Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 2.0e-186 655.6 324 100.0
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 2.2e-169 599.0 324 92.0
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 7.1e-152 540.8 324 83.0
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 7.9e-151 537.3 324 81.2
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 7.4e-141 504.2 364 72.8
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 3.9e-134 481.9 325 71.7
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 4.3e-133 478.4 319 71.2
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 6.3e-132 474.6 322 72.7
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 3.1e-131 472.2 317 73.2
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 9.1e-131 470.7 324 70.7
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 1.5e-130 469.9 324 71.0
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 2.6e-130 469.2 319 70.2
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 5.9e-130 468.0 322 70.8
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 2.2e-129 466.1 319 72.1
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 2.2e-129 466.1 319 70.8
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 1.1e-128 463.8 324 70.4
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 1.1e-128 463.8 321 71.0
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 1.9e-128 463.0 319 69.0
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 7.2e-128 461.1 319 69.9
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 1.2e-127 460.3 319 70.2
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 1.6e-127 459.9 318 70.1
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 1.0e-126 457.2 324 69.1
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 1.0e-126 457.2 319 70.5
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 1.4e-126 456.8 324 69.4
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 2.3e-126 456.1 324 69.1
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 3.9e-126 455.3 325 70.2
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 1.1e-125 453.8 336 66.7
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 2.0e-125 453.0 317 70.0
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 1.7e-124 449.9 324 66.7
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 3.7e-124 448.7 324 69.4
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 3.7e-124 448.7 319 68.3
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 6.3e-124 448.0 324 69.1
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 1.1e-123 447.2 319 69.0
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 1.4e-123 446.8 324 67.3
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 1.8e-123 446.4 324 67.3
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 1.8e-123 446.4 324 67.6
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 5.3e-123 444.9 324 67.3
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 5.3e-123 444.9 324 67.3
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 5.3e-123 444.9 324 67.9
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 1.5e-122 443.4 324 65.7
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 1.5e-122 443.4 321 65.7
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 3.5e-122 442.2 324 67.0
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 1.3e-121 440.3 325 67.4
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 2.9e-121 439.1 325 67.1
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 3.8e-121 438.7 324 67.0
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 1.1e-120 437.2 324 66.4
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 5.5e-120 434.9 320 66.9
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.2e-119 433.7 324 64.5
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 1.6e-119 433.3 324 66.4
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 2.7e-119 432.6 325 64.3
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 3.6e-119 432.2 324 64.2
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 4.7e-119 431.8 324 63.9
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.4e-118 430.3 323 64.1
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 1.4e-118 430.3 322 64.6
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 2.3e-118 429.5 320 65.9
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 3.0e-118 429.1 324 64.8
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 5.2e-118 428.3 338 62.1
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 6.7e-118 427.9 317 64.7
Duzib116G0262 Durio zibethinus HOM05D005792 ORTHO05D007171 8.8e-118 427.6 290 69.3
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 1.1e-117 427.2 316 65.2
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 3.3e-117 425.6 324 65.7
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 4.4e-117 425.2 295 69.8
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 7.4e-117 424.5 312 65.7
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 9.7e-117 424.1 325 63.7
Hund05134 Selenicereus undatus HOM05D005792 ORTHO05D007171 1.3e-116 423.7 321 62.6
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 6.3e-116 421.4 316 63.9
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 1.1e-115 420.6 325 63.4
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 1.8e-115 419.9 325 62.8
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 5.3e-115 418.3 325 64.0
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 1.2e-114 417.2 325 62.8
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 1.6e-114 416.8 316 63.3
