Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 3.8e-216 754.6 394 100.0
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 4.0e-205 718.0 394 95.7
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 4.4e-180 634.8 431 81.0
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 6.1e-121 438.3 350 68.3
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 6.6e-59 232.3 519 38.0
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 8.9e-56 221.9 650 32.0
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 3.2e-53 213.4 178 68.5
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 3.2e-53 213.4 405 41.5
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 7.1e-53 212.2 447 38.9
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 7.1e-53 212.2 427 41.9
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 4.6e-52 209.5 167 72.5
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 3.9e-51 206.5 167 68.9
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 1.1e-50 204.9 171 64.9
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.1e-50 204.9 563 33.9
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 4.3e-50 203.0 241 53.1
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 7.3e-50 202.2 168 69.6
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 7.3e-50 202.2 344 44.2
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 7.3e-50 202.2 344 44.2
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.6e-49 201.1 178 64.6
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 8.9e-48 195.3 234 54.3
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 2.6e-47 193.7 323 45.5
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 7.6e-47 192.2 534 31.6
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.3e-46 191.4 178 60.7
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 3.8e-46 189.9 586 32.8
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 3.8e-46 189.9 430 37.4
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 8.4e-46 188.7 164 67.1
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 2.4e-45 187.2 167 67.7
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 3.2e-45 186.8 542 32.1
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 7.1e-45 185.7 705 28.4
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 1.6e-44 184.5 490 33.9
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 2.7e-44 183.7 512 34.0
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 6.0e-44 182.6 178 61.2
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 1.0e-43 181.8 167 64.1
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 6.6e-43 179.1 466 35.0
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 4.3e-42 176.4 277 46.2
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 2.1e-41 174.1 509 32.6
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 2.8e-41 173.7 182 59.3
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 3.6e-41 173.3 164 60.4
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 6.2e-41 172.6 161 59.6
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 8.1e-41 172.2 177 56.5
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 8.1e-41 172.2 359 39.6
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 8.1e-41 172.2 605 30.9
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 1.1e-40 171.8 648 29.0
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 5.3e-40 169.5 165 61.2
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 2.6e-39 167.2 684 28.1
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 4.4e-39 166.4 181 56.9
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 7.6e-39 165.6 161 56.5
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 9.9e-39 165.2 700 27.7
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 8.4e-38 162.2 443 32.7
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 1.4e-37 161.4 166 57.2
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 5.4e-37 159.5 643 28.8
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 5.4e-37 159.5 461 33.0
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 7.1e-37 159.1 235 48.5
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 3.5e-36 156.8 201 50.7
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 4.6e-36 156.4 611 29.5
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 6.0e-36 156.0 166 57.8
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 1.0e-35 155.2 457 33.9
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 1.3e-35 154.8 232 45.3
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 1.3e-35 154.8 167 55.7
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 1.3e-35 154.8 280 42.1
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 2.3e-35 154.1 266 41.7
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 3.0e-35 153.7 527 31.7
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 5.1e-35 152.9 133 67.7
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 8.7e-35 152.1 193 49.2
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 1.1e-34 151.8 511 31.9
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 3.3e-34 150.2 164 56.7
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 7.3e-34 149.1 166 54.8
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 7.3e-34 149.1 255 44.3
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 7.3e-34 149.1 152 59.9
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 1.3e-33 148.3 163 55.8
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 1.6e-33 147.9 557 28.7
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 2.1e-33 147.5 181 50.8
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 3.6e-33 146.7 551 31.9
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 8.1e-33 145.6 168 54.8
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 1.8e-32 144.4 129 63.6
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 5.3e-32 142.9 168 48.8
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.2e-31 141.7 522 31.2
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 3.4e-31 140.2 521 31.1
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 3.4e-31 140.2 522 31.8
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 4.5e-31 139.8 191 49.2
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 1.7e-30 137.9 165 55.2
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 2.9e-30 137.1 113 67.3
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 6.4e-30 136.0 373 35.7
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 6.4e-30 136.0 167 50.9
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 1.4e-29 134.8 166 52.4
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.9e-29 134.4 171 53.8
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 1.9e-29 134.4 640 26.9
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 4.2e-29 133.3 637 27.2
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 5.4e-29 132.9 167 51.5
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 1.6e-28 131.3 138 56.5
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 4.6e-28 129.8 596 27.0
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 4.6e-28 129.8 596 27.0
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 6.0e-28 129.4 464 30.6
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 1.0e-27 128.6 166 51.2
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 3.9e-27 126.7 164 50.6
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 3.9e-27 126.7 164 51.8
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 8.7e-27 125.6 600 26.7
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.1e-26 125.2 197 46.2
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 1.5e-26 124.8 160 51.2
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 1.5e-26 124.8 197 46.7
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 4.3e-26 123.2 373 31.4
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 5.6e-26 122.9 197 46.2
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 5.6e-26 122.9 171 49.7
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 5.6e-26 122.9 359 31.8
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 9.6e-26 122.1 177 50.3
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 9.6e-26 122.1 166 50.0
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 1.3e-25 121.7 228 40.4
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 2.1e-25 120.9 164 47.0
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 4.8e-25 119.8 448 33.3
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 1.1e-24 118.6 282 38.7
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 6.9e-24 115.9 181 45.3
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 6.9e-24 115.9 390 31.8
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 5.8e-23 112.8 226 39.4
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 3.8e-22 110.2 506 28.3
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 3.8e-22 110.2 104 60.6
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 8.4e-22 109.0 163 49.1
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 4.2e-21 106.7 144 48.6
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 5.5e-21 106.3 564 26.1
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 5.5e-21 106.3 166 42.8
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 2.1e-20 104.4 274 36.1
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 2.7e-20 104.0 142 50.7
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 6.0e-20 102.8 166 42.8
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 6.0e-20 102.8 166 42.8
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 7.9e-20 102.4 72 75.0
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 7.9e-20 102.4 89 65.2
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 1.8e-19 101.3 565 25.8
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 2.3e-19 100.9 89 62.9
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 6.7e-19 99.4 452 28.8
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 8.7e-19 99.0 89 61.8
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 1.1e-18 98.6 284 33.1
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 1.5e-18 98.2 97 54.6
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 1.9e-18 97.8 232 35.8
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 2.5e-18 97.4 538 25.7
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 3.3e-18 97.1 135 48.9
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 7.4e-18 95.9 90 57.8
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 1.1e-16 92.0 238 34.5
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 1.1e-16 92.0 238 34.5
Manes.14G088800 Manihot esculenta HOM05D005042 ORTHO05D006080 1.8e-16 91.3 354 29.9
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 2.6e-15 87.4 603 24.5
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 4.5e-15 86.7 220 32.3
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 1.1e-13 82.0 375 28.5
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 1.8e-11 74.7 158 36.1
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.6e-09 68.2 222 29.3
arahy.Tifrunner.gnm1.ann1.6TZ00L Arachis hypogaea HOM05D005042 ORTHO05D006080 3.8e-06 57.0 419 25.5


User provided reference genes

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