Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011201.2 Cucumis melo HOM05D006422 ORTHO05D007992 6.7e-105 384.0 196 100.0
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 1.7e-87 326.2 182 91.2
MD15G1109900 Malus domestica HOM05D006422 ORTHO05D007992 2.8e-58 229.2 183 66.7
Cfa013253 Carpinus fangiana HOM05D006422 ORTHO05D007992 8.1e-58 227.6 182 68.1
CiPaw.07G214400 Carya illinoinensis HOM05D006422 ORTHO05D007992 2.4e-57 226.1 177 67.8
Prupe.1G462100 Prunus persica HOM05D006422 ORTHO05D007992 1.2e-56 223.8 183 65.6
FvH4_2g30680 Fragaria vesca HOM05D006422 ORTHO05D007992 2.6e-56 222.6 183 63.9
FAN20G1184 Fragaria x ananassa HOM05D006422 ORTHO05D007992 2.6e-56 222.6 183 62.8
QL12p024696 Quercus lobata HOM05D006422 ORTHO05D007992 2.6e-56 222.6 189 64.6
Lj5g0012981 Lotus japonicus HOM05D006422 ORTHO05D007992 3.4e-56 222.2 165 67.9
CANSAT25G0758 Cannabis sativa HOM05D006422 ORTHO05D007992 5.8e-56 221.5 182 66.5
FAN24G2382 Fragaria x ananassa HOM05D006422 ORTHO05D007992 7.6e-56 221.1 183 63.9
Ciclev10009324m.g Citrus clementina HOM05D006422 ORTHO05D007992 9.9e-56 220.7 167 70.7
RcHm_v2.0_Chr6g0312201 Rosa chinensis HOM05D006422 ORTHO05D007992 2.2e-55 219.5 183 63.4
GSVIVG01035544001 Vitis vinifera HOM05D006422 ORTHO05D007992 2.9e-55 219.2 165 68.5
Atru.chr7.2615_Atru.chr7.2616 Acer truncatum HOM05D006422 ORTHO05D007992 4.2e-54 215.3 159 70.4
FAN27G3442 Fragaria x ananassa HOM05D006422 ORTHO05D007992 4.2e-54 215.3 191 60.2
FAN15G3645 Fragaria x ananassa HOM05D006422 ORTHO05D007992 2.7e-53 212.6 183 61.2
Phvul.001G058000 Phaseolus vulgaris HOM05D006422 ORTHO05D007992 3.5e-53 212.2 162 67.9
Lalb_Chr14g0362181 Lupinus albus HOM05D006422 ORTHO05D007992 4.6e-53 211.8 157 67.5
TAR383G0184 Trochodendron aralioides HOM05D006422 ORTHO05D007992 4.6e-53 211.8 158 69.0
Medtr1g009980 Medicago truncatula HOM05D006422 ORTHO05D007992 6.0e-53 211.5 180 61.7
PSO170G4757 Papaver somniferum HOM05D006422 ORTHO05D007992 7.8e-53 211.1 157 67.5
VMungo0647G2190 Vigna mungo HOM05D006422 ORTHO05D007992 7.8e-53 211.1 135 75.6
Nn1g01726 Nelumbo nucifera HOM05D006422 ORTHO05D007992 3.0e-52 209.1 180 66.1
Sabra06G0214100 Salix brachista HOM05D006422 ORTHO05D007992 3.0e-52 209.1 182 64.3
Ca_12880_v3 Cicer arietinum L. HOM05D006422 ORTHO05D007992 5.1e-52 208.4 183 61.2
PSO017G3510 Papaver somniferum HOM05D006422 ORTHO05D007992 5.1e-52 208.4 157 66.9
BcaB01g04848 Brassica carinata HOM05D006422 ORTHO05D007992 1.1e-51 207.2 172 58.7
Glyma.17G201600 Glycine max HOM05D006422 ORTHO05D007992 1.1e-51 207.2 129 76.7
Aqoxy5G03915 Aquilegia oxysepala HOM05D006422 ORTHO05D007992 1.5e-51 206.8 190 60.0
BcaB01g04822 Brassica carinata HOM05D006422 ORTHO05D007992 1.5e-51 206.8 177 58.2
C03p11290 Brassica napus HOM05D006422 ORTHO05D007992 1.5e-51 206.8 177 58.2
Potri.006G276400 Populus trichocarpa HOM05D006422 ORTHO05D007992 1.5e-51 206.8 184 64.7
TPR.G11997 Trifolium pratense HOM05D006422 ORTHO05D007992 3.3e-51 205.7 183 59.6
Psat6g032000 Pisum sativum HOM05D006422 ORTHO05D007992 5.6e-51 204.9 182 62.1
BolC3t13599H Brassica oleracea HOM05D006422 ORTHO05D007992 9.6e-51 204.1 177 57.6
THA.LOC104811048 Tarenaya hassleriana HOM05D006422 ORTHO05D007992 1.6e-50 203.4 184 60.3
BcaC04g19400 Brassica carinata HOM05D006422 ORTHO05D007992 2.1e-50 203.0 180 58.3
