Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011310.2 Cucumis melo HOM05D000540 ORTHO05D008105 2.2e-48 195.3 95 100.0
CsaV3_2G032570 Cucumis sativus L. HOM05D000540 ORTHO05D008105 5.1e-42 174.1 87 94.3
Hund07747 Selenicereus undatus HOM05D000540 ORTHO05D008105 7.0e-31 137.1 91 70.3
CANSAT16G0016 Cannabis sativa HOM05D000540 ORTHO05D008105 2.0e-30 135.6 95 68.4
Sc06g0008940 Simmondsia chinensis HOM05D000540 ORTHO05D008105 2.6e-30 135.2 91 71.4
Eucgr.D00430 Eucalyptus grandis HOM05D000540 ORTHO05D008105 5.9e-30 134.0 92 69.6
Lj2A1229G102 Lonicera japonica HOM05D000540 ORTHO05D000681 5.9e-30 134.0 95 67.4
Solyc00g500273.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 7.7e-30 133.7 95 68.4
PGSC0003DMG400021035 Solanum tuberosum HOM05D000540 ORTHO05D008105 7.7e-30 133.7 95 68.4
Ah.08g216160 Amaranthus hybridus HOM05D000540 ORTHO05D008105 1.0e-29 133.3 78 78.2
Solyc00g500245.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.0e-29 133.3 94 68.1
Nn1g09992 Nelumbo nucifera HOM05D000540 ORTHO05D008105 3.8e-29 131.3 95 67.4
Nn1g10001 Nelumbo nucifera HOM05D000540 ORTHO05D008105 3.8e-29 131.3 95 67.4
Nn1g10092 Nelumbo nucifera HOM05D000540 ORTHO05D008105 3.8e-29 131.3 95 67.4
RcHm_v2.0_Chr7g0212161 Rosa chinensis HOM05D000540 ORTHO05D008105 5.0e-29 131.0 87 71.3
FvH4_5g23230 Fragaria vesca HOM05D000540 ORTHO05D008105 6.5e-29 130.6 87 71.3
FAN04G1833 Fragaria x ananassa HOM05D000540 ORTHO05D008105 6.5e-29 130.6 87 71.3
FAN18G0695 Fragaria x ananassa HOM05D000540 ORTHO05D008105 6.5e-29 130.6 87 71.3
FAN18G3733 Fragaria x ananassa HOM05D000540 ORTHO05D008105 6.5e-29 130.6 87 71.3
Nitab4.5_0011987g0020 Nicotiana tabacum HOM05D000540 ORTHO05D008105 6.5e-29 130.6 94 67.0
DCAR_015262 Daucus carota HOM05D000540 ORTHO05D008105 1.1e-28 129.8 93 69.9
FAN08G1475 Fragaria x ananassa HOM05D000540 ORTHO05D008105 1.9e-28 129.0 87 70.1
Thecc.02G009100 Theobroma cacao HOM05D000540 ORTHO05D008105 1.9e-28 129.0 85 74.1
GSVIVG01038017001 Vitis vinifera HOM05D000540 ORTHO05D008105 2.5e-28 128.6 95 64.2
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 5.5e-28 127.5 90 65.6
MD02G1217700 Malus domestica HOM05D000540 ORTHO05D008105 5.5e-28 127.5 95 67.4
MD07G1100000 Malus domestica HOM05D000540 ORTHO05D008105 7.2e-28 127.1 95 66.3
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 1.6e-27 125.9 91 63.7
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 2.1e-27 125.6 92 66.3
Prupe.2G123500 Prunus persica HOM05D000540 ORTHO05D008105 2.1e-27 125.6 95 67.4
