D006036 7.5e-08 63.9 52 63.5
SEGI_23631 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 6.3e-07 60.8 48 70.8


User provided reference genes

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