Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 7.5e-189 663.7 333 100.0
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 3.7e-180 634.8 333 95.5
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 1.9e-171 605.9 338 90.5
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 4.9e-156 554.7 333 82.9
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 5.6e-136 488.0 324 74.1
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 1.9e-131 473.0 320 72.8
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 7.1e-131 471.1 322 72.7
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 1.2e-130 470.3 310 74.2
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 4.6e-130 468.4 320 71.6
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 3.9e-129 465.3 321 71.0
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 2.4e-126 456.1 309 72.8
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 4.0e-126 455.3 320 70.0
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.2e-125 453.8 318 70.1
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 5.8e-125 451.4 328 68.0
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 1.0e-124 450.7 323 69.3
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 1.3e-124 450.3 470 57.7
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 1.3e-124 450.3 308 71.8
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 2.9e-124 449.1 323 69.3
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.9e-123 446.4 347 66.6
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 1.9e-123 446.4 307 69.7
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 3.2e-123 445.7 320 69.7
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 7.1e-123 444.5 308 70.1
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 3.5e-122 442.2 308 69.8
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 6.0e-122 441.4 320 68.8
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.3e-121 440.3 320 65.9
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 3.0e-121 439.1 316 70.3
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 3.3e-120 435.6 316 67.1
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 7.4e-120 434.5 308 68.8
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 9.7e-120 434.1 350 64.3
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.8e-119 432.6 341 65.1
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 3.7e-119 432.2 310 68.7
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 4.1e-118 428.7 317 68.5
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 9.0e-118 427.6 315 66.7
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 1.2e-117 427.2 278 74.5
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 1.2e-117 427.2 308 68.5
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 1.5e-117 426.8 334 64.7
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 2.6e-117 426.0 308 68.2
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.7e-116 423.3 314 65.6
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 2.9e-116 422.5 318 66.0
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 6.5e-116 421.4 318 66.0
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 8.5e-116 421.0 321 65.7
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 1.1e-115 420.6 318 63.5
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.9e-115 419.9 304 67.4
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 3.2e-115 419.1 316 64.9
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 5.5e-115 418.3 321 65.1
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.5e-115 418.3 321 67.9
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 5.5e-115 418.3 318 65.7
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.2e-114 417.2 312 66.0
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 2.7e-114 416.0 324 63.9
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 3.6e-114 415.6 321 65.1
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 6.1e-114 414.8 318 65.4
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 1.4e-113 413.7 311 66.9
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 5.1e-113 411.8 317 64.7
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 5.1e-113 411.8 323 65.0
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 2.0e-112 409.8 319 64.6
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 2.0e-112 409.8 313 63.6
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 2.0e-112 409.8 318 63.5
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 2.0e-112 409.8 317 64.4
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 2.0e-112 409.8 311 66.6
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 3.3e-112 409.1 321 64.2
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 3.3e-112 409.1 313 63.6
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 4.3e-112 408.7 312 62.5
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 4.3e-112 408.7 318 63.2
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 5.7e-112 408.3 326 62.9
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 5.7e-112 408.3 311 62.4
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 7.4e-112 407.9 318 64.8
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 6.3e-111 404.8 344 60.5
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 1.8e-110 403.3 316 61.4
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 2.4e-110 402.9 321 62.6
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 3.1e-110 402.5 317 61.2
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 4.1e-110 402.1 318 61.0
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 4.1e-110 402.1 317 60.9
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 2.0e-109 399.8 348 61.5
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 3.4e-109 399.1 309 62.1
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 5.9e-109 398.3 314 65.9
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 5.9e-109 398.3 307 63.2
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 5.9e-109 398.3 304 64.8
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 5.9e-109 398.3 328 61.6
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 1.3e-108 397.1 307 63.5
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 1.3e-108 397.1 309 62.5
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 1.7e-108 396.7 304 65.5
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 1.7e-108 396.7 304 64.1
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 5.0e-108 395.2 389 55.5
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 4.2e-107 392.1 274 71.2
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 5.5e-107 391.7 307 63.8
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 2.1e-106 389.8 312 63.1
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 3.6e-106 389.0 307 63.5
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 3.6e-106 389.0 306 62.4