Zm00001eb321840 Zea mays HOM05D000540 ORTHO05D008105 3.6e-27 124.8 95 64.2
Gohir.A03G217200 Gossypium hirsutum HOM05D000540 ORTHO05D008105 4.7e-27 124.4 85 72.9
Zm00001eb219510 Zea mays HOM05D000540 ORTHO05D008105 4.7e-27 124.4 95 64.2
Zm00001eb003570 Zea mays HOM05D000540 ORTHO05D008105 1.4e-26 122.9 90 63.3
Zm00001eb049250 Zea mays HOM05D000540 ORTHO05D008105 1.4e-26 122.9 90 63.3
Zm00001eb321850 Zea mays HOM05D000540 ORTHO05D008105 1.4e-26 122.9 95 63.2
Ciclev10002977m.g Citrus clementina HOM05D000540 ORTHO05D008105 3.0e-26 121.7 79 68.4
Atru.chr7.1082 Acer truncatum HOM05D000540 ORTHO05D008105 5.2e-26 120.9 95 62.1
Gohir.D02G238800 Gossypium hirsutum HOM05D000540 ORTHO05D008105 5.2e-26 120.9 85 71.8
Gorai.005G267300 Gossypium raimondii HOM05D000540 ORTHO05D008105 5.2e-26 120.9 85 71.8
Manes.07G029100 Manihot esculenta HOM05D000540 ORTHO05D008105 5.2e-26 120.9 85 69.4
Nitab4.5_0009703g0070 Nicotiana tabacum HOM05D000540 ORTHO05D008105 5.2e-26 120.9 87 66.7
Atru.chr1.3246 Acer truncatum HOM05D000540 ORTHO05D008105 1.2e-25 119.8 95 61.1
Nitab4.5_0001153g0100 Nicotiana tabacum HOM05D000540 ORTHO05D008105 1.2e-25 119.8 93 60.2
Medtr7g106780 Medicago truncatula HOM05D000540 ORTHO05D008105 4.4e-25 117.9 92 63.0
Rhsim11G0036800 Rhododendron simsii HOM05D000540 ORTHO05D008105 5.7e-25 117.5 108 60.2
Lj3g0015602 Lotus japonicus HOM05D000540 ORTHO05D008105 1.1e-23 113.2 88 63.6
AT5G47320 Arabidopsis thaliana HOM05D000540 ORTHO05D008105 1.8e-23 112.5 77 72.7
BcaB04g20419 Brassica carinata HOM05D000540 ORTHO05D008105 1.8e-23 112.5 77 72.7
BcaB06g26544 Brassica carinata HOM05D000540 ORTHO05D008105 1.8e-23 112.5 77 72.7
BcaC06g35575 Brassica carinata HOM05D000540 ORTHO05D008105 1.8e-23 112.5 77 72.7
A01p31250 Brassica napus HOM05D000540 ORTHO05D008105 1.8e-23 112.5 77 72.7
A07p08550 Brassica napus HOM05D000540 ORTHO05D008105 1.8e-23 112.5 77 72.7
C07p13360 Brassica napus HOM05D000540 ORTHO05D008105 1.8e-23 112.5 77 72.7
BolC1t03932H Brassica oleracea HOM05D000540 ORTHO05D008105 1.8e-23 112.5 77 72.7
BolC7t41830H Brassica oleracea HOM05D000540 ORTHO05D008105 1.8e-23 112.5 77 72.7
BraA01t03249Z Brassica rapa HOM05D000540 ORTHO05D008105 1.8e-23 112.5 77 72.7
BraA03t13476Z Brassica rapa HOM05D000540 ORTHO05D008105 1.8e-23 112.5 77 72.7
BraA07t28644Z Brassica rapa HOM05D000540 ORTHO05D008105 1.8e-23 112.5 77 72.7
Phvul.001G167500 Phaseolus vulgaris HOM05D000540 ORTHO05D008105 1.8e-23 112.5 87 62.1
TPR.G34443 Trifolium pratense HOM05D000540 ORTHO05D008105 1.8e-23 112.5 93 61.3
AL8G10730 Arabidopsis lyrata HOM05D000540 ORTHO05D008105 2.4e-23 112.1 77 72.7
