Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011361.2 Cucumis melo HOM05D007232 ORTHO05D000652 1.2e-108 396.7 241 100.0
CsaV3_1G022890 Cucumis sativus L. HOM05D007232 ORTHO05D000652 1.4e-91 340.1 241 86.7
ClCG08G011020 Citrullus lanatus HOM05D007232 ORTHO05D000652 1.2e-82 310.5 241 78.0
Sed0016694 Sechium edule HOM05D007232 ORTHO05D000652 2.1e-68 263.1 243 60.5
Sed0015627 Sechium edule HOM05D007232 ORTHO05D000652 2.2e-65 253.1 241 63.9
PGR042G3281 Punica granatum HOM05D000973 ORTHO05D000652 1.4e-27 127.5 240 37.5
Eucgr.F02438 Eucalyptus grandis HOM05D000973 ORTHO05D000652 4.1e-27 125.9 249 40.6
Potri.005G166600 Populus trichocarpa HOM05D000973 ORTHO05D000652 4.1e-27 125.9 243 34.6
MD15G1326600 Malus domestica HOM05D007232 ORTHO05D000652 2.0e-26 123.6 230 35.7
RcHm_v2.0_Chr7g0239521 Rosa chinensis HOM05D000973 ORTHO05D000652 2.0e-26 123.6 227 37.4
TWI36G0485 Tripterygium wilfordii HOM05D000973 ORTHO05D000652 2.0e-26 123.6 223 41.7
Lalb_Chr08g0241951 Lupinus albus HOM05D000973 ORTHO05D000652 2.6e-26 123.2 236 36.4
Lalb_Chr11g0065501 Lupinus albus HOM05D000973 ORTHO05D000652 3.4e-26 122.9 223 36.3
CSS0050475 Camellia sinensis var. sinensis HOM05D007232 ORTHO05D000652 5.9e-26 122.1 223 35.9
Glyma.04G103700 Glycine max HOM05D000973 ORTHO05D000652 7.7e-26 121.7 226 37.2
Prupe.1G513900 Prunus persica HOM05D000973 ORTHO05D000652 7.7e-26 121.7 229 35.4
FAN08G1947 Fragaria x ananassa HOM05D000973 ORTHO05D000652 1.3e-25 120.9 225 35.1
Lalb_Chr23g0270631 Lupinus albus HOM05D000973 ORTHO05D000652 1.3e-25 120.9 224 33.5
Haze_22246 Corylus avellana HOM05D000973 ORTHO05D000652 1.7e-25 120.6 232 37.5
Cfa013620 Carpinus fangiana HOM05D000973 ORTHO05D000652 3.8e-25 119.4 232 39.2
FAN13G2686 Fragaria x ananassa HOM05D000973 ORTHO05D000652 5.0e-25 119.0 225 34.7
FvH4_5g37770 Fragaria vesca HOM05D000973 ORTHO05D000652 8.5e-25 118.2 225 34.7
FAN18G1204 Fragaria x ananassa HOM05D000973 ORTHO05D000652 8.5e-25 118.2 225 34.7
Psat5g137520 Pisum sativum HOM05D000973 ORTHO05D000652 8.5e-25 118.2 220 32.7
TAR628G1220 Trochodendron aralioides HOM05D000973 ORTHO05D000652 1.1e-24 117.9 242 35.5
Ca_15240_v3 Cicer arietinum L. HOM05D000973 ORTHO05D000652 1.9e-24 117.1 220 32.7
CiPaw.07G181500 Carya illinoinensis HOM05D000973 ORTHO05D000652 2.5e-24 116.7 233 34.8
MD01G1027300 Malus domestica HOM05D007232 ORTHO05D000652 4.2e-24 115.9 230 33.5
FAN04G1532 Fragaria x ananassa HOM05D000973 ORTHO05D000652 1.2e-23 114.4 225 33.8
TWI56G1376 Tripterygium wilfordii HOM05D000973 ORTHO05D000652 1.6e-23 114.0 223 36.3