C09p56110 Brassica napus HOM05D006422 ORTHO05D007992 2.1e-50 203.0 180 58.3
BolC9t58478H Brassica oleracea HOM05D006422 ORTHO05D007992 2.1e-50 203.0 180 58.3
Thhalv10014537m.g Eutrema salsugineum HOM05D006422 ORTHO05D007992 2.1e-50 203.0 190 57.4
BcaB08g36552 Brassica carinata HOM05D006422 ORTHO05D007992 3.6e-50 202.2 179 57.0
A03p09710 Brassica napus HOM05D006422 ORTHO05D007992 3.6e-50 202.2 177 57.6
BraA03t10287Z Brassica rapa HOM05D006422 ORTHO05D007992 3.6e-50 202.2 177 57.6
Cc04_g09430 Coffea canephora HOM05D006422 ORTHO05D007992 4.7e-50 201.8 172 62.2
AUR62020627 Chenopodium quinoa HOM05D006422 ORTHO05D007992 6.2e-50 201.4 186 59.7
Dinv10868 Davidia involucrata HOM05D006422 ORTHO05D007992 6.2e-50 201.4 187 61.5
Dinv26550 Davidia involucrata HOM05D006422 ORTHO05D007992 6.2e-50 201.4 187 61.5
Thecc.09G005200 Theobroma cacao HOM05D006422 ORTHO05D007992 6.2e-50 201.4 149 67.1
Aa31LG9G9500 Aethionema arabicum HOM05D006422 ORTHO05D007992 8.1e-50 201.1 172 61.0
A10p19790 Brassica napus HOM05D006422 ORTHO05D007992 8.1e-50 201.1 177 56.5
BraA10t44055Z Brassica rapa HOM05D006422 ORTHO05D007992 8.1e-50 201.1 177 56.5
Sp6g24440 Schrenkiella parvula HOM05D006422 ORTHO05D007992 8.1e-50 201.1 183 56.8
arahy.Tifrunner.gnm1.ann1.43EIBT Arachis hypogaea HOM05D006422 ORTHO05D007992 1.8e-49 199.9 173 60.1
PGR042G1463 Punica granatum HOM05D006422 ORTHO05D007992 1.8e-49 199.9 135 71.9
arahy.Tifrunner.gnm1.ann1.D9GJPD Arachis hypogaea HOM05D006422 ORTHO05D007992 3.1e-49 199.1 173 60.1
CARHR192910 Cardamine hirsuta HOM05D006422 ORTHO05D007992 3.1e-49 199.1 187 56.1
Eucgr.C02103 Eucalyptus grandis HOM05D006422 ORTHO05D007992 4.0e-49 198.7 137 73.7
Manes.16G136400 Manihot esculenta HOM05D006422 ORTHO05D007992 4.0e-49 198.7 179 59.8
Duzib168G1765 Durio zibethinus HOM05D006422 ORTHO05D007992 5.3e-49 198.4 148 66.9
Carub.0006s1831 Capsella rubella HOM05D006422 ORTHO05D007992 6.9e-49 198.0 190 55.3
COL.COLO4_18610 Corchorus olitorius HOM05D006422 ORTHO05D007992 2.0e-48 196.4 148 68.9
Hma1.2p1_0534F.1_g173720 Hydrangea macrophylla HOM05D006422 ORTHO05D007992 2.0e-48 196.4 155 65.8
CAN.G1364.3 Capsicum annuum HOM05D006422 ORTHO05D007992 2.6e-48 196.1 137 73.7
EL10Ac2g03719 Beta vulgaris HOM05D006422 ORTHO05D007992 3.4e-48 195.7 186 60.2
AL6G31470 Arabidopsis lyrata HOM05D006422 ORTHO05D007992 4.4e-48 195.3 185 56.8
Solyc08g006160.4 Solanum lycopersicum HOM05D006422 ORTHO05D007992 4.4e-48 195.3 164 64.0
CDE04G2326 Ceratophyllum demersum HOM05D006422 ORTHO05D007992 5.8e-48 194.9 160 65.0
Hma1.2p1_0534F.1_g173730 Hydrangea macrophylla HOM05D006422 ORTHO05D007992 7.6e-48 194.5 154 65.6
Sc09g0007930 Simmondsia chinensis HOM05D006422 ORTHO05D007992 7.6e-48 194.5 187 56.7
PGSC0003DMG400009533 Solanum tuberosum HOM05D006422 ORTHO05D007992 7.6e-48 194.5 137 72.3
HPP92_004705 Vanilla planifolia HOM05D006422 ORTHO05D007992 7.6e-48 194.5 140 66.4
Sopen08g002130 Solanum pennellii HOM05D006422 ORTHO05D007992 9.9e-48 194.1 160 66.2
AT5G19940 Arabidopsis thaliana HOM05D006422 ORTHO05D007992 1.7e-47 193.4 185 55.7
TWI34G0909 Tripterygium wilfordii HOM05D006422 ORTHO05D007992 2.2e-47 193.0 160 63.1
Migut.A00443 Erythranthe guttata HOM05D006422 ORTHO05D007992 4.2e-46 188.7 143 65.0
CiPaw.08G017800 Carya illinoinensis HOM05D006422 ORTHO05D007992 1.6e-45 186.8 178 60.7
Actinidia03579 Actinidia chinensis HOM05D006422 ORTHO05D007992 2.1e-45 186.4 145 64.8