Ca_09077_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 2.4e-23 112.1 87 63.2
Ca_22805_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 2.4e-23 112.1 87 63.2
A03p43380 Brassica napus HOM05D000540 ORTHO05D008105 3.1e-23 111.7 74 74.3
Thhalv10002665m.g Eutrema salsugineum HOM05D000540 ORTHO05D008105 3.1e-23 111.7 74 74.3
Glyma.08G106800 Glycine max HOM05D000540 ORTHO05D008105 3.1e-23 111.7 88 62.5
Sp3g21530 Schrenkiella parvula HOM05D000540 ORTHO05D008105 3.1e-23 111.7 74 74.3
TPR.G25660 Trifolium pratense HOM05D000540 ORTHO05D008105 3.1e-23 111.7 87 63.2
Carub.0008s0045 Capsella rubella HOM05D000540 ORTHO05D008105 4.1e-23 111.3 77 71.4
Medtr5g085270 Medicago truncatula HOM05D000540 ORTHO05D008105 4.1e-23 111.3 87 63.2
Lalb_Chr10g0097221 Lupinus albus HOM05D000540 ORTHO05D008105 5.3e-23 110.9 86 62.8
C01p39820 Brassica napus HOM05D000540 ORTHO05D008105 9.1e-23 110.2 77 71.4
arahy.Tifrunner.gnm1.ann1.3CPC1Y Arachis hypogaea HOM05D000540 ORTHO05D008105 1.2e-22 109.8 90 64.4
arahy.Tifrunner.gnm1.ann1.WZXK6X Arachis hypogaea HOM05D000540 ORTHO05D008105 1.2e-22 109.8 90 64.4
BcaC01g03363 Brassica carinata HOM05D000540 ORTHO05D008105 1.2e-22 109.8 74 73.0
BolC3t17591H Brassica oleracea HOM05D000540 ORTHO05D008105 1.2e-22 109.8 74 73.0
VMungo1383G2423 Vigna mungo HOM05D001610 ORTHO05D001585 1.6e-22 109.4 87 60.9
Glyma.05G150000 Glycine max HOM05D000540 ORTHO05D008105 3.5e-22 108.2 87 59.8
C03p53300 Brassica napus HOM05D000540 ORTHO05D008105 1.7e-21 105.9 74 70.3
Sp7g05780 Schrenkiella parvula HOM05D000540 ORTHO05D008105 3.8e-21 104.8 77 70.1
Aa31LG8G10410 Aethionema arabicum HOM05D000540 ORTHO05D008105 6.5e-21 104.0 74 66.2
Sabra13G0107600 Salix brachista HOM05D000540 ORTHO05D008105 9.4e-20 100.1 70 64.3
Potri.013G129600 Populus trichocarpa HOM05D000540 ORTHO05D008105 2.7e-19 98.6 70 61.4
SGA_v2.0_scaffold507G52537 Striga asiatica HOM05D000540 ORTHO05D000681 4.0e-18 94.7 65 69.2
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 6.8e-18 94.0 64 68.8
ClCG00G000520 Citrullus lanatus HOM05D000540 ORTHO05D008105 1.2e-17 93.2 83 55.4
Medtr8g466190 Medicago truncatula HOM05D000540 ORTHO05D008105 1.2e-17 93.2 66 66.7
Solyc12g035810.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 1.5e-17 92.8 95 52.6
ClCG00G000530 Citrullus lanatus HOM05D000540 ORTHO05D008105 7.5e-17 90.5 79 59.5
Mapoly0157s0025 Marchantia polymorpha HOM05D000540 ORTHO05D008105 7.5e-17 90.5 86 54.7
GSVIVG01027360001 Vitis vinifera HOM05D000540 ORTHO05D008105 9.8e-17 90.1 66 60.6