TAR381G1313 Trochodendron aralioides HOM05D000973 ORTHO05D000652 1.6e-23 114.0 227 34.4
QL12p036377 Quercus lobata HOM05D007232 ORTHO05D000652 2.1e-23 113.6 225 39.1
Glyma.06G104900 Glycine max HOM05D000973 ORTHO05D000652 4.7e-23 112.5 226 34.1
Ciclev10027435m.g Citrus clementina HOM05D007232 ORTHO05D000652 1.4e-22 110.9 220 31.8
Prupe.6G182500 Prunus persica HOM05D007232 ORTHO05D000652 1.5e-21 107.5 231 32.5
Eucgr.F00299 Eucalyptus grandis HOM05D000973 ORTHO05D000652 2.0e-21 107.1 231 37.2
Cfa002682 Carpinus fangiana HOM05D000973 ORTHO05D000652 7.4e-21 105.1 247 31.6
CiPaw.04G098100 Carya illinoinensis HOM05D000973 ORTHO05D000652 9.7e-21 104.8 229 33.6
PGR044G0913 Punica granatum HOM05D007232 ORTHO05D000652 9.7e-21 104.8 234 34.2
Rhsim10G0159300 Rhododendron simsii HOM05D007232 ORTHO05D000652 9.7e-21 104.8 223 31.4
Lj1g0016679 Lotus japonicus HOM05D000973 ORTHO05D000652 1.3e-20 104.4 227 34.4
Sabra07G0074600 Salix brachista HOM05D007232 ORTHO05D000652 1.7e-20 104.0 228 33.3
Hma1.2p1_0237F.1_g099320 Hydrangea macrophylla HOM05D000973 ORTHO05D000652 8.2e-20 101.7 245 31.0
Hma1.2p1_1783F.1_g302128 Hydrangea macrophylla HOM05D000973 ORTHO05D000652 8.2e-20 101.7 245 31.0
PSO781G0167 Papaver somniferum HOM05D000973 ORTHO05D000652 1.8e-19 100.5 225 30.7
QL06p049910 Quercus lobata HOM05D000973 ORTHO05D000652 1.8e-19 100.5 227 34.4
Manes.18G068700 Manihot esculenta HOM05D000973 ORTHO05D000652 4.1e-19 99.4 222 28.4
VMungo1309G1651 Vigna mungo HOM05D000609 ORTHO05D000462 1.6e-18 97.4 220 33.6
MD15G1366200 Malus domestica HOM05D007232 ORTHO05D000652 3.5e-18 96.3 230 30.4
RcHm_v2.0_Chr2g0115011 Rosa chinensis HOM05D000973 ORTHO05D000652 1.0e-17 94.7 226 30.1
Potri.005G077100 Populus trichocarpa HOM05D007232 ORTHO05D000652 1.3e-17 94.4 225 30.2
Sabra05G0063500 Salix brachista HOM05D007232 ORTHO05D000652 1.3e-17 94.4 223 30.5
EL10Ac4g10347 Beta vulgaris HOM05D007232 ORTHO05D000652 2.9e-17 93.2 232 30.6
Phvul.009G029700 Phaseolus vulgaris HOM05D000973 ORTHO05D000652 3.8e-17 92.8 219 33.3
PGSC0003DMG400008558 Solanum tuberosum HOM05D007232 ORTHO05D000652 5.0e-17 92.4 238 38.7
Lsat_1_v5_gn_9_43820 Lactuca sativa HOM05D007232 ORTHO05D000652 1.5e-16 90.9 225 30.7
Actinidia36596 Actinidia chinensis HOM05D007232 ORTHO05D000652 1.9e-16 90.5 212 31.1
Cpa.g.sc36.113 Carica papaya HOM05D000973 ORTHO05D000652 4.2e-16 89.4 226 29.2
AUR62019200 Chenopodium quinoa HOM05D007232 ORTHO05D000652 7.2e-16 88.6 228 29.4