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 3.6e-106 389.0 314 61.5
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 7.9e-106 387.9 304 62.5
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 1.8e-105 386.7 363 54.0
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 2.3e-105 386.3 318 61.3
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 2.3e-105 386.3 311 60.1
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 8.8e-105 384.4 304 62.5
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 2.0e-104 383.3 307 61.6
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 4.4e-104 382.1 304 62.2
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 5.7e-104 381.7 351 57.0
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 7.4e-104 381.3 291 64.6
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 2.2e-103 379.8 332 58.4
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 3.7e-103 379.0 298 64.1
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 4.8e-103 378.6 307 61.9
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 6.3e-103 378.3 262 71.8
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 1.1e-102 377.5 307 60.6
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 1.2e-101 374.0 277 67.9
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 2.6e-101 372.9 272 65.4
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 3.5e-101 372.5 249 71.1
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 1.4e-99 367.1 272 64.0
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 1.9e-99 366.7 270 67.8
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 9.4e-99 364.4 323 58.5
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 4.7e-98 362.1 313 58.5
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 1.8e-97 360.1 281 62.6
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 3.0e-97 359.4 317 60.6
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 2.0e-96 356.7 243 69.1
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 3.3e-96 355.9 309 59.2
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 5.7e-96 355.1 321 60.1
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 2.8e-95 352.8 301 58.1
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 2.0e-93 346.7 316 54.1
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.2e-92 343.2 318 57.5
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 6.5e-92 341.7 327 56.9
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 1.2e-90 337.4 312 54.2
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 3.6e-90 335.9 314 56.4
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.5e-88 330.5 263 63.9
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 1.8e-86 323.6 307 53.7
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 1.6e-82 310.5 229 67.2
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 2.6e-80 303.1 308 54.5
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 1.9e-75 287.0 204 67.2
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 3.3e-75 286.2 228 62.7
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 1.0e-73 281.2 308 52.3
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.7e-68 263.8 209 65.1
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.9e-67 260.4 315 46.7
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 2.6e-64 250.0 186 68.3
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 2.4e-62 243.4 168 70.8
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 5.6e-59 232.3 346 41.0
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 9.5e-59 231.5 321 42.1
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 2.1e-58 230.3 180 63.3
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 3.6e-58 229.6 156 69.2
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 1.4e-57 227.6 176 65.9
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 4.0e-57 226.1 193 57.0
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 1.3e-55 221.1 171 63.7
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 8.3e-55 218.4 245 51.0
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.1e-54 218.0 275 46.9
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 3.5e-53 213.0 284 43.7
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 1.0e-52 211.5 221 52.5
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 1.3e-52 211.1 213 54.5
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 2.3e-52 210.3 168 62.5
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 5.6e-51 205.7 147 70.1
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 9.5e-51 204.9 196 56.6
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 6.8e-49 198.7 218 50.0
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 1.4e-46 191.0 139 66.2
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 1.9e-46 190.7 140 68.6
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 3.5e-45 186.4 180 55.0
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 7.8e-45 185.3 314 41.4
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 3.3e-43 179.9 132 68.2
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 3.4e-40 169.9 121 66.9
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 1.4e-38 164.5 117 67.5
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 5.4e-38 162.5 148 54.7
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 1.3e-36 157.9 170 43.5
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 9.6e-35 151.8 180 46.7
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 1.1e-33 148.3 106 69.8
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 4.2e-30 136.3 144 50.0
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 4.5e-24 116.3 116 56.0
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 7.6e-24 115.5 125 51.2
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 2.4e-22 110.5 129 44.2
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 7.4e-19 99.0 58 75.9
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 1.6e-18 97.8 83 60.2
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 1.7e-15 87.8 83 56.6
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 5.1e-12 76.3 85 49.4
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 5.1e-12 76.3 92 44.6
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 2.5e-11 73.9 50 66.0
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 2.5e-11 73.9 64 59.4
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 3.3e-11 73.6 64 59.4
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 9.6e-11 72.0 43 79.1
Atru.chr5.2810 Acer truncatum HOM05D003898 ORTHO05D004642 2.5e-06 57.4 56 50.0
Gohir.D02G117850 Gossypium hirsutum HOM05D034602 ORTHO05D048040 3.2e-06 57.0 36 66.7
Gorai.007G225200 Gossypium raimondii HOM05D034602 ORTHO05D048040 4.2e-06 56.6 34 70.6


User provided reference genes

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