Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 2.1e-132 475.7 240 100.0
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 2.4e-128 462.2 240 97.5
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 3.3e-122 441.8 240 92.9
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 1.7e-121 439.5 240 92.9
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 6.3e-113 411.0 240 85.4
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 1.1e-112 410.2 240 85.0
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 9.1e-112 407.1 239 84.5
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 1.2e-111 406.8 240 85.0
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 2.7e-111 405.6 240 83.3
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 4.5e-111 404.8 240 83.8
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 4.5e-111 404.8 240 83.3
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 7.7e-111 404.1 240 83.8
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 1.7e-110 402.9 240 86.2
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 6.5e-110 401.0 240 84.6
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 1.5e-109 399.8 240 82.9
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 1.9e-109 399.4 240 82.9
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 1.9e-109 399.4 240 81.7
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 2.5e-109 399.1 240 82.5
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 3.2e-109 398.7 240 81.2
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 4.2e-109 398.3 240 84.2
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 7.2e-109 397.5 240 82.9
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 1.2e-108 396.7 240 83.3
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 1.6e-108 396.4 240 82.9
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.1e-108 396.0 238 83.2
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 2.7e-108 395.6 240 82.5
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 4.7e-108 394.8 236 83.1
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 6.1e-108 394.4 238 82.8
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 8.0e-108 394.0 236 82.6
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 1.0e-107 393.7 236 81.8
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 1.0e-107 393.7 238 82.8
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 1.8e-107 392.9 240 82.5
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 1.8e-107 392.9 240 82.5
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 2.3e-107 392.5 247 80.6
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 3.0e-107 392.1 240 80.8
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 4.0e-107 391.7 238 81.9
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 5.2e-107 391.3 240 83.3
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 8.8e-107 390.6 240 82.5
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 1.2e-106 390.2 263 76.4
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 1.2e-106 390.2 240 82.5
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 5.7e-106 387.9 240 81.2
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 5.7e-106 387.9 238 80.7
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 7.5e-106 387.5 238 81.1
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 1.7e-105 386.3 240 79.6
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 2.8e-105 385.6 238 81.1
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 3.7e-105 385.2 257 77.8
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 3.7e-105 385.2 240 80.8
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 7.0e-104 380.9 240 81.2
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 9.1e-104 380.6 238 79.0
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 2.7e-103 379.0 238 81.5
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 5.9e-103 377.9 248 78.2
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 2.9e-102 375.6 238 78.6
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 2.9e-102 375.6 237 78.9
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 3.8e-102 375.2 238 79.8
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 8.5e-102 374.0 265 72.8
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 8.5e-102 374.0 240 77.9
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 1.5e-101 373.2 240 77.9
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 1.5e-101 373.2 260 73.8
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 3.2e-101 372.1 223 82.5
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 3.2e-101 372.1 259 73.4
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 3.2e-101 372.1 252 75.4
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 7.2e-101 370.9 238 76.1
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 9.5e-101 370.5 238 77.7
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 9.5e-101 370.5 237 78.9
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 1.2e-100 370.2 238 77.3
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 4.7e-100 368.2 238 75.6
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 6.1e-100 367.9 223 81.6
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 8.0e-100 367.5 238 76.1
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 1.0e-99 367.1 238 77.3
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 3.0e-99 365.5 233 78.1
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 8.8e-99 364.0 240 76.2
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 2.0e-98 362.8 238 76.9
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 2.6e-98 362.5 238 76.1
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 3.4e-98 362.1 238 75.2
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 3.4e-98 362.1 240 75.4
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 5.7e-98 361.3 233 77.3
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 5.7e-98 361.3 233 77.3
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 9.8e-98 360.5 234 77.4
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 1.3e-97 360.1 240 75.4
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 2.4e-96 355.9 223 81.2
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 4.5e-95 351.7 254 71.3
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 5.9e-95 351.3 239 74.9
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 2.9e-94 349.0 240 73.8
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 1.9e-93 346.3 238 74.4
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 1.9e-93 346.3 238 74.8
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 8.0e-92 340.9 238 72.7
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 8.0e-92 340.9 238 73.1
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 1.4e-91 340.1 271 67.9
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 2.3e-91 339.3 239 73.6
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 5.7e-90 334.7 206 82.0
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 5.4e-88 328.2 223 75.8
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 2.0e-87 326.2 223 73.1
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 7.8e-87 324.3 198 83.3
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 4.3e-85 318.5 274 63.5
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 9.5e-85 317.4 239 69.5
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 1.8e-83 313.2 196 79.1
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 2.4e-80 302.8 237 68.4
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 2.7e-79 299.3 172 84.9
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 1.1e-77 293.9 196 75.0
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 1.9e-77 293.1 197 73.1
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 2.1e-76 289.7 240 65.4
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 2.1e-76 289.7 233 66.1
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 2.6e-74 282.7 191 75.9
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 4.4e-74 282.0 240 63.3
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 7.1e-72 274.6 230 64.8
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 7.1e-72 274.6 176 79.0
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 8.9e-67 257.7 238 55.9
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 8.1e-60 234.6 225 57.8
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 1.1e-59 234.2 214 54.2
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 2.6e-58 229.6 220 51.8
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 8.4e-57 224.6 199 61.3
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 3.2e-56 222.6 215 51.2
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 1.4e-51 207.2 225 53.3
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 2.7e-47 193.0 167 57.5
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 7.9e-39 164.9 216 47.2
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 5.3e-35 152.1 90 84.4
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.5e-34 150.6 91 80.2
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 1.3e-30 137.5 90 80.0
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 6.3e-28 128.6 90 78.9
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 6.5e-25 118.6 90 73.3
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 6.1e-23 112.1 73 82.2
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 7.9e-23 111.7 89 57.3
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.8e-22 110.5 169 41.4
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 2.5e-21 106.7 90 66.7
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 3.3e-21 106.3 77 68.8
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 5.3e-19 99.0 79 67.1
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 6.9e-19 98.6 90 57.8
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 1.0e-17 94.7 166 39.8
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 2.2e-17 93.6 59 76.3
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 5.0e-17 92.4 57 75.4
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 7.2e-16 88.6 51 80.4
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 2.7e-15 86.7 251 29.5
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 7.9e-15 85.1 55 72.7
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 7.9e-15 85.1 55 72.7
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 3.9e-14 82.8 139 41.0
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 3.9e-14 82.8 110 44.5
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 5.1e-14 82.4 143 36.4
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 1.1e-13 81.3 102 49.0
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 2.6e-13 80.1 50 74.0
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 3.3e-13 79.7 89 51.7
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 4.1e-11 72.8 59 55.9
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 9.1e-11 71.6 55 67.3
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 2.0e-10 70.5 93 47.3
SEGI_17465 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 8.5e-09 65.1 40 77.5
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 1.4e-08 64.3 55 65.5
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 5.5e-08 62.4 208 24.5
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 4.7e-07 59.3 227 23.8
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 6.1e-07 58.9 208 22.6
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 8.0e-07 58.5 216 25.5
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 1.0e-06 58.2 226 23.0
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 1.4e-06 57.8 219 22.8
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 6.7e-06 55.5 208 21.6
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 6.7e-06 55.5 217 24.9
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 6.7e-06 55.5 207 24.6


User provided reference genes

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