Hma1.2p1_0308F.1_g120090 Hydrangea macrophylla HOM05D007232 ORTHO05D000652 2.1e-15 87.0 219 31.5
Manes.12G136600 Manihot esculenta HOM05D007232 ORTHO05D000652 2.7e-15 86.7 227 30.4
Thecc.01G104000 Theobroma cacao HOM05D007232 ORTHO05D000652 3.6e-15 86.3 223 31.8
Glyma.05G179200 Glycine max HOM05D000973 ORTHO05D000652 4.7e-15 85.9 225 35.1
Duzib147G1351 Durio zibethinus HOM05D007232 ORTHO05D000652 6.1e-15 85.5 224 31.2
Gorai.003G038400 Gossypium raimondii HOM05D007232 ORTHO05D000652 6.1e-15 85.5 225 32.9
Gohir.D03G036600 Gossypium hirsutum HOM05D007232 ORTHO05D000652 1.0e-14 84.7 225 31.6
Lalb_Chr13g0296021 Lupinus albus HOM05D007232 ORTHO05D000652 1.4e-14 84.3 221 31.7
Haze_24953 Corylus avellana HOM05D000973 ORTHO05D000652 2.3e-14 83.6 209 29.7
Ca_17729_v3 Cicer arietinum L. HOM05D000973 ORTHO05D000652 3.0e-14 83.2 224 31.7
Lalb_Chr12g0203771 Lupinus albus HOM05D007232 ORTHO05D000652 3.0e-14 83.2 220 35.5
Aqoxy4G02373 Aquilegia oxysepala HOM05D000973 ORTHO05D000652 5.2e-14 82.4 224 28.6
Glyma.08G136900 Glycine max HOM05D000973 ORTHO05D000652 5.2e-14 82.4 232 33.2
AUR62000030 Chenopodium quinoa HOM05D007232 ORTHO05D000652 6.7e-14 82.0 227 27.8
MBI02_g42091_MAGBIO Magnolia biondii HOM05D000973 ORTHO05D000652 6.7e-14 82.0 225 28.0
Duzib264G0914 Durio zibethinus HOM05D007232 ORTHO05D000652 8.8e-14 81.6 222 32.9
TPR.G2188 Trifolium pratense HOM05D007232 ORTHO05D000652 8.8e-14 81.6 220 35.9
PSO541G5618 Papaver somniferum HOM05D000973 ORTHO05D000652 1.2e-13 81.3 206 29.1
Sp4g01240 Schrenkiella parvula HOM05D007232 ORTHO05D000652 2.6e-13 80.1 220 33.2
Gohir.A02G144000 Gossypium hirsutum HOM05D007232 ORTHO05D000652 4.4e-13 79.3 225 30.7
Medtr3g074150 Medicago truncatula HOM05D000973 ORTHO05D000652 4.4e-13 79.3 231 31.2
Oeu056593.1 Olea europaea HOM05D007232 ORTHO05D000652 1.3e-12 77.8 233 26.2
Psat7g055040 Pisum sativum HOM05D007232 ORTHO05D000652 1.7e-12 77.4 221 30.8
Peaxi162Scf00295g00092 Petunia axillaris HOM05D007232 ORTHO05D000652 2.8e-12 76.6 236 27.5
CARHR113340 Cardamine hirsuta HOM05D007232 ORTHO05D000652 3.7e-12 76.3 218 30.7
BcaC07g41090 Brassica carinata HOM05D007232 ORTHO05D000652 4.8e-12 75.9 220 33.6
C08p40920 Brassica napus HOM05D007232 ORTHO05D000652 4.8e-12 75.9 220 33.6
FvH4_1g21180 Fragaria vesca HOM05D007232 ORTHO05D000652 4.8e-12 75.9 225 34.7
Thhalv10000276m.g Eutrema salsugineum HOM05D007232 ORTHO05D000652 6.3e-12 75.5 220 31.8
FAN19G3039 Fragaria x ananassa HOM05D007232 ORTHO05D000652 6.3e-12 75.5 225 34.2
THA.LOC104807704 Tarenaya hassleriana HOM05D007232 ORTHO05D000652 1.8e-11 73.9 220 30.5