Solyc05g045760.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 1.3e-16 89.7 77 58.4
Solyc05g045820.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 2.2e-16 89.0 66 63.6
Nitab4.5_0000334g0010 Nicotiana tabacum HOM05D000540 ORTHO05D008105 8.3e-16 87.0 65 63.1
AagrBONN_evm.TU.Sc2ySwM_117.3450 Anthoceros agrestis HOM05D000540 ORTHO05D008105 1.4e-15 86.3 74 58.1
AagrBONN_evm.TU.Sc2ySwM_228.180 Anthoceros agrestis HOM05D000540 ORTHO05D008105 1.4e-15 86.3 74 58.1
SHI38387 Sapria himalayana HOM05D000540 ORTHO05D000681 1.2e-14 83.2 54 68.5
SHI38983 Sapria himalayana HOM05D000540 ORTHO05D008105 2.7e-14 82.0 62 59.7
SHI36701 Sapria himalayana HOM05D000540 ORTHO05D008105 3.5e-14 81.6 59 62.7
SHI50600 Sapria himalayana HOM05D000540 ORTHO05D000681 3.5e-14 81.6 63 60.3
SHI31828 Sapria himalayana HOM05D000540 ORTHO05D000681 4.5e-14 81.3 63 58.7
SHI34991 Sapria himalayana HOM05D000540 ORTHO05D000681 4.5e-14 81.3 63 58.7
SHI35858 Sapria himalayana HOM05D000540 ORTHO05D008105 4.5e-14 81.3 63 58.7
SHI37858 Sapria himalayana HOM05D000540 ORTHO05D000681 4.5e-14 81.3 63 58.7
SHI37906 Sapria himalayana HOM05D000540 ORTHO05D000681 4.5e-14 81.3 63 58.7
SHI37965 Sapria himalayana HOM05D000540 ORTHO05D000681 4.5e-14 81.3 63 58.7
SHI38052 Sapria himalayana HOM05D000540 ORTHO05D000681 4.5e-14 81.3 63 58.7
SHI38194 Sapria himalayana HOM05D000540 ORTHO05D000681 4.5e-14 81.3 63 58.7
SHI38471 Sapria himalayana HOM05D000540 ORTHO05D000681 4.5e-14 81.3 63 58.7
SHI38513 Sapria himalayana HOM05D000540 ORTHO05D000681 4.5e-14 81.3 63 58.7
SHI38589 Sapria himalayana HOM05D000540 ORTHO05D000681 4.5e-14 81.3 63 58.7
SHI38605 Sapria himalayana HOM05D000540 ORTHO05D000681 4.5e-14 81.3 63 58.7
SHI38868 Sapria himalayana HOM05D000540 ORTHO05D000681 4.5e-14 81.3 63 58.7
SHI40568 Sapria himalayana HOM05D000540 ORTHO05D000681 4.5e-14 81.3 63 58.7
SHI41069 Sapria himalayana HOM05D000540 ORTHO05D000681 4.5e-14 81.3 63 58.7
SHI43265 Sapria himalayana HOM05D000540 ORTHO05D000681 4.5e-14 81.3 63 58.7
SHI43312 Sapria himalayana HOM05D000540 ORTHO05D000681 4.5e-14 81.3 63 58.7
SHI45733 Sapria himalayana HOM05D000540 ORTHO05D000681 4.5e-14 81.3 63 58.7
SHI50522 Sapria himalayana HOM05D000540 ORTHO05D000681 4.5e-14 81.3 63 58.7
SHI53542 Sapria himalayana HOM05D000540 ORTHO05D000681 4.5e-14 81.3 63 58.7
SMO358G0711 Selaginella moellendorffii HOM05D000540 ORTHO05D008105 4.5e-14 81.3 91 48.4
SHI51026 Sapria himalayana HOM05D000540 ORTHO05D000681 7.7e-14 80.5 63 57.1
SHI54850 Sapria himalayana HOM05D000540 ORTHO05D008105 7.7e-14 80.5 62 58.1
