Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 4.0e-151 538.1 278 100.0
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 1.7e-122 443.0 248 93.1
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 1.9e-116 422.9 251 88.8
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 2.6e-110 402.5 255 83.1
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 3.3e-81 305.8 260 65.0
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 3.3e-81 305.8 253 64.4
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 2.8e-80 302.8 263 62.0
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 4.8e-80 302.0 250 64.4
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 6.2e-80 301.6 249 64.7
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 1.8e-79 300.1 250 63.6
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 2.4e-79 299.7 254 63.0
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 2.4e-79 299.7 240 65.4
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 4.0e-79 298.9 260 60.0
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 1.2e-78 297.4 242 65.7
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 2.9e-77 292.7 251 61.0
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 3.8e-77 292.4 255 62.7
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 6.5e-77 291.6 254 63.4
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 1.4e-76 290.4 239 59.8
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 1.9e-76 290.0 253 59.3
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.9e-76 290.0 277 58.8
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 1.9e-76 290.0 254 61.8
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 2.5e-76 289.7 253 64.4
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 3.2e-76 289.3 247 61.9
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 3.2e-76 289.3 238 64.3
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 7.1e-76 288.1 258 58.5
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 7.1e-76 288.1 233 62.7
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 1.2e-75 287.3 255 59.6
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 1.2e-75 287.3 249 60.6
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 1.6e-75 287.0 246 60.6
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 2.1e-75 286.6 248 59.7
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 4.6e-75 285.4 272 58.5
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 4.6e-75 285.4 275 57.8
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 4.6e-75 285.4 244 61.5
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 4.6e-75 285.4 244 61.5
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 4.6e-75 285.4 275 58.9
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 6.0e-75 285.0 235 64.3
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 1.8e-74 283.5 248 60.1
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 1.8e-74 283.5 233 66.1
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 1.8e-74 283.5 250 64.4
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 1.8e-74 283.5 248 60.1
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 2.3e-74 283.1 244 60.2
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 3.0e-74 282.7 236 61.4
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 3.9e-74 282.3 249 59.0
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 5.1e-74 282.0 265 58.9
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 8.7e-74 281.2 262 59.2
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 2.5e-73 279.6 260 57.7
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 3.3e-73 279.3 289 55.0
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 4.3e-73 278.9 227 64.3
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 1.6e-72 276.9 246 58.5
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 2.8e-72 276.2 299 51.8
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 1.1e-71 274.2 263 59.3
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 1.4e-71 273.9 248 58.1
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 1.8e-71 273.5 245 59.6
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 1.8e-71 273.5 266 58.3
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 2.4e-71 273.1 272 54.4
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 6.9e-71 271.6 243 58.0
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 6.9e-71 271.6 239 59.0
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 9.0e-71 271.2 248 58.1
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 1.5e-70 270.4 262 54.2
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 7.7e-70 268.1 238 61.3
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 7.7e-70 268.1 288 51.4
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 2.9e-69 266.2 241 57.7
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 3.8e-69 265.8 253 58.1
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 5.0e-69 265.4 255 57.6
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 1.9e-68 263.5 220 62.7
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 2.5e-68 263.1 247 58.3
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 1.6e-67 260.4 238 60.1
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 1.4e-66 257.3 268 53.0
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 6.7e-66 255.0 296 50.3
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 5.7e-65 251.9 245 58.0
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 2.6e-62 243.0 246 51.6
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 3.4e-62 242.7 259 54.8
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 7.7e-62 241.5 263 52.9
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 2.2e-61 240.0 216 60.6
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 2.2e-61 240.0 236 57.6
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 6.5e-61 238.4 228 61.0
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 1.9e-60 236.9 249 50.2
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 2.7e-59 233.0 271 48.7
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 1.0e-58 231.1 392 39.5
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 3.9e-58 229.2 254 52.8
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 2.0e-57 226.9 225 53.3
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 3.3e-57 226.1 265 53.6
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 9.7e-57 224.6 247 52.6
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 6.3e-56 221.9 244 50.0
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 2.4e-55 219.9 252 52.8
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 4.5e-54 215.7 267 50.2
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 4.5e-54 215.7 267 50.2
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 5.5e-52 208.8 218 54.6
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 9.4e-52 208.0 208 52.9
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 2.1e-51 206.8 203 55.7
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 8.8e-50 201.4 247 47.8
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 1.8e-47 193.7 205 55.1
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 1.9e-44 183.7 159 58.5
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 3.6e-43 179.5 166 57.2
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 3.0e-42 176.4 153 60.1
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 3.0e-42 176.4 161 57.8
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 4.8e-40 169.1 159 54.7
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 6.3e-40 168.7 184 53.8
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 1.8e-39 167.2 158 57.0
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 9.1e-39 164.9 262 39.3
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 7.7e-38 161.8 128 61.7
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 3.8e-37 159.5 260 41.9
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 3.8e-37 159.5 123 61.8
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 1.9e-36 157.1 211 43.1
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 6.1e-35 152.1 151 58.9
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 1.2e-33 147.9 104 67.3
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 4.4e-33 146.0 138 58.0
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 4.8e-32 142.5 145 57.2
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 6.3e-32 142.1 145 53.1
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 6.3e-32 142.1 145 53.1
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 9.1e-31 138.3 145 52.4
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 9.1e-31 138.3 145 52.4
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 1.9e-28 130.6 108 57.4
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 8.0e-27 125.2 128 55.5
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 1.2e-25 121.3 144 47.2
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 1.5e-25 120.9 282 34.4
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 8.3e-24 115.2 246 32.9
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 5.9e-22 109.0 110 54.5
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.0e-21 108.2 72 70.8
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 1.1e-20 104.8 314 26.4
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 1.1e-20 104.8 83 65.1
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 2.8e-19 100.1 95 54.7
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 6.8e-18 95.5 94 55.3
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 8.9e-18 95.1 111 47.7
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 2.9e-16 90.1 110 47.3
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 6.4e-16 89.0 56 73.2
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 1.4e-15 87.8 119 44.5
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 1.6e-14 84.3 62 67.7
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 2.3e-13 80.5 56 62.5
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 1.9e-12 77.4 56 64.3
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 8.0e-11 72.0 64 51.6
SHI14999 Sapria himalayana HOM05D005377 ORTHO05D003034 2.9e-08 63.5 45 62.2


User provided reference genes

Program Settings