Aa31LG7G14550 Aethionema arabicum HOM05D007232 ORTHO05D000652 3.1e-11 73.2 216 30.1
BolC4t26712H Brassica oleracea HOM05D007232 ORTHO05D000652 3.1e-11 73.2 218 30.7
ATR0564G206 Amborella trichopoda HOM05D000973 ORTHO05D000652 4.1e-11 72.8 226 34.1
CAN.G725.2 Capsicum annuum HOM05D007232 ORTHO05D000652 4.1e-11 72.8 230 27.4
Gohir.D12G096300 Gossypium hirsutum HOM05D007232 ORTHO05D000652 4.1e-11 72.8 221 27.1
Gorai.008G104500 Gossypium raimondii HOM05D007232 ORTHO05D000652 4.1e-11 72.8 221 27.1
BcaC02g08732 Brassica carinata HOM05D007232 ORTHO05D000652 5.3e-11 72.4 218 30.7
C04p51230 Brassica napus HOM05D007232 ORTHO05D000652 5.3e-11 72.4 218 30.7
BolC8t51657H Brassica oleracea HOM05D007232 ORTHO05D000652 5.3e-11 72.4 218 33.0
Migut.H02369 Erythranthe guttata HOM05D007232 ORTHO05D000652 7.0e-11 72.0 232 28.0
Solyc04g054960.1 Solanum lycopersicum HOM05D007232 ORTHO05D000652 7.0e-11 72.0 227 29.1
arahy.Tifrunner.gnm1.ann1.VXW06X Arachis hypogaea HOM05D000973 ORTHO05D000652 9.1e-11 71.6 233 27.0
Carub.0004s0134 Capsella rubella HOM05D007232 ORTHO05D000652 9.1e-11 71.6 220 31.8
PGSC0003DMG400020617 Solanum tuberosum HOM05D007232 ORTHO05D000652 1.6e-10 70.9 229 26.6
FAN23G0488 Fragaria x ananassa HOM05D007232 ORTHO05D000652 2.0e-10 70.5 222 34.7
Ah.06g193060 Amaranthus hybridus HOM05D007232 ORTHO05D000652 2.7e-10 70.1 205 29.8
BcaB08g35048 Brassica carinata HOM05D007232 ORTHO05D000652 2.7e-10 70.1 221 32.1
FAN28G0479 Fragaria x ananassa HOM05D007232 ORTHO05D000652 2.7e-10 70.1 222 34.2
MD08G1180500 Malus domestica HOM05D007232 ORTHO05D000652 2.7e-10 70.1 173 29.5
Nn1g05316 Nelumbo nucifera HOM05D000973 ORTHO05D000652 2.7e-10 70.1 245 28.6
Nn1g05317 Nelumbo nucifera HOM05D000973 ORTHO05D000652 2.7e-10 70.1 245 28.6
AT2G22180 Arabidopsis thaliana HOM05D007232 ORTHO05D000652 3.5e-10 69.7 221 31.2
Peaxi162Scf01263g00012 Petunia axillaris HOM05D007232 ORTHO05D000652 4.5e-10 69.3 236 27.5
Atru.chr4.115 Acer truncatum HOM05D007232 ORTHO05D000652 5.9e-10 68.9 229 29.7
AL4G11660 Arabidopsis lyrata HOM05D007232 ORTHO05D000652 5.9e-10 68.9 220 34.5
A09p57710 Brassica napus HOM05D007232 ORTHO05D000652 5.9e-10 68.9 218 31.2
BraA09t41164Z Brassica rapa HOM05D007232 ORTHO05D000652 5.9e-10 68.9 218 31.2
Sopen04g024800 Solanum pennellii HOM05D007232 ORTHO05D000652 7.7e-10 68.6 229 27.1
COL.COLO4_09942 Corchorus olitorius HOM05D007232 ORTHO05D000652 1.0e-09 68.2 228 34.6
Solyc05g051890.1 Solanum lycopersicum HOM05D007232 ORTHO05D000652 1.7e-09 67.4 229 27.1