MBI13_g31531_MAGBIO Magnolia biondii HOM05D006422 ORTHO05D007992 4.6e-45 185.3 113 75.2
Rhsim07G0170200 Rhododendron simsii HOM05D006422 ORTHO05D007992 4.6e-45 185.3 135 68.1
CSS0034711 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 1.0e-44 184.1 130 70.0
Nitab4.5_0000025g0080 Nicotiana tabacum HOM05D006422 ORTHO05D007992 1.0e-44 184.1 160 63.1
MSTRG.11814 Avicennia marina HOM05D006422 ORTHO05D007992 3.9e-44 182.2 159 59.1
Gohir.D06G108900 Gossypium hirsutum HOM05D006422 ORTHO05D007992 5.1e-44 181.8 155 60.6
Peaxi162Scf00045g01530 Petunia axillaris HOM05D006422 ORTHO05D007992 6.6e-44 181.4 137 70.1
CSS0017479 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 1.1e-43 180.6 119 73.1
Gorai.010G123700 Gossypium raimondii HOM05D006422 ORTHO05D007992 1.1e-43 180.6 155 60.0
HanXRQChr13g0412481 Helianthus annuus HOM05D006422 ORTHO05D007992 3.3e-43 179.1 132 66.7
SGA_v2.0_scaffold27G11666 Striga asiatica HOM05D006422 ORTHO05D007992 3.3e-43 179.1 157 61.1
AUR62038756 Chenopodium quinoa HOM05D006422 ORTHO05D007992 1.3e-42 177.2 103 78.6
Lsat_1_v5_gn_5_61061 Lactuca sativa HOM05D006422 ORTHO05D007992 1.6e-42 176.8 144 63.2
ECA240G0283 Erigeron canadensis HOM05D000069 ORTHO05D000060 2.1e-42 176.4 125 68.0
Gohir.A06G106700 Gossypium hirsutum HOM05D006422 ORTHO05D007992 2.1e-42 176.4 159 59.1
Haze_21696 Corylus avellana HOM05D006422 ORTHO05D007992 8.1e-42 174.5 98 82.7
unitig_748.g7381 Utricularia gibba HOM05D006422 ORTHO05D007992 1.2e-40 170.6 148 60.1
vmacro05107 Vaccinium macrocarpon HOM05D006422 ORTHO05D007992 1.2e-40 170.6 105 72.4
DCAR_003025 Daucus carota HOM05D006422 ORTHO05D007992 3.4e-40 169.1 114 71.1
Nitab4.5_0003259g0070 Nicotiana tabacum HOM05D006422 ORTHO05D007992 5.8e-40 168.3 150 62.7
ATR0626G032 Amborella trichopoda HOM05D006422 ORTHO05D007992 1.3e-39 167.2 127 62.2
Zm00001eb071430 Zea mays HOM05D006422 ORTHO05D007992 8.4e-39 164.5 152 57.2
Os04g0607000 Oryza sativa ssp. japonica HOM05D006422 ORTHO05D007992 4.2e-38 162.2 151 56.3
Oeu018400.2 Olea europaea HOM05D006422 ORTHO05D007992 5.1e-36 155.2 100 69.0
SEGI_33970 Sequoiadendron giganteum HOM05D006422 ORTHO05D007992 2.0e-32 143.3 113 57.5
Ah.11g043920 Amaranthus hybridus HOM05D006422 ORTHO05D007992 1.1e-30 137.5 129 58.1
CSS0035518 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 5.1e-28 128.6 107 57.9
Mapoly0021s0119 Marchantia polymorpha HOM05D006422 ORTHO05D007992 2.4e-25 119.8 155 42.6
AagrBONN_evm.TU.Sc2ySwM_228.4709 Anthoceros agrestis HOM05D006422 ORTHO05D007992 3.1e-25 119.4 111 48.6
Pp3c13_4790 Physcomitrium patens HOM05D006422 ORTHO05D007992 1.5e-24 117.1 111 46.8
SMO364G0843 Selaginella moellendorffii HOM05D006422 ORTHO05D007992 1.5e-24 117.1 104 56.7
Lj7A749G60 Lonicera japonica HOM05D006422 ORTHO05D007992 4.9e-23 112.1 61 82.0
Hund19396 Selenicereus undatus HOM05D006422 ORTHO05D007992 4.5e-16 89.0 119 45.4
CBR_g3792 Chara braunii HOM05D006422 ORTHO05D007992 5.9e-16 88.6 115 40.0
Cre07.g325736 Chlamydomonas reinhardtii HOM05D006422 ORTHO05D007992 1.4e-14 84.0 120 34.2
Gorai.002G101300 Gossypium raimondii HOM05D006422 ORTHO05D007992 1.0e-12 77.8 51 68.6
MCO15G093 Micromonas commoda HOM05D006422 ORTHO05D007992 2.9e-07 59.7 173 25.4


User provided reference genes

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