SHI51272 Sapria himalayana HOM05D000540 ORTHO05D000681 1.0e-13 80.1 63 57.1
Zm00001eb293400 Zea mays HOM05D042568 ORTHO05D008105 1.3e-13 79.7 56 64.3
Haze_26884 Corylus avellana HOM05D000540 ORTHO05D000681 2.3e-13 79.0 76 51.3
SHI27340 Sapria himalayana HOM05D000540 ORTHO05D000681 2.3e-13 79.0 63 58.7
SHI54942 Sapria himalayana HOM05D000540 ORTHO05D008105 2.9e-13 78.6 63 57.1
SHI37554 Sapria himalayana HOM05D000540 ORTHO05D008105 3.8e-13 78.2 62 56.5
SHI40340 Sapria himalayana HOM05D000540 ORTHO05D000681 8.6e-13 77.0 63 55.6
SHI49875 Sapria himalayana HOM05D000540 ORTHO05D000681 1.5e-12 76.3 63 54.0
SHI53038 Sapria himalayana HOM05D000540 ORTHO05D000681 1.5e-12 76.3 63 54.0
ClCG11G008150 Citrullus lanatus HOM05D000540 ORTHO05D008105 1.6e-11 72.8 51 62.7
SHI44879 Sapria himalayana HOM05D000540 ORTHO05D008105 1.6e-11 72.8 51 62.7
SHI37876 Sapria himalayana HOM05D000540 ORTHO05D000681 2.1e-11 72.4 63 55.6
SHI38050 Sapria himalayana HOM05D000540 ORTHO05D000681 2.1e-11 72.4 63 55.6
SHI37326 Sapria himalayana HOM05D000540 ORTHO05D000681 3.6e-11 71.6 63 52.4
BcaB03g14613 Brassica carinata HOM05D000142 ORTHO05D000124 6.1e-11 70.9 76 51.3
SHI37000 Sapria himalayana HOM05D000540 ORTHO05D000681 6.1e-11 70.9 63 49.2
Pp3c3_35760 Physcomitrium patens HOM05D024141 ORTHO05D008105 1.0e-10 70.1 59 57.6
ClCG03G011250 Citrullus lanatus HOM05D000540 ORTHO05D000001 2.3e-10 68.9 46 67.4
Potri.019G101950 Populus trichocarpa HOM05D000540 ORTHO05D008105 2.3e-10 68.9 42 73.8
SHI35194 Sapria himalayana HOM05D000540 ORTHO05D000681 3.0e-10 68.6 59 57.6
SHI41065 Sapria himalayana HOM05D000540 ORTHO05D000681 2.6e-09 65.5 46 63.0
SHI48062 Sapria himalayana HOM05D000540 ORTHO05D000681 4.4e-09 64.7 46 63.0
Oeu011524.2 Olea europaea HOM05D000218 ORTHO05D000125 2.8e-08 62.0 91 40.7
Mapoly0010s0113 Marchantia polymorpha HOM05D024141 ORTHO05D008105 3.7e-08 61.6 54 55.6
ECA236G4531 Erigeron canadensis HOM05D000540 ORTHO05D009557 4.9e-08 61.2 63 47.6
HanXRQChr11g0337241 Helianthus annuus HOM05D000540 ORTHO05D009557 6.3e-08 60.8 65 46.2
HanXRQChr15g0494391 Helianthus annuus HOM05D000540 ORTHO05D009557 6.3e-08 60.8 65 46.2
Lsat_1_v5_gn_7_110000 Lactuca sativa HOM05D000540 ORTHO05D009557 8.3e-08 60.5 64 45.3
Oeu025653.1 Olea europaea HOM05D000218 ORTHO05D000125 1.1e-07 60.1 79 41.8
Lsat_1_v5_gn_5_185760 Lactuca sativa HOM05D000540 ORTHO05D009557 1.4e-07 59.7 63 46.0
DCAR_032526 Daucus carota HOM05D000540 ORTHO05D009557 2.4e-07 58.9 75 40.0