CAN.G383.12 Capsicum annuum HOM05D007232 ORTHO05D000652 2.2e-09 67.0 232 25.4
VMungo0251G1798 Vigna mungo HOM05D007232 ORTHO05D000652 2.2e-09 67.0 230 29.6
Phvul.002G255000 Phaseolus vulgaris HOM05D000973 ORTHO05D000652 2.9e-09 66.6 228 28.1
TWI74G0906 Tripterygium wilfordii HOM05D007232 ORTHO05D000652 2.9e-09 66.6 185 31.4
Cpa.g.c29749 Carica papaya HOM05D007232 ORTHO05D000652 5.0e-09 65.9 226 29.6
Lalb_Chr11g0075311 Lupinus albus HOM05D007232 ORTHO05D000652 5.0e-09 65.9 223 27.8
Medtr8g090320 Medicago truncatula HOM05D007232 ORTHO05D000652 6.5e-09 65.5 217 32.3
PGSC0003DMG400021819 Solanum tuberosum HOM05D007232 ORTHO05D000652 6.5e-09 65.5 230 27.8
BcaC02g08684 Brassica carinata HOM05D007232 ORTHO05D000652 8.5e-09 65.1 218 33.9
COL.COLO4_16431 Corchorus olitorius HOM05D007232 ORTHO05D000652 1.1e-08 64.7 35 74.3
AL7G11950 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.5e-08 64.3 213 31.0
THA.LOC104804156 Tarenaya hassleriana HOM05D007232 ORTHO05D000652 1.5e-08 64.3 222 28.8
Nitab4.5_0000104g0220 Nicotiana tabacum HOM05D007232 ORTHO05D000652 1.9e-08 63.9 234 26.5
Sed0026403 Sechium edule HOM05D000234 ORTHO05D001258 2.5e-08 63.5 253 26.1
Actinidia10311 Actinidia chinensis HOM05D000973 ORTHO05D000652 3.2e-08 63.2 173 29.5
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 3.2e-08 63.2 229 29.7
Sp7g36140 Schrenkiella parvula HOM05D007232 ORTHO05D000652 3.2e-08 63.2 220 31.4
AL4G20640 Arabidopsis lyrata HOM05D000973 ORTHO05D000652 5.5e-08 62.4 225 26.2
Dinv16299 Davidia involucrata HOM05D007232 ORTHO05D000652 5.5e-08 62.4 154 31.2
Nitab4.5_0002378g0010 Nicotiana tabacum HOM05D007232 ORTHO05D000652 7.2e-08 62.0 219 27.9
Manes.11G112400 Manihot esculenta HOM05D000973 ORTHO05D000652 1.2e-07 61.2 223 26.0
Actinidia37187 Actinidia chinensis HOM05D000973 ORTHO05D000652 1.6e-07 60.8 223 23.8
TAR636G1424 Trochodendron aralioides HOM05D000973 ORTHO05D000652 1.6e-07 60.8 225 30.2
A04p16690 Brassica napus HOM05D007232 ORTHO05D000652 2.1e-07 60.5 219 33.3
BraA04t17302Z Brassica rapa HOM05D007232 ORTHO05D000652 2.1e-07 60.5 219 33.3
Sopen05g030420 Solanum pennellii HOM05D007232 ORTHO05D000652 2.1e-07 60.5 229 25.8
Ciclev10016351m.g Citrus clementina HOM05D000973 ORTHO05D000652 2.7e-07 60.1 251 31.1
Manes.04G052400 Manihot esculenta HOM05D000973 ORTHO05D000652 2.7e-07 60.1 225 24.9
TAR376G0669 Trochodendron aralioides HOM05D000973 ORTHO05D000652 3.6e-07 59.7 33 75.8
PGSC0003DMG400002014 Solanum tuberosum HOM05D000973 ORTHO05D000652 6.1e-07 58.9 229 26.2
