Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 3.0e-150 535.4 324 100.0
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 1.7e-145 519.6 329 94.2
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 8.5e-121 437.6 338 86.7
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 8.9e-86 321.2 336 65.8
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 5.4e-59 232.3 382 55.0
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 1.0e-57 228.0 358 50.8
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 1.7e-57 227.3 343 47.8
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 3.3e-56 223.0 347 49.3
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 4.3e-56 222.6 350 50.3
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 1.6e-55 220.7 365 50.7
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 2.1e-55 220.3 340 46.8
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 2.1e-55 220.3 349 48.7
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 6.2e-55 218.8 347 50.4
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 8.1e-55 218.4 358 45.3
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 1.4e-54 217.6 338 55.6
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 5.3e-54 215.7 351 49.3
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 5.3e-54 215.7 366 50.5
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 1.2e-53 214.5 350 46.6
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 1.2e-53 214.5 351 47.9
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.5e-53 214.2 355 45.9
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 2.6e-53 213.4 349 55.0
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 4.4e-53 212.6 349 46.1
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 9.9e-53 211.5 350 52.6
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 3.8e-52 209.5 364 44.8
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 8.4e-52 208.4 343 51.6
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 5.4e-51 205.7 353 50.7
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 5.4e-51 205.7 353 51.3
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 1.6e-50 204.1 369 47.7
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 2.1e-50 203.8 354 44.9
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 3.5e-50 203.0 351 43.9
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 3.5e-50 203.0 352 46.0
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 4.6e-50 202.6 352 46.0
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 4.6e-50 202.6 344 52.6
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 4.6e-50 202.6 380 46.8
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 1.0e-49 201.4 342 49.4
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 1.0e-49 201.4 352 46.6
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 1.7e-49 200.7 343 46.4
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 1.7e-49 200.7 343 46.4
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 1.7e-49 200.7 343 46.4
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.7e-49 200.7 351 43.3
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 1.7e-49 200.7 338 48.2
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 2.3e-49 200.3 350 43.4
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 3.0e-49 199.9 351 47.0
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 3.9e-49 199.5 326 46.9
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 5.1e-49 199.1 356 46.1
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 8.7e-49 198.4 365 44.4
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 1.1e-48 198.0 326 48.5
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 1.5e-48 197.6 350 48.0
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 1.5e-48 197.6 370 50.0
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 1.5e-48 197.6 347 51.9
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 1.9e-48 197.2 361 47.1
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 1.9e-48 197.2 343 53.1
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 2.5e-48 196.8 366 44.3
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 3.3e-48 196.4 367 44.7
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 5.6e-48 195.7 361 41.8
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 1.3e-47 194.5 328 45.4
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 1.3e-47 194.5 365 47.4
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 1.3e-47 194.5 337 50.7
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 1.3e-47 194.5 300 52.3
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 1.3e-47 194.5 368 44.6
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 4.8e-47 192.6 353 46.2
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 6.2e-47 192.2 368 46.2
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 1.8e-46 190.7 337 48.1
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 2.4e-46 190.3 364 40.1
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 2.4e-46 190.3 371 41.5
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 5.3e-46 189.1 352 43.5
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 1.5e-45 187.6 338 47.9
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 1.5e-45 187.6 361 44.3
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 3.4e-45 186.4 353 47.0
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 1.7e-44 184.1 338 50.3
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 2.9e-44 183.3 246 48.0
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 4.9e-44 182.6 311 43.7
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 6.4e-44 182.2 403 38.0
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 8.4e-44 181.8 347 41.2
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 8.4e-44 181.8 334 51.2
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 1.4e-43 181.0 350 48.0
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 1.9e-43 180.6 356 45.8
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 2.4e-43 180.3 362 45.3
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 3.2e-43 179.9 335 44.8
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 4.2e-43 179.5 340 45.3
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 4.2e-43 179.5 307 50.8
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 4.2e-43 179.5 330 46.1
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 1.2e-42 177.9 330 50.9
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 1.6e-42 177.6 362 47.0
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 3.5e-42 176.4 334 47.3
