Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 6.4e-266 920.2 480 100.0
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 1.8e-204 716.1 479 80.6
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 3.7e-173 612.1 480 71.2
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 2.9e-141 506.1 301 88.7
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 4.5e-102 375.9 443 52.4
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 3.2e-100 369.8 443 51.2
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 6.7e-98 362.1 450 50.2
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 5.7e-97 359.0 476 47.9
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 9.7e-97 358.2 466 48.1
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 2.8e-96 356.7 466 48.1
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 2.8e-96 356.7 446 50.9
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 4.8e-96 355.9 459 49.9
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 1.4e-95 354.4 466 48.1
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 2.2e-93 347.1 478 47.7
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 4.2e-92 342.8 455 51.0
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 6.1e-91 339.0 478 47.1
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 5.2e-90 335.9 479 47.8
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 1.1e-89 334.7 486 47.5
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 4.4e-89 332.8 447 50.6
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 5.7e-89 332.4 437 49.7
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 2.4e-87 327.0 438 49.5
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 3.5e-86 323.2 454 48.2
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 5.0e-85 319.3 483 45.5
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 8.5e-85 318.5 449 48.3
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 8.5e-85 318.5 450 48.9
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 1.9e-84 317.4 450 50.2
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 4.2e-84 316.2 447 46.8
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 4.7e-83 312.8 459 46.8
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 4.7e-83 312.8 459 50.1
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 8.8e-82 308.5 442 47.3
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 2.0e-81 307.4 443 46.7
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 2.0e-81 307.4 447 46.1
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 5.7e-81 305.8 443 47.6
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 7.5e-81 305.4 472 44.5
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 9.8e-81 305.1 445 45.6
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 9.8e-81 305.1 447 46.1
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 3.1e-79 300.1 442 45.7
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 4.1e-79 299.7 394 48.0
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 9.1e-79 298.5 447 48.1
FvH4_2g30050 Fragaria vesca HOM05D005141 ORTHO05D006250 9.1e-79 298.5 339 52.2
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 9.1e-79 298.5 448 45.8
Potri.006G247500 Populus trichocarpa HOM05D005141 ORTHO05D006250 1.2e-78 298.1 312 56.4
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 7.7e-78 295.4 456 47.8
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 2.9e-77 293.5 422 46.9
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 3.8e-77 293.1 431 45.2
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 1.5e-76 291.2 475 41.7
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 4.2e-76 289.7 444 44.6
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 9.4e-76 288.5 510 44.9
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 3.0e-74 283.5 465 44.1
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 5.2e-74 282.7 421 44.9
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 1.2e-73 281.6 479 42.6
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 4.4e-73 279.6 455 45.7
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 1.3e-72 278.1 483 44.9
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 1.7e-69 267.7 455 45.3
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 2.5e-68 263.8 389 48.1
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 4.3e-68 263.1 450 43.1
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 2.1e-67 260.8 451 42.1
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 3.6e-67 260.0 451 43.2
Cpa.g.sc91.20 Carica papaya HOM05D005141 ORTHO05D006250 8.0e-67 258.8 325 49.2
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 8.9e-66 255.4 387 45.0
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 3.4e-65 253.4 467 40.3
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 2.4e-63 247.3 455 40.9
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 3.2e-63 246.9 389 42.7
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 2.0e-62 244.2 407 43.0
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 3.5e-62 243.4 407 42.8
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 5.9e-62 242.7 407 42.8
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 1.7e-61 241.1 484 40.3
Nn8g39307 Nelumbo nucifera HOM05D005141 ORTHO05D006250 3.9e-61 240.0 312 46.2
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 3.3e-60 236.9 321 49.5
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 5.6e-60 236.1 477 39.6
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 5.6e-60 236.1 467 40.5
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 6.2e-59 232.6 481 40.1
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 6.2e-59 232.6 333 44.7
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 8.0e-59 232.3 448 41.5
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 8.0e-59 232.3 463 39.3
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 1.4e-58 231.5 490 37.8
Psat0s1782g0240 Pisum sativum HOM05D005141 ORTHO05D006250 5.2e-58 229.6 279 51.3
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 2.0e-57 227.6 473 40.4
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 7.5e-57 225.7 412 40.3
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 1.7e-56 224.6 473 40.0
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 4.9e-56 223.0 330 44.5
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 1.4e-55 221.5 435 38.2
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 1.2e-54 218.4 384 41.4
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 3.3e-52 210.3 325 45.8
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 1.6e-51 208.0 364 42.0
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 4.7e-51 206.5 413 39.5
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 1.8e-50 204.5 296 48.3
Oeu014659.3 Olea europaea HOM05D005141 ORTHO05D006250 2.0e-49 201.1 337 43.0
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 4.4e-49 199.9 436 37.2
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 4.4e-49 199.9 414 36.0
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 1.9e-47 194.5 463 35.6
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 4.1e-47 193.4 384 41.7
MBI01_g37337_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 7.1e-47 192.6 311 41.2
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 2.1e-46 191.0 392 38.0
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 7.8e-46 189.1 328 43.3
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 3.3e-44 183.7 375 37.6
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 9.5e-44 182.2 431 39.4
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 3.0e-37 160.6 449 32.1
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 1.2e-35 155.2 444 34.9
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 2.1e-35 154.5 445 31.7
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 5.2e-34 149.8 397 32.5
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 7.6e-33 146.0 385 34.3
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 1.1e-31 142.1 453 30.9
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 1.9e-31 141.4 449 31.0
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 5.4e-31 139.8 455 31.9
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 1.6e-30 138.3 451 30.4
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 2.7e-30 137.5 446 30.7
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 4.6e-30 136.7 452 30.8
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 4.6e-30 136.7 452 30.8
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 7.8e-30 136.0 456 30.5
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 7.8e-30 136.0 309 34.6
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 8.7e-29 132.5 452 30.1
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 8.1e-27 125.9 394 31.2
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 1.4e-26 125.2 409 31.5
Glyma.17G205200 Glycine max HOM05D005141 ORTHO05D006250 1.4e-26 125.2 199 44.7
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 5.3e-26 123.2 461 30.2
Aqoxy7G01897 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 1.2e-25 122.1 275 40.4
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 2.0e-25 121.3 389 30.3
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 7.6e-25 119.4 480 29.6
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 4.2e-23 113.6 387 30.7
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 1.1e-18 99.0 280 32.5
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 1.4e-18 98.6 310 30.3
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 3.1e-18 97.4 303 29.4
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 1.2e-17 95.5 295 34.9
Ah.10g025860 Amaranthus hybridus HOM05D005141 ORTHO05D006250 2.0e-17 94.7 214 34.1
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 9.3e-15 85.9 187 39.0
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 2.1e-14 84.7 153 41.2
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 1.3e-13 82.0 169 36.1
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 1.5e-12 78.6 294 30.6
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 1.5e-12 78.6 186 33.3
BcaC08g44885 Brassica carinata HOM05D005141 ORTHO05D006250 9.6e-12 75.9 180 30.6
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 2.8e-11 74.3 196 32.1
Cpa.g.sc91.24 Carica papaya HOM05D005141 ORTHO05D006250 3.1e-10 70.9 105 47.6
C06p25010 Brassica napus HOM05D000698 ORTHO05D006250 4.0e-10 70.5 196 29.1
Haze_10527 Corylus avellana HOM05D005141 ORTHO05D006250 4.0e-10 70.5 101 40.6
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 9.0e-10 69.3 156 35.9
A06p26660 Brassica napus HOM05D005141 ORTHO05D006250 5.8e-09 66.6 184 29.9


User provided reference genes

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