Medtr3g078800 Medicago truncatula HOM05D000973 ORTHO05D000652 1.0e-06 58.2 224 27.2
BraA03t11888Z Brassica rapa HOM05D000973 ORTHO05D000652 1.4e-06 57.8 234 24.8
CARHR246970 Cardamine hirsuta HOM05D007232 ORTHO05D000652 1.4e-06 57.8 219 28.8
Potri.009G158900 Populus trichocarpa HOM05D000973 ORTHO05D000652 1.4e-06 57.8 226 27.0
TAR544G0003 Trochodendron aralioides HOM05D000973 ORTHO05D000652 1.4e-06 57.8 226 27.9
Thecc.08G109400 Theobroma cacao HOM05D000973 ORTHO05D000652 1.8e-06 57.4 32 71.9
GSVIVG01037448001 Vitis vinifera HOM05D000973 ORTHO05D000652 2.3e-06 57.0 227 28.2
EL10Ac9g22378 Beta vulgaris HOM05D000973 ORTHO05D000652 3.0e-06 56.6 226 23.9
CARHR119400 Cardamine hirsuta HOM05D000973 ORTHO05D000652 3.0e-06 56.6 223 25.6
THA.LOC104800491 Tarenaya hassleriana HOM05D000973 ORTHO05D000652 3.0e-06 56.6 226 25.7
HPP92_016345 Vanilla planifolia HOM05D007232 ORTHO05D000652 3.0e-06 56.6 216 24.5
CANSAT54G0667 Cannabis sativa HOM05D000973 ORTHO05D000652 4.0e-06 56.2 246 22.8
CAN.G864.5 Capsicum annuum HOM05D000973 ORTHO05D000652 4.0e-06 56.2 235 24.7
Sc03g0002150 Simmondsia chinensis HOM05D007232 ORTHO05D000652 4.0e-06 56.2 218 22.9
arahy.Tifrunner.gnm1.ann1.Q07BGG Arachis hypogaea HOM05D000973 ORTHO05D000652 5.2e-06 55.8 232 29.7
C04p56350 Brassica napus HOM05D000973 ORTHO05D000652 5.2e-06 55.8 227 24.2
Cfa010260 Carpinus fangiana HOM05D000973 ORTHO05D000652 5.2e-06 55.8 230 23.9
ClCG03G014140 Citrullus lanatus HOM05D000973 ORTHO05D000652 5.2e-06 55.8 232 25.9
Glyma.02G274400 Glycine max HOM05D000973 ORTHO05D000652 5.2e-06 55.8 224 24.6
Sc21g0000220 Simmondsia chinensis HOM05D000973 ORTHO05D000652 5.2e-06 55.8 233 25.8
Atru.chr3.2864 Acer truncatum HOM05D000973 ORTHO05D000652 6.8e-06 55.5 226 29.2
Aa31LG1G13650 Aethionema arabicum HOM05D000973 ORTHO05D000652 6.8e-06 55.5 228 25.9
BcaB01g03045 Brassica carinata HOM05D000973 ORTHO05D000652 6.8e-06 55.5 234 24.8
BcaC02g08284 Brassica carinata HOM05D000973 ORTHO05D000652 6.8e-06 55.5 227 23.8
BolC4t27165H Brassica oleracea HOM05D000973 ORTHO05D000652 6.8e-06 55.5 227 23.8
CSS0043006 Camellia sinensis var. sinensis HOM05D000973 ORTHO05D000652 6.8e-06 55.5 246 26.8
TAR633G1053 Trochodendron aralioides HOM05D000973 ORTHO05D000652 6.8e-06 55.5 226 27.4
A03p26770 Brassica napus HOM05D000973 ORTHO05D000652 8.8e-06 55.1 237 24.5
Sopen09g001970 Solanum pennellii HOM05D000973 ORTHO05D000652 8.8e-06 55.1 234 26.9


User provided reference genes

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