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 3.5e-42 176.4 342 37.1
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 1.0e-41 174.9 337 45.1
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 1.0e-41 174.9 317 44.2
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.8e-41 174.1 341 46.0
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 5.1e-41 172.6 340 47.1
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 5.1e-41 172.6 355 47.6
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.1e-40 171.4 315 43.8
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 1.5e-40 171.0 341 48.7
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 1.9e-40 170.6 293 47.4
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 4.3e-40 169.5 349 43.0
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 5.6e-40 169.1 369 43.1
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 7.4e-40 168.7 330 45.5
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 9.6e-40 168.3 331 43.8
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 9.6e-40 168.3 331 43.8
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 9.6e-40 168.3 331 43.8
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 9.6e-40 168.3 346 45.4
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 1.6e-39 167.5 332 42.8
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.6e-39 167.5 336 44.9
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 2.8e-39 166.8 353 45.6
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 2.8e-39 166.8 308 44.2
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 4.8e-39 166.0 332 41.6
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 6.2e-39 165.6 350 42.9
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 6.2e-39 165.6 332 41.6
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 6.2e-39 165.6 350 42.9
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 1.1e-38 164.9 252 43.7
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 1.4e-38 164.5 348 43.1
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 1.8e-38 164.1 363 43.8
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 1.8e-38 164.1 341 39.9
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 3.1e-38 163.3 348 42.8
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 3.1e-38 163.3 349 48.4
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 3.1e-38 163.3 344 43.9
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 5.3e-38 162.5 341 45.7
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 5.3e-38 162.5 348 43.4
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 6.9e-38 162.2 348 42.8
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 9.0e-38 161.8 342 48.0
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 1.2e-37 161.4 348 44.3
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 1.3e-36 157.9 343 38.5
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 2.9e-36 156.8 363 46.3
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 2.9e-36 156.8 363 46.3
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 2.9e-36 156.8 363 46.3
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 4.9e-36 156.0 339 40.1
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 6.5e-36 155.6 363 42.7
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 1.1e-35 154.8 350 43.7
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 1.4e-35 154.5 331 38.4
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 7.1e-35 152.1 344 47.7
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 3.5e-34 149.8 352 40.9
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 2.3e-33 147.1 298 47.3
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 2.3e-33 147.1 342 38.3
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 5.1e-33 146.0 333 36.0
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 8.7e-33 145.2 325 36.3
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 8.7e-33 145.2 187 46.0
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 2.5e-32 143.7 233 43.8
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 4.3e-32 142.9 327 35.2
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 9.6e-32 141.7 324 43.5
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 1.3e-31 141.4 365 40.5
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 1.3e-31 141.4 181 45.9
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 3.7e-31 139.8 354 32.2
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 8.2e-31 138.7 325 35.7
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 6.9e-30 135.6 359 42.3
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 2.0e-29 134.0 309 33.3
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 3.4e-29 133.3 245 44.5
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 1.3e-28 131.3 215 39.1
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 5.0e-28 129.4 362 34.5
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 1.1e-27 128.3 325 33.8
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 2.5e-27 127.1 310 31.3
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 3.0e-25 120.2 325 32.3
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 4.3e-24 116.3 227 39.6
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 1.4e-22 111.3 361 33.5
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 9.0e-22 108.6 249 38.2
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 1.2e-21 108.2 326 34.7
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 2.0e-21 107.5 371 32.1
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 3.8e-20 103.2 356 28.9
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 5.0e-20 102.8 336 32.1
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 5.5e-19 99.4 87 57.5
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 2.1e-18 97.4 307 37.1
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 1.8e-17 94.4 347 33.7
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 3.9e-17 93.2 152 42.1
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 3.7e-15 86.7 399 26.6
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 3.1e-14 83.6 423 27.0
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 2.9e-12 77.0 334 39.5
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 1.1e-11 75.1 203 38.9
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 1.4e-11 74.7 158 39.2
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 8.8e-09 65.5 101 42.6
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 8.8e-09 65.5 173 31.8
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 3.1e-06 57.0 168 28.0


User provided reference genes

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