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 1.0e-113 414.1 319 64.3
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 1.7e-113 413.3 316 63.3
unitig_747.g21523 Utricularia gibba HOM05D005792 ORTHO05D007171 1.7e-113 413.3 314 63.1
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 2.9e-113 412.5 324 63.0
Sc26g0004560 Simmondsia chinensis HOM05D005792 ORTHO05D007171 3.8e-113 412.1 316 62.3
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 5.0e-113 411.8 304 66.4
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.5e-112 410.2 296 69.9
PGSC0003DMG400029326 Solanum tuberosum HOM05D005792 ORTHO05D007171 3.2e-112 409.1 354 58.5
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 9.4e-112 407.5 317 62.8
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 3.6e-111 405.6 319 62.7
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.8e-110 403.3 324 62.3
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 2.3e-110 402.9 319 61.1
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 6.8e-110 401.4 371 56.6
SalBow7G0964 Salvia bowleyana HOM05D005792 ORTHO05D007171 9.7e-109 397.5 311 62.1
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 3.7e-108 395.6 296 67.6
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 6.3e-108 394.8 297 66.0
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 3.1e-107 392.5 319 62.1
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 4.5e-106 388.7 322 60.2
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 4.5e-106 388.7 365 54.8
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 1.6e-103 380.2 299 64.9
SGA_v2.0_scaffold351G49656 Striga asiatica HOM05D005792 ORTHO05D007171 1.4e-102 377.1 324 59.3
BcaC08g47109 Brassica carinata HOM05D005792 ORTHO05D007171 1.0e-94 350.9 316 58.9
COL.COLO4_26053 Corchorus olitorius HOM05D005792 ORTHO05D007171 4.0e-94 349.0 324 58.0
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 1.1e-91 340.9 316 56.0
Pp3c4_24330 Physcomitrium patens HOM05D005792 ORTHO05D007171 1.2e-90 337.4 331 53.8
Nitab4.5_0000588g0300 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.3e-89 334.0 325 52.9
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 1.7e-89 333.6 316 53.5
DCAR_013899 Daucus carota HOM05D005792 ORTHO05D007171 5.6e-88 328.6 319 53.3
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 8.0e-87 324.7 296 56.8
Phvul.009G020900 Phaseolus vulgaris HOM05D005792 ORTHO05D007171 8.0e-87 324.7 232 68.5
SHI08027 Sapria himalayana HOM05D005792 ORTHO05D007171 2.6e-85 319.7 307 52.1
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 4.9e-84 315.5 265 58.9
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 1.3e-81 307.4 297 53.9
SMO174G0111 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 1.1e-80 304.3 321 50.2
Zm00001eb104070 Zea mays HOM05D005792 ORTHO05D007171 4.3e-80 302.4 246 61.0
arahy.Tifrunner.gnm1.ann1.CIDL5D Arachis hypogaea HOM05D005792 ORTHO05D007171 6.6e-73 278.5 195 67.7
Mapoly0135s0031 Marchantia polymorpha HOM05D005792 ORTHO05D007171 2.3e-70 270.0 316 45.9
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 2.2e-68 263.5 206 64.6
Oeu021471.1 Olea europaea HOM05D005792 ORTHO05D007171 2.1e-66 256.9 196 63.8
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 4.6e-66 255.8 181 69.1
MSTRG.25290 Avicennia marina HOM05D005792 ORTHO05D007171 1.0e-65 254.6 200 60.5
SEGI_22358 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 1.3e-65 254.2 215 58.1
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 8.9e-62 241.5 237 54.4
Zm00001eb321160 Zea mays HOM05D005792 ORTHO05D007171 2.3e-57 226.9 227 53.7
CBR_g50912 Chara braunii HOM05D005792 ORTHO05D007171 4.4e-53 212.6 399 35.1
TPR.G38109 Trifolium pratense HOM05D005792 ORTHO05D007171 7.1e-51 205.3 319 39.5
TPR.G753 Trifolium pratense HOM05D005792 ORTHO05D007171 7.1e-51 205.3 137 71.5
AagrBONN_evm.TU.Sc2ySwM_117.3246 Anthoceros agrestis HOM05D005792 ORTHO05D007171 3.0e-49 199.9 230 49.6
CDE05G1591 Ceratophyllum demersum HOM05D005792 ORTHO05D007171 9.9e-45 184.9 149 57.0
Actinidia17028 Actinidia chinensis HOM05D005792 ORTHO05D007171 8.4e-44 181.8 162 56.2
CSS0030340 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 4.3e-40 169.5 137 59.9
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 3.0e-33 146.7 314 32.8
TAR625G0970 Trochodendron aralioides HOM05D005792 ORTHO05D007171 3.3e-32 143.3 105 65.7
HPP92_014386 Vanilla planifolia HOM05D005792 ORTHO05D007171 2.6e-29 133.7 113 56.6
Cre06.g308100 Chlamydomonas reinhardtii HOM05D005792 ORTHO05D007171 3.8e-28 129.8 322 30.1
SalBow6G2635 Salvia bowleyana HOM05D005792 ORTHO05D007171 7.1e-27 125.6 83 67.5
Hund05135 Selenicereus undatus HOM05D005792 ORTHO05D007171 7.1e-27 125.6 295 29.8
CBR_g22029 Chara braunii HOM05D005792 ORTHO05D007171 1.1e-22 111.7 135 43.7
SMO174G0016 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 3.0e-17 93.6 83 55.4
ATR0661G053 Amborella trichopoda HOM05D005792 ORTHO05D007171 2.9e-12 77.0 65 63.1
Sabra02G0010700 Salix brachista HOM05D000201 ORTHO05D000490 1.1e-11 75.1 59 59.3
COL.COLO4_12452 Corchorus olitorius HOM05D005792 ORTHO05D007171 1.9e-11 74.3 90 48.9
Mapoly0033s0029 Marchantia polymorpha HOM05D005792 ORTHO05D007171 2.7e-10 70.5 90 41.1
SMO174G0053 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 2.7e-10 70.5 80 47.5
Cpa.g.sc26.236 Carica papaya HOM05D005792 ORTHO05D007171 1.3e-07 61.6 36 83.3
SEGI_02138 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 2.4e-06 57.4 55 47.3


User provided reference genes

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