Hma1.2p1_0192F.1_g083730 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 3.1e-07 58.5 75 40.0
Hma1.2p1_0247F.1_g101832 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 3.1e-07 58.5 75 40.0
Hma1.2p1_0298F.1_g117734 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 3.1e-07 58.5 75 40.0
Hma1.2p1_0818F.1_g223303 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 3.1e-07 58.5 75 40.0
SHI34608 Sapria himalayana HOM05D000540 ORTHO05D000681 3.1e-07 58.5 42 64.3
SHI40214 Sapria himalayana HOM05D000540 ORTHO05D000681 3.1e-07 58.5 50 56.0
unitig_699.g19584 Utricularia gibba HOM05D000218 ORTHO05D000125 3.1e-07 58.5 93 38.7
Gohir.A12G089750 Gossypium hirsutum HOM05D000540 ORTHO05D009557 4.1e-07 58.2 75 40.0
HanXRQChr10g0318011 Helianthus annuus HOM05D000540 ORTHO05D009557 4.1e-07 58.2 75 41.3
Lsat_1_v5_gn_0_41560 Lactuca sativa HOM05D000540 ORTHO05D000681 5.4e-07 57.8 75 41.3
Potri.005G154674 Populus trichocarpa HOM05D000540 ORTHO05D009557 9.2e-07 57.0 75 42.7
Hund07704 Selenicereus undatus HOM05D000540 ORTHO05D008105 9.2e-07 57.0 31 80.6
Potri.011G074301 Populus trichocarpa HOM05D000540 ORTHO05D009557 1.2e-06 56.6 90 37.8
PGR111G0101 Punica granatum HOM05D000540 ORTHO05D009557 1.2e-06 56.6 90 35.6
Cre08.g375250 Chlamydomonas reinhardtii HOM05D000540 ORTHO05D009557 1.6e-06 56.2 90 34.4
Gohir.D06G105033 Gossypium hirsutum HOM05D000540 ORTHO05D009557 1.6e-06 56.2 71 40.8
Nitab4.5_0000351g0280 Nicotiana tabacum HOM05D000540 ORTHO05D008105 1.6e-06 56.2 45 57.8
Potri.013G137688 Populus trichocarpa HOM05D000540 ORTHO05D009557 1.6e-06 56.2 90 37.8
SHI38319 Sapria himalayana HOM05D000540 ORTHO05D000681 2.0e-06 55.8 44 56.8
arahy.Tifrunner.gnm1.ann1.YHR3P6 Arachis hypogaea HOM05D000540 ORTHO05D009557 3.5e-06 55.1 86 34.9
CARHR114570 Cardamine hirsuta HOM05D000540 ORTHO05D009557 3.5e-06 55.1 75 38.7
MBI05_g05349_MAGBIO Magnolia biondii HOM05D016544 ORTHO05D017245 3.5e-06 55.1 34 70.6
Lalb_Chr25g0283401 Lupinus albus HOM05D000540 ORTHO05D009557 4.5e-06 54.7 90 33.3
CAN.G993.9 Capsicum annuum HOM05D003467 ORTHO05D008105 5.9e-06 54.3 70 42.9
PSO548G0068 Papaver somniferum HOM05D000540 ORTHO05D009557 5.9e-06 54.3 86 38.4
MSTRG.19148 Avicennia marina HOM05D000218 ORTHO05D000125 7.8e-06 53.9 92 37.0
PSO541G1563 Papaver somniferum HOM05D000540 ORTHO05D009557 7.8e-06 53.9 62 43.5
PSO675G4368 Papaver somniferum HOM05D000540 ORTHO05D009557 7.8e-06 53.9 62 43.5
SGA_v2.0_scaffold126G33916 Striga asiatica HOM05D000218 ORTHO05D000125 7.8e-06 53.9 76 36.8


User provided reference genes

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